TCONS_00047410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047410
Unique NameTCONS_00047410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047410 ID=TCONS_00047410|Name=TCONS_00047410|organism=Clytia hemisphaerica|type=transcript|length=687bp
NGTCACCCTGATGTGGAGAACGACGGTGTTCTTCCAGCGAAAGTAAAAAG
AGTCAAGTCGTTGCAACCGAAAACTTTCGAAGAAGATGTCAATAACAGTG
CAAaaaaagaagatagaaaaagaaaaaggttgaaaaagttgaataaagAC
TATGGCACACCAACAGatcAAGTAATATGTCTTGACAGCCAGGAATACAT
CAAAAGCTCAGATTTGCACAAGCTTTTATCCACACCTTTAAAGATACCAG
ACACACCCTGGATAATCAATTACATCAATGGTACAGAAAACGAGAGTTCA
ACAGTATCTCCAGATGATCAAATGTCACCTAGCGTCAAAAAACCTAAAGg
tCCTGCTGACAAACTGATGGatgatttttagattttttcagtgctgcaaa
taacggccggttaccggtaattaccggtcattttTAAGCTAATATATGTG
TTTTTTTTCCCGTGAAATTTTGATGGTTTCATTATTAGTGCTTTCTGATT
GAGTAATCACCGGCCAACTTGAAattccttatttgcagcactgttttttt
ttagaatttctcATACGCTTTTGACTAGCAGGTTCGTCGTTGGCAGACAG
GGCATTCttacatttttacatttttacatgtttgtttttttttggggggg
ggtgAAATCACCAAAATCACTTAACATTgacccaccc
Run BLAST on NCBI

protein sequence of TCONS_00047410-protein

>TCONS_00047410-protein ID=TCONS_00047410-protein|Name=TCONS_00047410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
XHPDVENDGVLPAKVKRVKSLQPKTFEEDVNNSAKKEDRKRKRLKKLNKD
YGTPTDQVICLDSQEYIKSSDLHKLLSTPLKIPDTPWIINYINGTENESS
TVSPDDQMSPSVKKPKGPADKLMDDF
Run BLAST on NCBI

transcript from alignment at scaffold_127:240532..245266-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047410 ID=TCONS_00047410|Name=TCONS_00047410|organism=Clytia hemisphaerica|type=transcript|length=4735bp|location=Sequence derived from alignment at scaffold_127:240532..245266- (Clytia hemisphaerica)
NGTCACCCTGATGTGGAGAACGACGGTGTTCTTCCAGCGAAAGTAAAAAG
AGTCAAGTCGTTGCAACCGAAAACTTTCGAAGAAGATGTCAATAACAGTG
CAAGTAAGCGTCTTGATATCACACAATGTTTATGTTGTAATTTGGGAGTG
GAAGTTTCTTGATAATTGTGTTTTTTTGTATGTAAGACTCTTTGAACAAC
ACTACTGAATTAATATTTCCAAGAATGCATTATTGCGACAAAGCTCGAAA
TTCGTGATTCACTTTATTCACTGTTCATCTTTTCAGAAAAAGAAGATAGA
AAAAGAAAAAGGTTGAAAAAGTTGAATAAAGACTATGGCACACCAACAGG
TACCGTTAAAAATCTTTTTTATTTTCCTTGAAGAATACTATATCTTTTTG
CTCTTTTAGAATACCCTTGCACATGCGAAGTTGATGATTCTGAAACATGA
GATGAAGATATTTTAAATTAAATTGAAATTCGCTCTGCTTATTTGTTGTT
ATTGAGCACTTTATTGACAAGTTGGTTTAATTCTTCATTACTAACTCTGA
AACATACAAAATTTTTCTTTTAGATCAAGTAATATGTCTTGACAGCCAGG
AATACATCAAAAGCTCAGTAAGTGTGTGCTCTTTTAATAAGCAATTCTTA
TTTTAACAAGAACCATTTTTGATCTGCACCACATTTAGAATTTCAAAAGA
AAGTCTTTGGTTCCGAGGAGTCAAATGAAAGAAGTAAAGTATGCAACTAA
TAATGATATGTTATTGTTTTAGGATTTGCACAAGCTTTTATCCACACCTT
