TCONS_00047418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047418
Unique NameTCONS_00047418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047418 ID=TCONS_00047418|Name=TCONS_00047418|organism=Clytia hemisphaerica|type=transcript|length=294bp
CCCTGACATTGCCCAAAACTTCCAAATTTTAGGTAGAATTTGGCTCTTAC
CTCAAGAATGTCTTAAAACAGGATAAAAAcaccattttaatttaaaaaca
gaaaaaagcgAGCACTGGTCGAAAAACCTGTTTTCGTACTCGACAGATAC
TTAGATCCATGATCCATATTGTCCAATTAGCTTTAACAGTAAACttttca
gatgagatggagtttttatactcttgtctcccgaatagaccgaataagca
gggggtagggaaattttctaaattctaataagcggggaggatgg
Run BLAST on NCBI

transcript from alignment at scaffold_127:160401..160694

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047418 ID=TCONS_00047418|Name=TCONS_00047418|organism=Clytia hemisphaerica|type=transcript|length=294bp|location=Sequence derived from alignment at scaffold_127:160401..160694 (Clytia hemisphaerica)
ccatcctccccgcttattagaatttagaaaatttccctaccccctgctta
ttcggtctattcgggagacaagagtataaaaactccatctcatctgaaaa
GTTTACTGTTAAAGCTAATTGGACAATATGGATCATGGATCTAAGTATCT
GTCGAGTACGAAAACAGGTTTTTCGACCAGTGCTcgcttttttctgtttt
taaattaaaatggtgTTTTTATCCTGTTTTAAGACATTCTTGAGGTAAGA
GCCAAATTCTACCTAAAATTTGGAAGTTTTGGGCAATGTCAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030202XLOC_030202Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047418-exon-scaffold_127-1491911889:160401..160694TCONS_00047418-exon-scaffold_127-1491911889:160401..160694Clytia hemisphaericaexon
TCONS_00047418-exon-scaffold_127-1510915933:160401..160694TCONS_00047418-exon-scaffold_127-1510915933:160401..160694Clytia hemisphaericaexon
TCONS_00047418-exon-scaffold_127-1575043694:160401..160694TCONS_00047418-exon-scaffold_127-1575043694:160401..160694Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_127supercontigscaffold_127:160401..160694 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.535185	1.00207	1.40314	0	0.843481	0	1.38425	3.45014	0	0.253665	0.312495	0.320297	0	0	0.804953	0.588942	0	0	0	2.39327	0	0	1.38609	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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