TCONS_00047431 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047431
Unique NameTCONS_00047431
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047431 ID=TCONS_00047431|Name=TCONS_00047431|organism=Clytia hemisphaerica|type=transcript|length=2307bp
AGAACATCAAGAAATGAGAGCCTTCTACCCCCGAGGGATTGTGTTTGGGG
AGTTTGTTACAAGCAGCCTACGCTTGTCCTTTACgtatttgaaaatcttt
cagAGAGGATGATATGAAAAATCCCAAATATTTGTAATTGAGATACATCC
TACACGCATGTGctgcaattttttttataatccCAGAATTAAATATTTAT
CCATTTCTTTttagaaacataaaaaatgacataagggTAATCTTTAAGAA
ATAATTGAACCATAAATCCATAACAATGGCGTCAGCAGATGTTGGCGATA
ACGTTTCATCCAAACTGTTCTTTTGCCATGTTTGCTCACAAGAAGTCGGT
GCAACTGAGGACTTGACATGTGCAATCTGCAGTTCTGGTGCAATTGAAGA
ACTTGAAACTATCAACACATCCCAAGAacccacTCAAAACCAAGAACATG
ATGAACAGGACGATTTTGTAAGTTTTTGGGACAACATGAGCAGAGGACGC
AGGAGAAGAGCACACAGTTATGGTTTACGACAAAGCACCAATCAAATTCC
CAGGCGACGTCCACAAGTCATGGTGCATATTGGTTCACCAAATAATTCAT
TCCAAATGCACAGCACAAGCAGTGGTGGACCTGATCTTGATATGTTTGTT
CAACAGCTCTTTGGTAACCTAGGTGTGCAATTCTCACGGAATGGCTTTTC
TGCAATGCCTATGGGAGGCAATGGAATGGGTTTTGCTGGGAATTTAGGAG
ATTATGCTTGGGGACCAAGCGGATTGGATAATATCATTACACAATTGCTA
AATCAGTTGGATAATTCTGGTCCTCCGCCTGCTGAACGAACTAAAATTGA
CTCACTACCTATTTATGAAATCACTCAAAAGGACCTAGACGAAAAATCAG
AATGTGCAGTATGTCAAGATCAATTTCAATTGAGTGAAAAGGTCAAACAA
CTTCCATGTAAACACAACTTTCATACGCCATGCATTGAACCTTGGCTAGA
AATGCACGACTCTTGTCCAATATGTCGAATGAATTTGAATGGTGAACGAT
CACGTGATGACAGATAACCCAATCATGATTCGAGTTGACTGAGGGGATAG
CCAATCAAATATTGAGTTGATCGGATACACAACCAATCATATTTCGAGTT
GTTGTGATTGAAAGGAGAAGGATGCGTTTGTAAAGGGTACCTGTTGAGGT
GTCAGACGGAGATAAGTGTGGTATTATCATGGTGACTTTCTTGCCACCAG
CTAACGTGTATCAATTAAGAACATAACTTAATCAAATAAAatacttgaaa
tggaaattgTCGATCTTCAGATAGAATGGTATCGAACAACTGAATTTTTT
TCGTGAACAAAAACATACGACAAAATATCGGAACATTCGTTCTCTGAAAG
AATCAATACCTTTGAAGGTTAAAACTCCGATAAAGACGGTTGCTTTACGC
AAGTTACAAACGTTAACCTAAAAGTCAAATATTTTAGATAGTGAGACTTT
CTTAATACCATCATAACATCCTGGAGTGTATCAACTCCTTGTTCTGCCTT
ATTAGTAAAAAGTCAAAAGGTTAGTCTAtattaaaatgaatttttacaGG
GATTTTGCTCTCTGGCCAAATCTtaattttcaaacattcttCACTTTTTG
TTGTTTAGTTTATCTACCCCTCCTTGCCTTTTTTGGCAATCAGTATTAGC
TATTTATGTATCTTGACATCGAGTTTTCCCTTTTAAGccgttttgttttt
gtgtttaaaAAGAGCATGCACTTTGTATTGTTAGTTTTATGTTAAAATTG
TAACTCGGACAAAAATGATCACGGTATTTTAAGacattcttctttttctt
cttcatgtcccaccaagatttttttgaagatgCTAGCcttttagaacaac
aaatttctttcatccCAAGGAGTACAAATTGCCAGTCAGTGCCGGTGACT
CATATTATCTATTAAGCTTGGCGAACACTATTGCAAGGGACTATTTCGGC
TGTATTTGTATCAACGATTACGACAAATTGTTCTGTTTTTTTAAGTTTGG
agcttttgtttttttagtgCTAGGTCAATAATACAGAATcgtaaaaaatt
ggaaaaacgtTGTTCATTATTTTAGAAGATTTATTTTGTCcataaaatat
cataaattttttgaatgtaaattttatagcaataattttattacaagttt
aTTAATGTAAAAATTAAACCCCCTTTTTTGTTCGTTAAAAATTCCcttta