TAAAGATACCAGACACACCCTGGATAATCAATTACATCAATGGTACAGAA
AACGAGAGTTCAACAGTATCTCCAGATGGTAAGCAGCGAACTGGGGGAAG
GACTTCATGGATAAATCCTTCTTGTGTGTATTGTAATATATTAATATAAG
TATAGTATACAAAGATACTTTAGATGCTAAAAAATGATGTGATGGTTAGA
TGCTTATTATGTATATTGTAAGTAGTATAATACTCATTCTATCATTCCAT
CATACTATCATTCTATCATACTATCATTCCATCATACTATCATACCATCA
TTCTATCATACCATCATTCTATCATACCATCATACTATCATTCTATCATT
CTATCATACCATCATACTATCATTCTATCGTACTATCATTCCATCATACT
ATCATTCTATCATACTATCATTCTATCATTCAATCATACCATCATTCTAT
CATACCATCATTCTATCATTCTATCATACCATCATTCTATCATACCATCA
TATCATCATTCTATCATGCCATCATTCTATCAAACCATCATACTATCAAA
CCATCATACTATCATACCATCATTCTATAATTCTATCATTCTATCATACC
ATCATTCTATCATACCATCATATCATCATTCTATCATGCCATCATTCCCC
CATACCATCATTCTATCATACCATCATTCTATCATACCATCATTCTATCA
TACCATCATTCTATCATTCTATCATTCCATCATACTATCATTCTATCATT
CTATCATACCATCATCCTATCATACCATCATTCTATCATACCATCATCCT
ATCATACCATCATCGCTCTACTATGCGACATTCTATTATACTCTACAAGC
TCCTGTTTTTGATAGAAATTGTACTGGGTGTTTCATAAAAAAGTGAACAA
GTTTGAAGTTAAATTTTGAGCAAAGTTGAAAAGCTATAAATGTAAATTAT
ATTCTATTGGAAAGCAGAAGGGTTAACTTAAATTTGAGCTATTATACTTT
GAAATTGCTCAAGGCTTTCAAAAGTTATTGAGAAAAAAGAACAAATATCA
AATTTCATTTTTGAAAAAACGGTATTTTTGGCAAAAAAGGGGGTATTAAA
TTGGAATTCACAAAAACATAATAAAAAATTGAAATCTCCTATTTATTTTT
ATTGCGGCCTGATATTGATGGAGCTGGCCTATTTAGAAAATATGTGTTGG
TCCAGAAACGCCTTAGTTCAAGATGATTATACTCGAACAAACTCCAAGAA
AATCCTGAGGCGCTGTTGATGCGTAAATTATGGTATTTGTTCTCCTTATA
AAACTTGGCATAGCAAGTACAGAAGAGGTTGTTTTCATAAGATAAACATT
CACGAAACAATCGAATATTTGATAATTAGGTGAAAAAACAACCAATAATC
TTACAAGATTTTAATGGCATAAATAATAAAAGGTGAAACTAACTTTAAAT
GCTTTTAAAACAACATAAACTTTTATTATTGAGAGAAAGAGAGGAGATAA
TTTGAAACCCCTTTTTTGCCAAAAATGACGTGTTTTTTAAAATGAAATTT
TTCGTTGTTTCTTAATATCTTTTGAACGCTTGGAGCAAATTTAATGTATG
ATAGCTCAAAATTTAAGTTAATCTTTACTCTTTCCAATAAAAAAGAATTT
ACGCTGGTAGCATTTCTAGTTCTTTCATAACTTAATGTCAAACTTGTTCT
CTTTTTTATGAAACACCCGGTATTTTCCTTGAGGATTTGTTTACTCTTTT
ATTTTGTTTCTAACATGTGAAGCAGAATTATAATTCGACCTGTCGATTTT
TCTGTCTTCGAAGTAGAATCTTTTCCTTAAAACTTTCAAAATAAAAAAAA
AAATTTATGATCACTTCGGAGACGAATTCTAGAAACTTTTATATTATGTT
TTAGATCAAATGTCACCTAGCGTCAAAAAACCTAAAGGTATGCGTTACAT
TCATAGACAGCATATTGTGTCGAAGAGCCTTTTTCGGGCCAAGATTAAAA
CTATTACTTGAATGGGATAAAATTCTGCGGGGATTAGATTTCGTGGTCGA
GCTCATCCGTGAAATTTTAAGATTTCGTGGGGATTAGATTTTACAGATGA
GGGGTTTCTTGATTTTGCGTTGGAATTTAAGTTCTCAGATCGGGGTACAA
TCATGGTCGATCTATTGAGAATTTAGCTTATATTTCCTCGTTTTTCTAAA
TTTTGAGTTCGGACGAGAAAGTCACTGTTGGGCTAATTGATAAATCTATT
CCAGTATTTCAATTCGGGAGGGGTTAATAGACTTCCAGGCTATATTCTGA
GCCTTATTGGACCCTTCTTGAACTTTAGTCTTCAGTCTAGCATTAAAACT
CAGAGTTAAAACTCTACCCTTCCAACCTAATTTAGAGCGCTTCCAAATCG
