TCONS_00047356 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047356
Unique NameTCONS_00047356
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047356 ID=TCONS_00047356|Name=TCONS_00047356|organism=Clytia hemisphaerica|type=transcript|length=757bp
TCTCCATCATCATCTTGTCTCGTCTCCAGATCTTTGATGGAATCCACGTT
TTGAACGTCTTTCAATGATAACCCTAGATCTTTAACATCGAGTTTCTTTA
AAACAACTTTAACATCTCGCTGAATAATTTCCTCAAATATTTTTCCCGAT
GGCTGTCTTTCACAGACAGGGCCTGTCCGCATGGTTGGTTTTATGCCAAC
TTGCGACTCTGACGTCACAGAATCAGTATCAATGGTAATTCTGTCAACAA
TAGTTTTCTTTAAGTTGGTTTGCTGCGTAAAATTTCCAAATCTAGCATCT
TGGATAGGAATGTGTACACCTCTTTTACGTAAATTATAGGCTTTTTGAAA
CGAAACATCTccgttttctttgattttcaaattaacAGGTTCTGGAGCTT
TGATCCGGACATCCAATTCTTTACCTAGTAAGTTAGCTTTCGGTTTCGGC
TTCCGTAATTTTTCACTAGGTGATTGTTTGGTTTTCCAATTAGATGGCAT
ACAAATGCGTTTTCTTTTCTTGCGCGGCCGGCGGTTGTTTTTGTGCGAGG
GACTGGTCTCGGGTTTTGCCGACTTAACATTCTGTTTCGCCCTTTGTGAT
TTCCGTTCGTTTTGCATTTCCGTTATGATTTCCGTAAGTACCGTATCATT
TTCGATTTCCGGATTACTGACTTCAGTTGGGATAGGCGAGATATCGGAAC
ATGAGCCGTCGTTCTTCTCTTCTTTCTCAGAATCTGGAGTCtgactttca
ctttcgc
Run BLAST on NCBI

transcript from alignment at scaffold_126:217722..218574-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047356 ID=TCONS_00047356|Name=TCONS_00047356|organism=Clytia hemisphaerica|type=transcript|length=853bp|location=Sequence derived from alignment at scaffold_126:217722..218574- (Clytia hemisphaerica)
TCTCCATCATCATCTTGTCTCGTCTCCAGATCTTTGATGGAATCCACGTT
TTGAACGTCTTTCAATGATAACCCTAGATCTTTAACATCGAGTTTCTTTA
AAACAACTTTAACATCTCGCTGAATAATTTCCTCAAATATTTTTCCCGAT
GGCTGTCTTTCACAGACAGGGCCTGTCCGCATGGTTGGTTTTATGCCAAC
TTGCGACTCTGACGTCACAGAATCAGTATCAATGGTAATTCTGTCAACAA
TAGTTTTCTTTAAGTTGGTTTGCTGCGTAAAATTTCCAAATCTAGCATCT
TGGATAGGAATGTGTACACCTCTTTTACGTAAATTATAGGCTTTTTGAAA
CGAAACATCTCCGTTTTCTTTGATTTTCAAATTAACAGGTTCTGGAGCTT
TGATCCGGACATCCAATTCTTTACCTAGTAAGTTAGCTTTCGGTTTCGGC
TTCCGTAATTTTTCACTAGGTGATTGTTTGGTTTTCCAATTAGATGGCAT
ACAAATGCGTTTTCTTTTCTTGCGCGGCCGGCGGTTGTTTTTGTGTGAGG
GACTGGACTCGGGTTTTGCCGACTTAGCATTCTGTTTCGCCTTTTGTGAT
TTCCGTTCGTTCNTCTTGCGCGGCCGGAGGTTGTTTTTGTGCGAGGGACT
GGTCTCGGGTTTTGCCGACTTAACATTCTGTTTCGCCCTTTGTGATTTCC
GTTCGTTTTGCATTTCCGTTATGATTTCCGTAAGTACCGTATCATTTTCG
ATTTCCGGATTACTGACTTCAGTTGGGATAGGCGAGATATCGGAACATGA
GCCGTCGTTCTTCTCTTCTTTCTCAGAATCTGGAGTCTGACTTTCACTTT
CGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030166XLOC_030166Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047356-exon-scaffold_126-1575043694:218042..218574TCONS_00047356-exon-scaffold_126-1575043694:218042..218574Clytia hemisphaericaexon
TCONS_00047356-exon-scaffold_126-1575043694:217722..217945TCONS_00047356-exon-scaffold_126-1575043694:217722..217945Clytia hemisphaericaexon
TCONS_00047356-exon-scaffold_126-1510915933:218042..218574TCONS_00047356-exon-scaffold_126-1510915933:218042..218574Clytia hemisphaericaexon
TCONS_00047356-exon-scaffold_126-1510915933:217722..217945TCONS_00047356-exon-scaffold_126-1510915933:217722..217945Clytia hemisphaericaexon
TCONS_00047356-exon-scaffold_126-1491911889:218042..218574TCONS_00047356-exon-scaffold_126-1491911889:218042..218574Clytia hemisphaericaexon
TCONS_00047356-exon-scaffold_126-1491911889:217722..217945TCONS_00047356-exon-scaffold_126-1491911889:217722..217945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_126supercontigscaffold_126:217722..218574 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.8998	10.7253	11.7606	9.50064	0.624323	0.418985	0.468814	1.33252	0.264177	0.797149	0.24392	0	0.452814	0	0.802599	0.230399	0.256043	0.0149363	0.238981	0.956103	0.395597	0.646819	5.80866	3.43655	28.9209	15.1671	0.712972	0.0773386	3.16348	1.87146
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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