aaaaatttaacatctatattaattttttaaatgaaatagaCCATTTCCCA
TACTGCA
Run BLAST on NCBI

protein sequence of TCONS_00047431-protein

>TCONS_00047431-protein ID=TCONS_00047431-protein|Name=TCONS_00047431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MASADVGDNVSSKLFFCHVCSQEVGATEDLTCAICSSGAIEELETINTSQ
EPTQNQEHDEQDDFVSFWDNMSRGRRRRAHSYGLRQSTNQIPRRRPQVMV
HIGSPNNSFQMHSTSSGGPDLDMFVQQLFGNLGVQFSRNGFSAMPMGGNG
MGFAGNLGDYAWGPSGLDNIITQLLNQLDNSGPPPAERTKIDSLPIYEIT
QKDLDEKSECAVCQDQFQLSEKVKQLPCKHNFHTPCIEPWLEMHDSCPIC
RMNLNGERSRDDR
Run BLAST on NCBI

transcript from alignment at scaffold_128:68844..73911+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047431 ID=TCONS_00047431|Name=TCONS_00047431|organism=Clytia hemisphaerica|type=transcript|length=5068bp|location=Sequence derived from alignment at scaffold_128:68844..73911+ (Clytia hemisphaerica)
AGAACATCAAGAAATGAGAGCCTTCTACCCCCGAGGGATTGTGTTTGGGG
AGTTTGTTACAAGCAGCCTACGCTTGTCCTTTACgtatttgaaaatcttt
cagAGAGGATGATATGAAAAATCCCAAATATTTGTAATTGAGATACATCC
TACACGCATGTGctgcaattttttttataatccCAGAATTAAATATTTAT
CCATTTCTTTttagaaacataaaaaatgacataagggTAATCTTTAAGAA
ATAATTGAACCATAAATCCATAACAATGGCGTCAGCAGATGTTGGCGATA
ACGTTTCATCCAAACTGTTCTTTTGCCATGTTTGCTCACAAGAAGTCGGT
GCAACTGAGGTaaatacaaaattttcatttccaaTAATTTTTAACCATCA
CAGTAAAAAGTGGGCAGAATATCAGGTTAAGAAAAGCTATCATGCTCAAA
AGGGGTCAAACACtcaaaatacatttttcacACCCTGGTAATCTGAATTT
TCCTGTTACAATGTACTAATTACTATGTGATTGTACTTTGCAGTaccatg
atttaaaaaaaaatttacatcagAAAACCATTATCAAGTGCTTTTGGATT
TCAAAAAGTagaattaattatttttattcCTTGATTGCATAACTCCCAGA
AAGTTAGCTATGTTTTCCAGGCCGTCTTATTTTTGTAAAACTGTTGATAT
CTTTAGGACTTGACATGTGCAATCTGCAGTTCTGGTGCAATTGAAGAACT
TGAAACTATCAACACATCCCAAGAGTAataattatcatgtttttagtttt
tatatCATCATCACcagtcattttattttttttagtcaCAATGAATaggc
caaaaaaaattcaattcatgGGTATTTGTAACTGAAGCATTATTTATGAT
AGAATTCTTTAATGGTGATGATGAGAGGTCTCTGATTGACACAGTTTCAG
AGTTGAAAGcctgcaattataatttttctaTATCTCTCTATGATGTACTG
cttatttttgataattattgTCTAATTTAGATATTTCACctgtatttttt
tcagacccacTCAAAACCAAGAACATGATGAACAGGACGATTTTGTAAGT
GTAAGTGTTGAATGAAACAAAGTCAAAACGTTTTAAATTGGTGACCTAAT
TGATGATAGCATTACAATTTTATTTATGCAAATTCTTTCTGTCCAttact
tttttgtttataatataGACTATAATAATGATTGTATTTTTTAAACTACT
ATAGGATGGCTATTCTCATTCTTAGGGAAACTCTCCTGGTGCTTTTACGG
GATCTGTCTGTTATTCTATTCCAGGCATACCAGCTGGGGGAGTTTTCGTT
GTAAAGTGGCAATAGGAAATTTTTTCCGGTaatgaaaaagtttacaaaac
cTCCTGTTAATTGAAGGATGATCGTGTCATGAACAATTACCctaattata
tattatattgaaAACAGAAACAGTTATATCTATAATGCTTTTGATCTTTT
GTGTTCTCTTTAGTTTTGGGACAACATGAGCAGAGGACGCAGGAGAAGAG
GTActtcaattcaaaaattgcaaatttcaaATGTATTTTGTATTTACTCT
GTATTTACCTATCATAAAttcttttattaatttctttcaatttttctatt