CTTGTGGTTATAAGATTTCGTAGGAATTTCCCTTTTCTCTCAAATATTAC
GACCACGATTGTAGAATGGAAGTTTTTTAAAAGGGCCGAAACTTTGAAAT
GAAAAATTTCCAGGAAAATGGAGAAAACTTTTTTCAAATCGAATAATAAG
AGTCATCCTTTCTGAAATGGAGCGAAATATGTGTAATTTTTTAAAAATTG
TTACCTTTAACCGGGGGGGGGGGGGGGAACCCGGCTTTTTGGGGGCAAAG
ACCAAAAATGTTGGGGGGGTTTTTTTTAATTTTTTTTTTTCCCCGGGGGG
GGGGGGGTAGACCTGCTGTTTGGGGGTCAAGACTCACAATGTTCGGAGGG
TTAATTTCTAAAAGTTTTTTTAAATCCTCCAGCTTCCATATTCAAATTTT
TCCTGGAAAAGCTGGTATAGAGAAACTTGGTGGAATCCTCCCATTGAAGC
AAAAAAATTCAAGGGAGACAACTCCCAAATTCATTTTTCGATTACGACAT
TATTTTTTCGAAAAAGTCTTTTTTTTTGGAAAACATGTACGTATTATATA
CCAACAGCAAAAAAGGAACTTTAATTCTGAACAACATTTTTCCTTTCACA
AAGTCGTAAAAAATGAAACAAATAAATCTTATGGGTTCGTAGTACTATTT
GTACCATTTGTTGGTATATAATACGTACATGTTTTCCATTACTTAATGCA
GGATTAGTTCAACACATTATCACATCAAAATCTACTAAATCTGTACAAAT
GTAAAAATACAAAATCTACTCATGTTGTAGAATTACGGAACTTTGATATC
TACTTAGATTTTACTATGCACATGCGTAGACTTTCGTTCTATAAACCATT
AGTCGTTATTACCCGCCAAATACAAAAGGAAATGTGATGTTGAAGCTTAA
AGTCTTAAAAAAATATTCTAAATTGACGTTAGAAAAATAATCACCAATCG
TCTAACGTTACAAAACTTTTTCGAAAAAATACTAACGTCGTAAAGAAATG
AAAATTTATTTTTGGAGGTGGCTCCCTTGAAAAGGTTCTTTAAGGAATAA
CTCCACCAAATTTCGGACCTCTATACCAATTTGAAGTATCCTTATGAATT
TCTGTTGTAAGAGCCTTGAATACCCATGCAAAATAGTGTTGTACAAAAAA
GAAATTCGATACCGTTTTCAATCAAAATTCAATCTTTTCTTTTCTAGGTC
CTGCTGACAAACTGATGGATGATTTTTAGATTTTTTCAGTGCTGCAAATA
ACGGCCGGTTACCGGTAATTACCGGTCATTTTTAAGCTAATATATGTGTT
TTTTTTCCCGTGAAATTTTGATGGTTTCATTATTAGTGCTTTCTGATTGA
GTAATCACCGGCCAACTTGAAATTCCTTATTTGCAGCACTGTTTTTTTTT
AGAATTTCTCATACGCTTTTGACTAGCAGGTTCGTCGTTGGCAGACAGGG
CATTCTTACATTTTTACATTTTTACATGTTTGTTTTTTTTTGGGGGGGGG
TGAAATCACCAAAATCACTTAACATTGACCCACCC

Coding sequence (CDS) from alignment at scaffold_127:240532..245266-

>TCONS_00047410 ID=TCONS_00047410|Name=TCONS_00047410|organism=Clytia hemisphaerica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_127:240532..245266- (Clytia hemisphaerica)
GTCCTGCTGACAAACTGATGGATGATTTTTAGATCAAATGTCACCTAGCG
TCAAAAAACCTAAAGGATTTGCACAAGCTTTTATCCACACCTTTAAAGAT
ACCAGACACACCCTGGATAATCAATTACATCAATGGTACAGAAAACGAGA
GTTCAACAGTATCTCCAGATGATCAAGTAATATGTCTTGACAGCCAGGAA
TACATCAAAAGCTCAAAAAAGAAGATAGAAAAAGAAAAAGGTTGAAAAAG
TTGAATAAAGACTATGGCACACCAACAGNGTCACCCTGATGTGGAGAACG
ACGGTGTTCTTCCAGCGAAAGTAAAAAGAGTCAAGTCGTTGCAACCGAAA
ACTTTCGAAGAAGATGTCAATAACAGTGCAAGTCCTGCTGACAAACTGAT
GGATGATTTTTAGATCAAATGTCACCTAGCGTCAAAAAACCTAAAGGATT
TGCACAAGCTTTTATCCACACCTTTAAAGATACCAGACACACCCTGGATA
ATCAATTACATCAATGGTACAGAAAACGAGAGTTCAACAGTATCTCCAGA
TGATCAAGTAATATGTCTTGACAGCCAGGAATACATCAAAAGCTCAAAAA
