TCONS_00047375 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047375
Unique NameTCONS_00047375
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047375 ID=TCONS_00047375|Name=TCONS_00047375|organism=Clytia hemisphaerica|type=transcript|length=207bp
CCTTCAGACATCTTTTCAATGTTTGATCTTCAATGATGTCATTCAGGTAT
TGGAGTTTAGATATACCAGCATAGAGTGGTGCGTAGTCAGTTTCTTTGTC
CAAATACTCCGTGAATAACATTGCGTCACCGATCGAACGGTAATTATACA
TGGAGAATTCAAAAAGGTCGGAGATGAGATCAGCTCTATCCAATGGCTGG
agtttct
Run BLAST on NCBI

transcript from alignment at scaffold_127:47786..48303+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047375 ID=TCONS_00047375|Name=TCONS_00047375|organism=Clytia hemisphaerica|type=transcript|length=518bp|location=Sequence derived from alignment at scaffold_127:47786..48303+ (Clytia hemisphaerica)
CCTTCAGACATCTTTTCAATGTTTGATCTTCAATGATGTCATTCAGGTAT
TGGAGTTTAGATATACCAGCATAGAGTGGTGCGTAGTCAGTTTCTTTGTC
CAAATACTCCGTGAATAACATTGCGTCACCGATCGAACGGTAATTATACC
TAAAAGTGAAACATCATTTATATAAAATAAACATTGTTTTTAAGATCGGC
CAACTTTTTCATGGCTTTTTTCACGTATGGTCTGACAATTTAGAAAAAGT
CTCCCTTCTTATTTACCCGTATTACTAATCCAAAATTGAATTGGTCAATA
TATAAACATTTTTGTGAATTCCCGTTGTCACTAAAGAAAGAGACGAAAAA
TTCCATGAAAAAAAGGAAAGCTGGAGTGATATAAAGCAACTAGAGAAGTT
GTTTGAGACCTTtcactgaaaaatatataatataataaataCTTTGAAAC
ATTAACATACATGGAGAATTCAAAAAGGTCGGAGATGAGATCAGCTCTAT
CCAATGGCTGGagtttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030183XLOC_030183Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047375-exon-scaffold_127-1491911889:47786..47930TCONS_00047375-exon-scaffold_127-1491911889:47786..47930Clytia hemisphaericaexon
TCONS_00047375-exon-scaffold_127-1510915933:47786..47930TCONS_00047375-exon-scaffold_127-1510915933:47786..47930Clytia hemisphaericaexon
TCONS_00047375-exon-scaffold_127-1575043694:47786..47930TCONS_00047375-exon-scaffold_127-1575043694:47786..47930Clytia hemisphaericaexon
TCONS_00047375-exon-scaffold_127-1491911889:48242..48303TCONS_00047375-exon-scaffold_127-1491911889:48242..48303Clytia hemisphaericaexon
TCONS_00047375-exon-scaffold_127-1510915933:48242..48303TCONS_00047375-exon-scaffold_127-1510915933:48242..48303Clytia hemisphaericaexon
TCONS_00047375-exon-scaffold_127-1575043694:48242..48303TCONS_00047375-exon-scaffold_127-1575043694:48242..48303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_127supercontigscaffold_127:47786..48303 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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