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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047414 ID=TCONS_00047414|Name=TCONS_00047414|organism=Clytia hemisphaerica|type=transcript|length=1514bp
ATTggtaaaaagcagaaaaatgtTGAGCACAAGTTGATGTGCCGTGATGT
TAGGTTGATGGATCCTCAACAGTGAGTTGTTTGTTTGCACAAgatatttt
ttaagaatattgtaacaccctcttctcacagacccagtgggacccccgtc
ccactggaaaaaatggccaaaaaatcgtccctgttggaaaattgtactcc
aattTTCGTCCttactcaaataaacaaatcctcactgcaaaatgtcATGT
TagtttttcatccccactgagtttCCCAACTTTAAACGAATGGAATTCAA
TTCTCCAGGCATAAAAAAcattggaatatcaatccccatcaagtttcatA
CCGTTATTTTACTCCGGAGAAGCAGTCGAGGACAGAGCATTCTTATGAAT
TGCAACAAAAATATAGTGGATTATTTCAACCATATTCTTACTTTCTTAGA
CTGAAATGCAGTACAATTTTGAAATGAGTTTTTCTGTCACGGATTTTAAA
TCATGGTTTCTAGATGGCACCTTGCAATTTTCTTCAGGTCATTGCATATA
CAGATATGCTCTTTAAAAGGTAAATGTGTTTTCGTACAAAATGTACTTCT
GAGCAGGTATTTTGTatctttgtgaaaaaattctttttctaggaaaatca
cTCGTGTAATTGAGAAACGTGCTTCATCAAAAGAACAGCCAAAAACGtag
gataaacttttttttaatttttctatttggttgagttacAGAAGGTTCTC
AGGCCCATTTCTTGCTTTCAATGAATTGAATGAActaccttgaactgact
acccaatccccctcacatggcatgggttaacCTAGATTGGattcgtttat
aatgcgtgtaatacagtagtatagacgttatatgataatacgatttaGTT
TGTAATGCTGTGgtactaaaatttgttccctccattatttttgactttat
ttccactatgtctgaattagtcgtctagcttgctagactagggTTAATAC
GGACAAAGGTTTGTTCATTTGACAAGTGAACAACTgcaagtgggaatcga
acctcaatcgtctgtgcagcaaccaaggttaaTGACTACACCACAGGACC
TTTCAAACTACCCTTTTTTATCCGGCTGAATGTCATCACTATAGTTTTCC
AGTTTAATATCTCCATACTCTCAAAGCATacaatatttcaaatttatcct
TTCAGGTTTAACAAGCAAAATCATGCTGTAGTTGCGTCGATAGCATGTCG
AGATTACAGATTGAATGACCCAAAACAGCAAGTTTAAATGATATTGATAA
ATAATGTCTTAATGTCTTAAATGTCTAAAGGATGGATCAATACTAATACT
AAAGAGACAGATTGCTTCGAAGTTTGAAATTGTAAATGACCACTGGAGTT
GAATTCACCCAAAAAGCCGCACCGTGAATCTTTTTCACCTTAAGAGAACT
GACTCATTATTGTAATAAGACAGCAATAAAATGATGTgccatcaaaaaca
aaacctaatGATTT Run BLAST on NCBI transcript from alignment at scaffold_127:14849..16362 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047414 ID=TCONS_00047414|Name=TCONS_00047414|organism=Clytia hemisphaerica|type=transcript|length=1514bp|location=Sequence derived from alignment at scaffold_127:14849..16362 (Clytia hemisphaerica)
AAATCattaggttttgtttttgatggcACATCATTTTATTGCTGTCTTAT
TACAATAATGAGTCAGTTCTCTTAAGGTGAAAAAGATTCACGGTGCGGCT
TTTTGGGTGAATTCAACTCCAGTGGTCATTTACAATTTCAAACTTCGAAG
CAATCTGTCTCTTTAGTATTAGTATTGATCCATCCTTTAGACATTTAAGA
CATTAAGACATTATTTATCAATATCATTTAAACTTGCTGTTTTGGGTCAT
TCAATCTGTAATCTCGACATGCTATCGACGCAACTACAGCATGATTTTGC
TTGTTAAACCTGAAaggataaatttgaaatattgtATGCTTTGAGAGTAT
GGAGATATTAAACTGGAAAACTATAGTGATGACATTCAGCCGGATAAAAA
AGGGTAGTTTGAAAGGTCCTGTGGTGTAGTCAttaaccttggttgctgca
cagacgattgaggttcgattcccacttgcAGTTGTTCACTTGTCAAATGA
ACAAACCTTTGTCCGTATTAAccctagtctagcaagctagacgactaatt
cagacatagtggaaataaagtcaaaaataatggagggaacaaattttagt
acCACAGCATTACAAACtaaatcgtattatcatataacgtctatactact
gtattacacgcattataaacgaatCCAATCTAGgttaacccatgccatgt
gagggggattgggtagtcagttcaaggtagTTCATTCAATTCATTGAAAG
CAAGAAATGGGCCTGAGAACCTTCTgtaactcaaccaaatagaaaaatta
aaaaaaagtttatcctaCGTTTTTGGCTGTTCTTTTGATGAAGCACGTTT
CTCAATTACACGAgtgattttcctagaaaaagaattttttcacaaagatA
CAAAATACCTGCTCAGAAGTACATTTTGTACGAAAACACATTTACCTTTT
AAAGAGCATATCTGTATATGCAATGACCTGAAGAAAATTGCAAGGTGCCA
TCTAGAAACCATGATTTAAAATCCGTGACAGAAAAACTCATTTCAAAATT
GTACTGCATTTCAGTCTAAGAAAGTAAGAATATGGTTGAAATAATCCACT
ATATTTTTGTTGCAATTCATAAGAATGCTCTGTCCTCGACTGCTTCTCCG
GAGTAAAATAACGGTatgaaacttgatggggattgatattccaatgTTTT
TTATGCCTGGAGAATTGAATTCCATTCGTTTAAAGTTGGGaaactcagtg
gggatgaaaaactAACATgacattttgcagtgaggatttgtttatttgag
taaGGACGAAaattggagtacaattttccaacagggacgattttttggcc
attttttccagtgggacgggggtcccactgggtctgtgagaagagggtgt
tacaatattcttaaaaaatatcTTGTGCAAACAAACAACTCACTGTTGAG
GATCCATCAACCTAACATCACGGCACATCAACTTGTGCTCAacatttttc
tgctttttaccAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047414-exon-scaffold_127-1491911889:14849..16362 | TCONS_00047414-exon-scaffold_127-1491911889:14849..16362 | Clytia hemisphaerica | exon |
| TCONS_00047414-exon-scaffold_127-1510915933:14849..16362 | TCONS_00047414-exon-scaffold_127-1510915933:14849..16362 | Clytia hemisphaerica | exon |
| TCONS_00047414-exon-scaffold_127-1575043694:14849..16362 | TCONS_00047414-exon-scaffold_127-1575043694:14849..16362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_127 | supercontig | scaffold_127:14849..16362 . |
Blast
The following BLAST results are available for this feature:
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