tccaacctaaaattttatattCTTCTATTTACAGCACACAGTTATGGTTT
ACGACAAAGCACCAATCAAATTCCCAGGCGACGTCCACAAGTCATGGTGC
ATATTGGTTCACCAAATAATTCATTCCAAATGCACAGCACAAGCAGTGGT
GGACCTGATCTTGATATGTTTGTTCAACAGCTCTTTGGTAACCTAGGTGT
GCAATTCTCACGGAATGGCTTTTCTGCAATGCCTATGGGAGGCAATGGAA
TGGGTTTTGCTGGGAATTTAGGAGATTATGCTTGGGGACCAAGCGGATTG
GATAATATCATTACACAATTGCTAAATCAGTTGGATAATTCTGGTCCTCC
GCCTGCTGAACGAACTAAAATTGACTCACTACCTATTTATGAAATCACTC
AAAAGGACCTAGGTATGTTGTATTTGTGTAGATTCTGCATAATACCATCT
CTTTTTGCAATTAAGAGGCTGCTTGCATATTAACTGCCATGAAATAACAA
AACTTAAAGAACAACACCTTTATCCGTGACCCGATGATGTTATTTAAGTC
AGCGAGAATGAAATTAAGCTAAACAGGGAAGAGAAATTGCCTGTTTGAAT
GGGTGGGGATTTCTAGTTTTATTGATTACAGGGGATTCTTTGAAATTATT
ATCATTGGCTTTCCTAATGGTAATGGGAATGAGAGGTcattgtgtatatt
ttttttcagtggagGAAATGTCCGTTTCAGTGCGCCTCTATACTGTCAAA
GCAGAACGAACaagaaaatttcttaaaatttgtgCTCACTGGGATCTGAA
AATGGAGTAAATAATTAAATGTAGCCCTTAATGTAGCCCTTTAAATATTG
ATTTCATTTCTCGTAGACGAAAAATCAGAATGTGCAGTATGTCAAGATCA
ATTTCAATTGAGTGAAAAGGTCAAACAACTTCCATGTAAACACAACTTTC
ATACGCCATGCATTGAACCTTGGCTAGAAATGgtaagatttttcttttta
tctattctctcaatattttattttttaaagaaaagcaGTTCTGATAATGT
ATTTGTTTGTCATCGAAGGATGTTGTCTGGGACAAGCATTACTACAAGAG
ATATACATGGATTTCGAATTAGCTCTGTAAGAAAAGTCTCCTTCAGATCG
AGATACAGTAATAAAATCTTcctaaaaactcaaaatcatCAATTTAACCA
TTTTTGCAATCATTCATTATAGACATAAATGAACAAACACAATATGCAAA
GGTGCACAGTTTTTGGCCAATCAGAGAGTTCACTATAATTTTTCCGAGAA
TTAattctaaagtctgttcacgatataagtgtgcactcttttttctttta
cccaTAAACTTtcgaaggaattcttcaatctttataaaatttggtatcgt
tggagagatactTGTGAGCGGaacaatttgaaagaaaaatgtctttagaa
aaattctaaaaacgaagacaaaaatgaagaagaaaaaaatgaagattttg
tagagaagtgctataactttcatttttactggaGAGATTTTTGATCTTAG
GAAATCATCACTgtaaagaaatttcactaaaatatttattcaagataaag
ttatgatacaaagttaataagtgattgaccccaaaaaaacagcagaaaac
agcagaaaacagcgttttttgacgtcaatcagcttataactttgtttgat
atcttttgactgaatgattatttttgagaaatcttttcacagtgatgacg
ttcgacgATCAAGGAtttacttcagtgaaaatgatagttatagcagtTTT
Ctacaagattttcatttttttcttcttcattttcatcttcatttttagaa
tttttttatagatttctttattccaaattgttccactcactaatatcttt
ccaatgacaccaaatttataaagattgaagaatttcttctaaagttatag
gtaaaagaaaaaagagtgcacacttatcgtgaatagactttaattccTTG
TATTTTTTTGGAGTTTATGAGACTATAACTTAATATAAAGATTCTTCTAC
TTATTTTACAGCACGACTCTTGTCCAATATGTCGAATGAATNTGATTCTT
TTACTTATTTTACAGCACGACTCTTGTCCAATATGTCGAATGAATTTGAA
TGGTGAACGATCACGTGATGACAGATAACCCAATCATGATTCGAGTTGAC
TGAGGGGATAGCCAATCAAATATTGAGTTGATCGGATACACAACCAATCA
TATTTCGAGTTGTTGTGATTGAAAGGAGAAGGATGCGTTTGTAAAGGGTA
CCTGTTGAGGTGTCAGACGGAGATAAGTGTGGTATTATCATGGTGACTTT
CTTGCCACCAGCTAACGTGTATCAATTAAGAACATAACTTAATCAAATAA
AatacttgaaatggaaattgTCGATCTTCAGATAGAATGGTATCGAACAA
CTGAATTTTTTTCGTGAACAAAAACATACGACAAAATATCGGAACATTCG