AGAAGATAGAAAAAGAAAAAGGTTGAAAAAGTTGAATAAAGACTATGGCA
CACCAACAGNGTCACCCTGATGTGGAGAACGACGGTGTTCTTCCAGCGAA
AGTAAAAAGAGTCAAGTCGTTGCAACCGAAAACTTTCGAAGAAGATGTCA
ATAACAGTGCAAGTCCTGCTGACAAACTGATGGATGATTTTTAGATCAAA
TGTCACCTAGCGTCAAAAAACCTAAAGGATTTGCACAAGCTTTTATCCAC
ACCTTTAAAGATACCAGACACACCCTGGATAATCAATTACATCAATGGTA
CAGAAAACGAGAGTTCAACAGTATCTCCAGATGATCAAGTAATATGTCTT
GACAGCCAGGAATACATCAAAAGCTCAAAAAAGAAGATAGAAAAAGAAAA
AGGTTGAAAAAGTTGAATAAAGACTATGGCACACCAACAGNGTCACCCTG
ATGTGGAGAACGACGGTGTTCTTCCAGCGAAAGTAAAAAGAGTCAAGTCG
TTGCAACCGAAAACTTTCGAAGAAGATGTCAATAACAGTGCAAGTCCTGC
TGACAAACTGATGGATGATTTTTAGATCAAATGTCACCTAGCGTCAAAAA
ACCTAAAGGATTTGCACAAGCTTTTATCCACACCTTTAAAGATACCAGAC
ACACCCTGGATAATCAATTACATCAATGGTACAGAAAACGAGAGTTCAAC
AGTATCTCCAGATGATCAAGTAATATGTCTTGACAGCCAGGAATACATCA
AAAGCTCAAAAAAGAAGATAGAAAAAGAAAAAGGTTGAAAAAGTTGAATA
AAGACTATGGCACACCAACAGNGTCACCCTGATGTGGAGAACGACGGTGT
TCTTCCAGCGAAAGTAAAAAGAGTCAAGTCGTTGCAACCGAAAACTTTCG
AAGAAGATGTCAATAACAGTGCAAGTCCTGCTGACAAACTGATGGATGAT
TTTTAGATCAAATGTCACCTAGCGTCAAAAAACCTAAAGGATTTGCACAA
GCTTTTATCCACACCTTTAAAGATACCAGACACACCCTGGATAATCAATT
ACATCAATGGTACAGAAAACGAGAGTTCAACAGTATCTCCAGATGATCAA
GTAATATGTCTTGACAGCCAGGAATACATCAAAAGCTCAAAAAAGAAGAT
AGAAAAAGAAAAAGGTTGAAAAAGTTGAATAAAGACTATGGCACACCAAC
AGNGTCACCCTGATGTGGAGAACGACGGTGTTCTTCCAGCGAAAGTAAAA
AGAGTCAAGTCGTTGCAACCGAAAACTTTCGAAGAAGATGTCAATAACAG
TGCAAGTCCTGCTGACAAACTGATGGATGATTTTTAGATCAAATGTCACC
TAGCGTCAAAAAACCTAAAGGATTTGCACAAGCTTTTATCCACACCTTTA
AAGATACCAGACACACCCTGGATAATCAATTACATCAATGGTACAGAAAA
CGAGAGTTCAACAGTATCTCCAGATGATCAAGTAATATGTCTTGACAGCC
AGGAATACATCAAAAGCTCAAAAAAGAAGATAGAAAAAGAAAAAGGTTGA
AAAAGTTGAATAAAGACTATGGCACACCAACAGNGTCACCCTGATGTGGA
GAACGACGGTGTTCTTCCAGCGAAAGTAAAAAGAGTCAAGTCGTTGCAAC
CGAAAACTTTCGAAGAAGATGTCAATAACAGTGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030194XLOC_030194Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047410-proteinTCONS_00047410-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047410-exon-scaffold_127-1575043694:245164..245266TCONS_00047410-exon-scaffold_127-1575043694:245164..245266Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1575043694:244918..244980TCONS_00047410-exon-scaffold_127-1575043694:244918..244980Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1575043694:244650..244693TCONS_00047410-exon-scaffold_127-1575043694:244650..244693Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1575043694:244389..244494TCONS_00047410-exon-scaffold_127-1575043694