TCONS_00047363 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047363
Unique NameTCONS_00047363
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047363 ID=TCONS_00047363|Name=TCONS_00047363|organism=Clytia hemisphaerica|type=transcript|length=233bp
CATAGACAACGTCTAGATCATCTTGAAGGAGACTCACATCTGCAGCGCAA
GATATTGCCTTCATAAGTCTTGTGTCGTCAGCAAAAGATGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAATCTTTTCGTTTA
TGTCACTAATCATTACCAGAAACAAGAGGGGGCCCAGAACTGAGCCTTGT
GGAACTCCGCTTGTAACTTTCGCTTCatctgat
Run BLAST on NCBI

transcript from alignment at scaffold_126:83262..83494

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047363 ID=TCONS_00047363|Name=TCONS_00047363|organism=Clytia hemisphaerica|type=transcript|length=233bp|location=Sequence derived from alignment at scaffold_126:83262..83494 (Clytia hemisphaerica)
atcagatGAAGCGAAAGTTACAAGCGGAGTTCCACAAGGCTCAGTTCTGG
GCCCCCTCTTGTTTCTGGTAATGATTAGTGACATAAACGAAAAGATTAAA
CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTTT
TGCTGACGACACAAGACTTATGAAGGCAATATCTTGCGCTGCAGATGTGA
GTCTCCTTCAAGATGATCTAGACGTTGTCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030171XLOC_030171Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047363-exon-scaffold_126-1491911889:83262..83494TCONS_00047363-exon-scaffold_126-1491911889:83262..83494Clytia hemisphaericaexon
TCONS_00047363-exon-scaffold_126-1510915933:83262..83494TCONS_00047363-exon-scaffold_126-1510915933:83262..83494Clytia hemisphaericaexon
TCONS_00047363-exon-scaffold_126-1575043694:83262..83494TCONS_00047363-exon-scaffold_126-1575043694:83262..83494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_126supercontigscaffold_126:83262..83494 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.41109	6.46386	10.6347	7.71216	8.1453	8.84843	5.17693	9.69316	9.5444	8.73412	6.03966	11.857	11.6286	9.09215	3.00735	5.97313	4.87328	9.36969	5.9497	10.8006	6.19618	5.69673	5.03965	4.63236	7.41527	5.52383	12.2824	13.1645	12.5813	9.17818
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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