TTCTCTGAAAGAATCAATACCTTTGAAGGTTAAAACTCCGATAAAGACGG
TTGCTTTACGCAAGTTACAAACGTTAACCTAAAAGTCAAATATTTTAGAT
AGTGAGACTTTCTTAATACCATCATAACATCCTGGAGTGTATCAACTCCT
TGTTCTGCCTTATTAGTAAAAAGTCAAAAGGTTAGTCTAtattaaaatga
atttttacaGGGATTTTGCTCTCTGGCCAAATCTtaattttcaaacattc
ttCACTTTTTGTTGTTTAGTTTATCTACCCCTCCTTGCCTTTTTTGGCAA
TCAGTATTAGCTATTTATGTATCTTGACATCGAGTTTTCCCTTTTAAGcc
gttttgtttttgtgtttaaaAAGAGCATGCACTTTGTATTGTTAGTTTTA
TGTTAAAATTGTAACTCGGACAAAAATGATCACGGTATTTTAAGacattc
ttctttttcttcttcatgtcccaccaagatttttttgaagatgCTAGCct
tttagaacaacaaatttctttcatccCAAGGAGTACAAATTGCCAGTCAG
TGCCGGTGACTCATATTATCTATTAAGCTTGGCGAACACTATTGCAAGGG
ACTATTTCGGCTGTATTTGTATCAACGATTACGACAAATTGTTCTGTTTT
TTTAAGTTTGGagcttttgtttttttagtgCTAGGTCAATAATACAGAAT
cgtaaaaaattggaaaaacgtTGTTCATTATTTTAGAAGATTTATTTTGT
Ccataaaatatcataaattttttgaatgtaaattttatagcaataatttt
attacaagtttaTTAATGTAAAAATTAAACCCCCTTTTTTGTTCGTTAAA
AATTCCctttaaaaaatttaacatctatattaattttttaaatgaaatag
aCCATTTCCCATACTGCA

Coding sequence (CDS) from alignment at scaffold_128:68844..73911+

>TCONS_00047431 ID=TCONS_00047431|Name=TCONS_00047431|organism=Clytia hemisphaerica|type=CDS|length=6336bp|location=Sequence derived from alignment at scaffold_128:68844..73911+ (Clytia hemisphaerica)
ATGGCGTCAGCAGATGTTGGCGATAACGTTTCATCCAAACTGTTCTTTTG
CCATGTTTGCTCACAAGAAGTCGGTGCAACTGAGGACTTGACATGTGCAA
TCTGCAGTTCTGGTGCAATTGAAGAACTTGAAACTATCAACACATCCCAA
GAacccacTCAAAACCAAGAACATGATGAACAGGACGATTTTGTAAGTTT
TTGGGACAACATGAGCAGAGGACGCAGGAGAAGAGCACACAGTTATGGTT
TACGACAAAGCACCAATCAAATTCCCAGGCGACGTCCACAAGTCATGGTG
CATATTGGTTCACCAAATAATTCATTCCAAATGCACAGCACAAGCAGTGG
TGGACCTGATCTTGATATGTTTGTTCAACAGCTCTTTGGTAACCTAGGTG
TGCAATTCTCACGGAATGGCTTTTCTGCAATGCCTATGGGAGGCAATGGA
ATGGGTTTTGCTGGGAATTTAGGAGATTATGCTTGGGGACCAAGCGGATT
GGATAATATCATTACACAATTGCTAAATCAGTTGGATAATTCTGGTCCTC
CGCCTGCTGAACGAACTAAAATTGACTCACTACCTATTTATGAAATCACT
CAAAAGGACCTAGACGAAAAATCAGAATGTGCAGTATGTCAAGATCAATT
TCAATTGAGTGAAAAGGTCAAACAACTTCCATGTAAACACAACTTTCATA
CGCCATGCATTGAACCTTGGCTAGAAATGCACGACTCTTGTCCAATATGT
CGAATGAATTTGAATGGTGAACGATCACGTGATGACAGATAAATGGCGTC
AGCAGATGTTGGCGATAACGTTTCATCCAAACTGTTCTTTTGCCATGTTT
GCTCACAAGAAGTCGGTGCAACTGAGGACTTGACATGTGCAATCTGCAGT
TCTGGTGCAATTGAAGAACTTGAAACTATCAACACATCCCAAGAacccac
TCAAAACCAAGAACATGATGAACAGGACGATTTTGTAAGTTTTTGGGACA
ACATGAGCAGAGGACGCAGGAGAAGAGCACACAGTTATGGTTTACGACAA
AGCACCAATCAAATTCCCAGGCGACGTCCACAAGTCATGGTGCATATTGG
TTCACCAAATAATTCATTCCAAATGCACAGCACAAGCAGTGGTGGACCTG
ATCTTGATATGTTTGTTCAACAGCTCTTTGGTAACCTAGGTGTGCAATTC
TCACGGAATGGCTTTTCTGCAATGCCTATGGGAGGCAATGGAATGGGTTT
TGCTGGGAATTTAGGAGATTATGCTTGGGGACCAAGCGGATTGGATAATA
