TCONS_00047364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047364
Unique NameTCONS_00047364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047364 ID=TCONS_00047364|Name=TCONS_00047364|organism=Clytia hemisphaerica|type=transcript|length=457bp
TATAGGTTTGTTgagtgtaaaattttaattttcaaaaaagcacgCGGTGC
GAGAACACGTGTCTTCAAAAACCTAAAAGATaagtatttttctttcattg
ttaCTTTATCGTTTATTTATTGCTTTTTTGCCTNCCAGCCATAACGATTT
TCGCTTAGCTGTATGAaggtaaaaatgggaaagaatgAGACAGCGTATTC
AGGAAAATTCATGGATGTCGTCTACTTTCAAGTACTTTAAACGGTGCTGT
TTTTAGTACCAGCCATAAATATTTTATAAGCTCAGCTGTATGATAGAGTG
AAAAGTGAGTGACTAtccatgaaaatgaaaatctatttatgttgtgtata
aaattccagGTCTTCCAANAATTTTATTGAAGGAAATGGAAAGGAATAAG
TAAGACAGCGTATTCAGGAAAATTCATGGATGTGGTCTACTCTCAAGTAC
TTTAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_126:112568..113024

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047364 ID=TCONS_00047364|Name=TCONS_00047364|organism=Clytia hemisphaerica|type=transcript|length=457bp|location=Sequence derived from alignment at scaffold_126:112568..113024 (Clytia hemisphaerica)
GTTTAAAGTACTTGAGAGTAGACCACATCCATGAATTTTCCTGAATACGC
TGTCTTACTTATTCCTTTCCATTTCCTTCAATAAAATTNTTGGAAGACct
ggaattttatacacaacataaatagattttcattttcatggaTAGTCACT
CACTTTTCACTCTATCATACAGCTGAGCTTATAAAATATTTATGGCTGGT
ACTAAAAACAGCACCGTTTAAAGTACTTGAAAGTAGACGACATCCATGAA
TTTTCCTGAATACGCTGTCTcattctttcccatttttacctTCATACAGC
TAAGCGAAAATCGTTATGGCTGGNAGGCAAAAAAGCAATAAATAAACGAT
AAAGtaacaatgaaagaaaaatacttATCTTTTAGGTTTTTGAAGACACG
TGTTCTCGCACCGcgtgcttttttgaaaattaaaattttacactcAACAA
ACCTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030172XLOC_030172Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047364-exon-scaffold_126-1491911889:112568..113024TCONS_00047364-exon-scaffold_126-1491911889:112568..113024Clytia hemisphaericaexon
TCONS_00047364-exon-scaffold_126-1510915933:112568..113024TCONS_00047364-exon-scaffold_126-1510915933:112568..113024Clytia hemisphaericaexon
TCONS_00047364-exon-scaffold_126-1575043694:112568..113024TCONS_00047364-exon-scaffold_126-1575043694:112568..113024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_126supercontigscaffold_126:112568..113024 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.370525	0.761697	0	0	0	0	0.294985	0.385649	0.427503	0.288216	0.863612	1.14374	0.802088	0.364437	0.512142	0.434172	0	0.640201	1.24689	1.97485	0	0.732301	0.293257	0.41828	0.437593	0.504479	0	0.323544
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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