:244389..244494Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1575043694:242530..242562TCONS_00047410-exon-scaffold_127-1575043694:242530..242562Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1575043694:240532..240869TCONS_00047410-exon-scaffold_127-1575043694:240532..240869Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1510915933:245164..245266TCONS_00047410-exon-scaffold_127-1510915933:245164..245266Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1510915933:244918..244980TCONS_00047410-exon-scaffold_127-1510915933:244918..244980Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1510915933:244650..244693TCONS_00047410-exon-scaffold_127-1510915933:244650..244693Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1510915933:244389..244494TCONS_00047410-exon-scaffold_127-1510915933:244389..244494Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1510915933:242530..242562TCONS_00047410-exon-scaffold_127-1510915933:242530..242562Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1510915933:240532..240869TCONS_00047410-exon-scaffold_127-1510915933:240532..240869Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1491911889:245164..245266TCONS_00047410-exon-scaffold_127-1491911889:245164..245266Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1491911889:244918..244980TCONS_00047410-exon-scaffold_127-1491911889:244918..244980Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1491911889:244650..244693TCONS_00047410-exon-scaffold_127-1491911889:244650..244693Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1491911889:244389..244494TCONS_00047410-exon-scaffold_127-1491911889:244389..244494Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1491911889:242530..242562TCONS_00047410-exon-scaffold_127-1491911889:242530..242562Clytia hemisphaericaexon
TCONS_00047410-exon-scaffold_127-1491911889:240532..240869TCONS_00047410-exon-scaffold_127-1491911889:240532..240869Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_127supercontigscaffold_127:240532..245266 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0878751	0.0901615	0.304108	0.725497	9.41264	10.5824	11.97	18.6868	11.4729	8.82899	10.2454	9.86594	6.996	6.5964	0.270678	0.53686	0.464132	0.856874	0.471266	0.214355	0.28453	0.785794	0.204838	0.665499	1.93092	8.69015	0.263372	0.136753	1.11634	0.435243
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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