TCATTACACAATTGCTAAATCAGTTGGATAATTCTGGTCCTCCGCCTGCT
GAACGAACTAAAATTGACTCACTACCTATTTATGAAATCACTCAAAAGGA
CCTAGACGAAAAATCAGAATGTGCAGTATGTCAAGATCAATTTCAATTGA
GTGAAAAGGTCAAACAACTTCCATGTAAACACAACTTTCATACGCCATGC
ATTGAACCTTGGCTAGAAATGCACGACTCTTGTCCAATATGTCGAATGAA
TTTGAATGGTGAACGATCACGTGATGACAGATAAATGGCGTCAGCAGATG
TTGGCGATAACGTTTCATCCAAACTGTTCTTTTGCCATGTTTGCTCACAA
GAAGTCGGTGCAACTGAGGACTTGACATGTGCAATCTGCAGTTCTGGTGC
AATTGAAGAACTTGAAACTATCAACACATCCCAAGAacccacTCAAAACC
AAGAACATGATGAACAGGACGATTTTGTAAGTTTTTGGGACAACATGAGC
AGAGGACGCAGGAGAAGAGCACACAGTTATGGTTTACGACAAAGCACCAA
TCAAATTCCCAGGCGACGTCCACAAGTCATGGTGCATATTGGTTCACCAA
ATAATTCATTCCAAATGCACAGCACAAGCAGTGGTGGACCTGATCTTGAT
ATGTTTGTTCAACAGCTCTTTGGTAACCTAGGTGTGCAATTCTCACGGAA
TGGCTTTTCTGCAATGCCTATGGGAGGCAATGGAATGGGTTTTGCTGGGA
ATTTAGGAGATTATGCTTGGGGACCAAGCGGATTGGATAATATCATTACA
CAATTGCTAAATCAGTTGGATAATTCTGGTCCTCCGCCTGCTGAACGAAC
TAAAATTGACTCACTACCTATTTATGAAATCACTCAAAAGGACCTAGACG
AAAAATCAGAATGTGCAGTATGTCAAGATCAATTTCAATTGAGTGAAAAG
GTCAAACAACTTCCATGTAAACACAACTTTCATACGCCATGCATTGAACC
TTGGCTAGAAATGCACGACTCTTGTCCAATATGTCGAATGAATTTGAATG
GTGAACGATCACGTGATGACAGATAAATGGCGTCAGCAGATGTTGGCGAT
AACGTTTCATCCAAACTGTTCTTTTGCCATGTTTGCTCACAAGAAGTCGG
TGCAACTGAGGACTTGACATGTGCAATCTGCAGTTCTGGTGCAATTGAAG
AACTTGAAACTATCAACACATCCCAAGAacccacTCAAAACCAAGAACAT
GATGAACAGGACGATTTTGTAAGTTTTTGGGACAACATGAGCAGAGGACG
CAGGAGAAGAGCACACAGTTATGGTTTACGACAAAGCACCAATCAAATTC
CCAGGCGACGTCCACAAGTCATGGTGCATATTGGTTCACCAAATAATTCA
TTCCAAATGCACAGCACAAGCAGTGGTGGACCTGATCTTGATATGTTTGT
TCAACAGCTCTTTGGTAACCTAGGTGTGCAATTCTCACGGAATGGCTTTT
CTGCAATGCCTATGGGAGGCAATGGAATGGGTTTTGCTGGGAATTTAGGA
GATTATGCTTGGGGACCAAGCGGATTGGATAATATCATTACACAATTGCT
AAATCAGTTGGATAATTCTGGTCCTCCGCCTGCTGAACGAACTAAAATTG
ACTCACTACCTATTTATGAAATCACTCAAAAGGACCTAGACGAAAAATCA
GAATGTGCAGTATGTCAAGATCAATTTCAATTGAGTGAAAAGGTCAAACA
ACTTCCATGTAAACACAACTTTCATACGCCATGCATTGAACCTTGGCTAG
AAATGCACGACTCTTGTCCAATATGTCGAATGAATTTGAATGGTGAACGA
TCACGTGATGACAGATAAATGGCGTCAGCAGATGTTGGCGATAACGTTTC
ATCCAAACTGTTCTTTTGCCATGTTTGCTCACAAGAAGTCGGTGCAACTG
AGGACTTGACATGTGCAATCTGCAGTTCTGGTGCAATTGAAGAACTTGAA
ACTATCAACACATCCCAAGAacccacTCAAAACCAAGAACATGATGAACA
GGACGATTTTGTAAGTTTTTGGGACAACATGAGCAGAGGACGCAGGAGAA
GAGCACACAGTTATGGTTTACGACAAAGCACCAATCAAATTCCCAGGCGA
CGTCCACAAGTCATGGTGCATATTGGTTCACCAAATAATTCATTCCAAAT
GCACAGCACAAGCAGTGGTGGACCTGATCTTGATATGTTTGTTCAACAGC
TCTTTGGTAACCTAGGTGTGCAATTCTCACGGAATGGCTTTTCTGCAATG
CCTATGGGAGGCAATGGAATGGGTTTTGCTGGGAATTTAGGAGATTATGC
TTGGGGACCAAGCGGATTGGATAATATCATTACACAATTGCTAAATCAGT
TGGATAATTCTGGTCCTCCGCCTGCTGAACGAACTAAAATTGACTCACTA
CCTATTTATGAAATCACTCAAAAGGACCTAGACGAAAAATCAGAATGTGC
