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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047401 ID=TCONS_00047401|Name=TCONS_00047401|organism=Clytia hemisphaerica|type=transcript|length=3736bpRun BLAST on NCBI transcript from alignment at scaffold_127:31269..43232- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047401 ID=TCONS_00047401|Name=TCONS_00047401|organism=Clytia hemisphaerica|type=transcript|length=11964bp|location=Sequence derived from alignment at scaffold_127:31269..43232- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047401 vs. Swiss-Prot (Human)
Match: ERAP1 (Endoplasmic reticulum aminopeptidase 1 OS=Homo sapiens GN=ERAP1 PE=1 SV=3) HSP 1 Score: 389.808 bits (1000), Expect = 9.536e-117 Identity = 250/903 (27.69%), Postives = 453/903 (50.17%), Query Frame = 1
Query: 511 YDEIRLPTNLSPTNYVLYLSIDMAKKYYNGLVKITFDCVQQTDRIILHSSKTKNTKVEVKDG------KEPISVLDTQYNLQREMMVITLGSNLTFGNVYTLLVSFERPLRYTDNDGFYLTDYVDSNSLKHMMANTDFEPSSARRAFPCFDEPAYKATFEI-FAQHPKNDYFALSNMPVKQKIELGTDRTETHFSITPKMSTYLVGWVITSYENVQTTGPNNVKIRVFAPKGRLSETNFAEGMAPYCIQYFEDKIRINYTLPKMDLVPYSKMSAGADEVWGMIIFTESSLLYDSKIGNSNQLFRIATTVCHEISHMWFGDLVTMKWWNDLWLKESFAAYLEYLPVEKRFPDWDLPSKIYSDGTVSALSYDSSIYTHPIRTLEKDPKKMRQNYDAITYEKGAAVVSMLANYIGDDKFFEGVNSFLNKYKYGNADAHQFWRSMEKSVKT--------------------------VDVVSLMNSWVNQAGYPVILMKAKKNRSGVEVSQERFVFQNKTVTNLTKDFDTKWEVPIAIQTSDDENITRSLLTDRKGSIEVNLTNSDWFIGNYKATGFYRTYYDKENWRALLKVLEDNHETLSVVDRASLLNDVAAFSNFNFMELASSLEFTTYLSQERHPIPWGIGLGHIYIIRGLFYETNLKKC---FDAYIDKLISPVLEDLNKTPKHTHLQKLLITKLTSAAVTINKQPLTDEIVEKFLKYLVRDGNYHIPADLLLTVFSAGIKHGQAYEWDALMNRFKKAKSLMEQSLILNSLVATTDKKLLKRYLSYATNSSNIPSFMAQTVLRGLCAHHESHAMAWKYVQDNY--LALDAENSAEPILTRYLLNSCMLGKTQQDLDEAEAFVK--RYNLQKDIAVLRNIEAIKYSMELM-KEKDSVEKWLK 3096
+++IRLP + P +Y L + ++ + G K+ Q T IILHS + ++ ++ G +EP+ VL+ + ++E + + L G YT+++ + L T + GFY + Y ++A+T FEP++AR AFPCFDEPA+KA+F I + P+ + A+SNMP+ + + + E HF +T KMSTYLV ++I+ +E+V + VK+ V+A ++++ ++A A ++++ED I Y LPK DL +GA E WG+ + ES+LL+D++ +++ I TV HE++H WFG+LVTM+WWNDLWL E FA ++E++ V P+ + + A+ D+ +HP+ T ++P ++R+ +D ++Y+KGA +++ML Y+ D F G+ +L K+ Y N W SM T VDV ++MN+W Q G+P+I + + V + QE ++ ++ D W VP+ TS + + R LL K + + +W N G+Y +Y+ + W +L +L+ H +S DRASL+N+ + + + +L+ + YL E +P GL + + L + ++ + F A++ +L+ +++ T + + +++L ++L A N QP F K+ +GN +P D+ L VF+ G + + WD L ++++ + S E+S I +L T +K+ L+ L + I + +L + + + +AW++++ N+ L E + I ++ + T+ L+E + F + N + V + IE I+ ++ M K D + WL+
Sbjct: 49 WNKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQVLE---HPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFH-GFYKSTYRTKEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPR--HLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGK-CFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVRGR--NVHMKQEHYM----KGSDGAPDTGYLWHVPLTFITSKSDMVHRFLL-KTKTDVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQSTEG--WDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSI-AHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQ 934 The following BLAST results are available for this feature:
BLAST of TCONS_00047401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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