TCONS_00047371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047371
Unique NameTCONS_00047371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047371 ID=TCONS_00047371|Name=TCONS_00047371|organism=Clytia hemisphaerica|type=transcript|length=731bp
NNATTGCTGCCATATTAGATGATTTAGATCAAGCTGATTtagaatctttt
caaaattcatttgcCAATAAACCTGCTGAATATGTATCACAACAAATATA
TTTGATGAAGAAAGAATTTAtacagaaaaataaaatcaagattgaaaaag
aaaaagaaactctTTCAAAACAACTAGATGATGAGACGAAAAAATATGAT
TCTCAAAAGGAAAAAGTTCAGCAAATTCTAAAGCGCAAAGATGATGAAAT
TTCTCTTtatgaacaaaaaattatggATCTTGACGAGCAGTTAGGGGAGT
TACCAGAACTTGGTGAGAATTAGATGACAATTCAAATAAATTTGGTGTTT
ATATTTTGTATTGTTTATTTTAACAgctcttaatttttttgctttatttg
atTTCCCTTATATTTGGATATTTAGAAATACTTTAGAAATAGGATATTTT
GGCGGATGCTGGCGGATGTCATTCAAATGAACGAAATGAAACTTCAAACA
GTACCAAATAATTACACTTATTCTTAATGCAAGAACTAGAGTTAtgaaat
aatatttgaaaataacatTGAAACCTGGACATTTTTGTGTAATAGATtta
gcatttttcattttcattgtttttctttAGAGTTAGACAGCATTTTTATT
CCTTGTATTATAGATATTACtgattcattttcaaaataacctTAGTTACA
AATTTTGATTActgaaataataaaacaaaat
Run BLAST on NCBI

protein sequence of TCONS_00047371-protein

>TCONS_00047371-protein ID=TCONS_00047371-protein|Name=TCONS_00047371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
IAAILDDLDQADLESFQNSFANKPAEYVSQQIYLMKKEFIQKNKIKIEKE
KETLSKQLDDETKKYDSQKEKVQQILKRKDDEISLYEQKIMDLDEQLGEL
PELGEN
Run BLAST on NCBI

transcript from alignment at scaffold_126:252439..253169

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047371 ID=TCONS_00047371|Name=TCONS_00047371|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at scaffold_126:252439..253169 (Clytia hemisphaerica)
attttgttttattatttcagTAATCAAAATTTGTAACTAaggttattttg
aaaatgaatcaGTAATATCTATAATACAAGGAATAAAAATGCTGTCTAAC
TCTaaagaaaaacaatgaaaatgaaaaatgctaaATCTATTACACAAAAA
TGTCCAGGTTTCAatgttattttcaaatattatttcaTAACTCTAGTTCT
TGCATTAAGAATAAGTGTAATTATTTGGTACTGTTTGAAGTTTCATTTCG
TTCATTTGAATGACATCCGCCAGCATCCGCCAAAATATCCTATTTCTAAA
GTATTTCTAAATATCCAAATATAAGGGAAatcaaataaagcaaaaaaatt
aagagcTGTTAAAATAAACAATACAAAATATAAACACCAAATTTATTTGA
ATTGTCATCTAATTCTCACCAAGTTCTGGTAACTCCCCTAACTGCTCGTC
AAGATccataattttttgttcataAAGAGAAATTTCATCATCTTTGCGCT
TTAGAATTTGCTGAACTTTTTCCTTTTGAGAATCATATTTTTTCGTCTCA
TCATCTAGTTGTTTTGAAagagtttctttttctttttcaatcttgatttt
atttttctgtaTAAATTCTTTCTTCATCAAATATATTTGTTGTGATACAT
ATTCAGCAGGTTTATTGgcaaatgaattttgaaaagattctaAATCAGCT
TGATCTAAATCATCTAATATGGCAGCAATNN

Coding sequence (CDS) from alignment at scaffold_126:252439..253169

>TCONS_00047371 ID=TCONS_00047371|Name=TCONS_00047371|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_126:252439..253169 (Clytia hemisphaerica)
CTAATTCTCACCAAGTTCTGGTAACTCCCCTAACTGCTCGTCAAGATcca
taattttttgttcataAAGAGAAATTTCATCATCTTTGCGCTTTAGAATT
TGCTGAACTTTTTCCTTTTGAGAATCATATTTTTTCGTCTCATCATCTAG
TTGTTTTGAAagagtttctttttctttttcaatcttgattttatttttct
gtaTAAATTCTTTCTTCATCAAATATATTTGTTGTGATACATATTCAGCA
GGTTTATTGgcaaatgaattttgaaaagattctaAATCAGCTTGATCTAA
ATCATCTAATATGGCAGCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030179XLOC_030179Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047371-proteinTCONS_00047371-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047371-exon-scaffold_126-1491911889:252439..253169TCONS_00047371-exon-scaffold_126-1491911889:252439..253169Clytia hemisphaericaexon
TCONS_00047371-exon-scaffold_126-1510915933:252439..253169TCONS_00047371-exon-scaffold_126-1510915933:252439..253169Clytia hemisphaericaexon
TCONS_00047371-exon-scaffold_126-1575043694:252439..253169TCONS_00047371-exon-scaffold_126-1575043694:252439..253169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_126supercontigscaffold_126:252439..253169 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
151.426	143.091	81.109	73.4048	60.9503	37.2273	37.5733	38.0388	28.0637	19.7927	20.1753	15.073	9.13068	5.11669	13.3531	13.0874	27.8575	20.8657	5.34638	5.82141	30.7534	28.2701	80.6548	72.9727	7.22413	14.8485	24.3235	16.3112	39.1512	41.3492
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014039Transl_elong_EFTs/EF1B_dimer
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
cellular_component GO:0005622 intracellular
molecular_function GO:0003746 translation elongation factor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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