AGTATGTCAAGATCAATTTCAATTGAGTGAAAAGGTCAAACAACTTCCAT
GTAAACACAACTTTCATACGCCATGCATTGAACCTTGGCTAGAAATGCAC
GACTCTTGTCCAATATGTCGAATGAATTTGAATGGTGAACGATCACGTGA
TGACAGATAAATGGCGTCAGCAGATGTTGGCGATAACGTTTCATCCAAAC
TGTTCTTTTGCCATGTTTGCTCACAAGAAGTCGGTGCAACTGAGGACTTG
ACATGTGCAATCTGCAGTTCTGGTGCAATTGAAGAACTTGAAACTATCAA
CACATCCCAAGAacccacTCAAAACCAAGAACATGATGAACAGGACGATT
TTGTAAGTTTTTGGGACAACATGAGCAGAGGACGCAGGAGAAGAGCACAC
AGTTATGGTTTACGACAAAGCACCAATCAAATTCCCAGGCGACGTCCACA
AGTCATGGTGCATATTGGTTCACCAAATAATTCATTCCAAATGCACAGCA
CAAGCAGTGGTGGACCTGATCTTGATATGTTTGTTCAACAGCTCTTTGGT
AACCTAGGTGTGCAATTCTCACGGAATGGCTTTTCTGCAATGCCTATGGG
AGGCAATGGAATGGGTTTTGCTGGGAATTTAGGAGATTATGCTTGGGGAC
CAAGCGGATTGGATAATATCATTACACAATTGCTAAATCAGTTGGATAAT
TCTGGTCCTCCGCCTGCTGAACGAACTAAAATTGACTCACTACCTATTTA
TGAAATCACTCAAAAGGACCTAGACGAAAAATCAGAATGTGCAGTATGTC
AAGATCAATTTCAATTGAGTGAAAAGGTCAAACAACTTCCATGTAAACAC
AACTTTCATACGCCATGCATTGAACCTTGGCTAGAAATGCACGACTCTTG
TCCAATATGTCGAATGAATTTGAATGGTGAACGATCACGTGATGACAGAT
AAATGGCGTCAGCAGATGTTGGCGATAACGTTTCATCCAAACTGTTCTTT
TGCCATGTTTGCTCACAAGAAGTCGGTGCAACTGAGGACTTGACATGTGC
AATCTGCAGTTCTGGTGCAATTGAAGAACTTGAAACTATCAACACATCCC
AAGAacccacTCAAAACCAAGAACATGATGAACAGGACGATTTTGTAAGT
TTTTGGGACAACATGAGCAGAGGACGCAGGAGAAGAGCACACAGTTATGG
TTTACGACAAAGCACCAATCAAATTCCCAGGCGACGTCCACAAGTCATGG
TGCATATTGGTTCACCAAATAATTCATTCCAAATGCACAGCACAAGCAGT
GGTGGACCTGATCTTGATATGTTTGTTCAACAGCTCTTTGGTAACCTAGG
TGTGCAATTCTCACGGAATGGCTTTTCTGCAATGCCTATGGGAGGCAATG
GAATGGGTTTTGCTGGGAATTTAGGAGATTATGCTTGGGGACCAAGCGGA
TTGGATAATATCATTACACAATTGCTAAATCAGTTGGATAATTCTGGTCC
TCCGCCTGCTGAACGAACTAAAATTGACTCACTACCTATTTATGAAATCA
CTCAAAAGGACCTAGACGAAAAATCAGAATGTGCAGTATGTCAAGATCAA
TTTCAATTGAGTGAAAAGGTCAAACAACTTCCATGTAAACACAACTTTCA
TACGCCATGCATTGAACCTTGGCTAGAAATGCACGACTCTTGTCCAATAT
GTCGAATGAATTTGAATGGTGAACGATCACGTGATGACAGATAAATGGCG
TCAGCAGATGTTGGCGATAACGTTTCATCCAAACTGTTCTTTTGCCATGT
TTGCTCACAAGAAGTCGGTGCAACTGAGGACTTGACATGTGCAATCTGCA
GTTCTGGTGCAATTGAAGAACTTGAAACTATCAACACATCCCAAGAaccc
acTCAAAACCAAGAACATGATGAACAGGACGATTTTGTAAGTTTTTGGGA
CAACATGAGCAGAGGACGCAGGAGAAGAGCACACAGTTATGGTTTACGAC
AAAGCACCAATCAAATTCCCAGGCGACGTCCACAAGTCATGGTGCATATT
GGTTCACCAAATAATTCATTCCAAATGCACAGCACAAGCAGTGGTGGACC
TGATCTTGATATGTTTGTTCAACAGCTCTTTGGTAACCTAGGTGTGCAAT
TCTCACGGAATGGCTTTTCTGCAATGCCTATGGGAGGCAATGGAATGGGT
TTTGCTGGGAATTTAGGAGATTATGCTTGGGGACCAAGCGGATTGGATAA
TATCATTACACAATTGCTAAATCAGTTGGATAATTCTGGTCCTCCGCCTG
CTGAACGAACTAAAATTGACTCACTACCTATTTATGAAATCACTCAAAAG
GACCTAGACGAAAAATCAGAATGTGCAGTATGTCAAGATCAATTTCAATT
GAGTGAAAAGGTCAAACAACTTCCATGTAAACACAACTTTCATACGCCAT
GCATTGAACCTTGGCTAGAAATGCACGACTCTTGTCCAATATGTCGAATG
AATTTGAATGGTGAACGATCACGTGATGACAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030210XLOC_030210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047431-exon-scaffold_128-1491911889:68844..69202TCONS_00047431-exon-scaffold_128-1491911889:68844..69202Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1510915933:68844..69202TCONS_00047431-exon-scaffold_128-1510915933:68844..69202Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1575043694:68844..69202TCONS_00047431-exon-scaffold_128-1575043694:68844..69202Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1491911889:69550..69617TCONS_00047431-exon-scaffold_128-1491911889:69550..69617Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1510915933:69550..69617TCONS_00047431-exon-scaffold_128-1510915933:69550..69617Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1575043694:69550..69617TCONS_00047431-exon-scaffold_128-1575043694:69550..69617Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1491911889:69898..69943TCONS_00047431-exon-scaffold_128-1491911889:69898..69943Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1510915933:69898..69943TCONS_00047431-exon-scaffold_128-1510915933:69898..69943Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1575043694:69898..69943TCONS_00047431-exon-scaffold_128-1575043694:69898..69943Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1491911889:70357..70393TCONS_00047431-exon-scaffold_128-1491911889:70357..70393Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1510915933:70357..70393TCONS_00047431-exon-scaffold_128-1510915933:70357..70393Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1575043694:70357..70393TCONS_00047431-exon-scaffold_128-1575043694:70357..70393Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1491911889:70528..70905TCONS_00047431-exon-scaffold_128-1491911889:70528..70905Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1510915933:70528..70905TCONS_00047431-exon-scaffold_128-1510915933:70528..70905Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1575043694:70528..70905TCONS_00047431-exon-scaffold_128-1575043694:70528..70905Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1491911889:71360..71475TCONS_00047431-exon-scaffold_128-1491911889:71360..71475Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1510915933:71360..71475TCONS_00047431-exon-scaffold_128-1510915933:71360..71475Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1575043694:71360..71475TCONS_00047431-exon-scaffold_128-1575043694:71360..71475Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1491911889:72555..72573TCONS_00047431-exon-scaffold_128-1491911889:72555..72573Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1510915933:72555..72573TCONS_00047431-exon-scaffold_128-1510915933:72555..72573Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1575043694:72555..72573TCONS_00047431-exon-scaffold_128-1575043694:72555..72573Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1491911889:72628..73911TCONS_00047431-exon-scaffold_128-1491911889:72628..73911Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1510915933:72628..73911TCONS_00047431-exon-scaffold_128-1510915933:72628..73911Clytia hemisphaericaexon
TCONS_00047431-exon-scaffold_128-1575043694:72628..73911TCONS_00047431-exon-scaffold_128-1575043694:72628..73911Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047431-proteinTCONS_00047431-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:68844..73911 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.82981	4.48571	3.63202	2.34039	7.51826	4.24548	7.37517	8.90099	2.42019	3.52681	3.59437	3.60045	5.70333	3.0338	3.69683	3.70614	5.07295	4.54966	4.48972	5.82573	4.43368	5.55741	5.58157	5.05133	7.15211	8.945	9.49546	13.103	4.31278	5.34926
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Blast
[Close]
BLAST of TCONS_00047431 vs. Swiss-Prot (Human)
Match: RN115 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.956e-38
Identity = 95/267 (35.58%), Postives = 135/267 (50.56%), Query Frame = 3 
Query:  318 FFCHVCSQEVGAT-EDLTCAICSSGAIEELE----------------TINTSQEPTQNQEHDEQ-DDFVSFWDNMSRGRRRRAHSYGLRQSTNQIPRRRPQVMVHIGSPNNSFQMHSTSSGGPDLDMFVQQLFG----NLGVQFSRNGFSXXXXXXXXXXXXXXXXDYAWGPSGLDNIITQLLNQLDNSGPPPAERTKIDSLPIYEITQKDLDEKSECAVCQDQFQLSEKVKQLPCKHNFHTPCIEPWLEMHDSCPICRMNLNGERS 1052
            FFCH C  EV     +  C  C SG IEE+                 T     E   + +H     DF  F  +    +  RA+  G +  T+    R P++ +     +        S   P ++  +Q +F     N  +  S + FS   M  +  G      DYAWG +GLD I+TQLL QL+N+GPPPA++ KI SLP   +TQ+ +D   EC VC++ + + E+V+QLPC H FH+ CI PWLE+HD+CP+CR +LNGE S
Sbjct:   20 FFCHFCKGEVSPKLPEYICPRCESGFIEEVTDDSSFLGGGGSRIDNTTTTHFAELWGHLDHTMFFQDFRPFLSSSPLDQDNRANERGHQTHTDFWGARPPRLPLGRRYRSRGSSRPDRS---PAIEGILQHIFAGFFANSAIPGSPHPFSWSGMLHSNPG------DYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDS 277
The following BLAST results are available for this feature:
BLAST of TCONS_00047431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1152.956e-3835.58E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens... [more]
back to top