TCONS_00047353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047353
Unique NameTCONS_00047353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1122

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047353 ID=TCONS_00047353|Name=TCONS_00047353|organism=Clytia hemisphaerica|type=transcript|length=1122bp
CCAAGTTAATGGTCTATTTACACGACACGATAGATGTGTATAAATAGCCA
GGATAATTCTTACATTTCCATCGTTCAAGTTTATTTGGATTTATCAATCA
CCATTTGAAAAGACTTCAGGACAAATATGAGAACTTTCGCGATTCTTCTT
GCCGTGATACTCACAGCCTCGGCAAACCATTTCAATTTGGAATTCGAACA
AGACGgttcaaaatatattgaaaaagttgatataTTCAAGAAAACTGGAG
TCATTGTGTATGATGTACCACGACATAGTAACACTTCGGCTATGACGCTC
TTAAAAGATTACAATCTGAGATTGAATGTGATGAAAGATGTTGTTCAAAA
AAGATGTTATGTCTACCCGATGGAGAAAAATGAACCAACTCTGGATTCCG
TTGAGAAAGGATTTGAAATGGTAAAAGGAAAATTCCCTAGCAACAAGTTC
TTGGTAAATCAATTGAACATGTTTGCACAGGACGAAGTGGATACATCAAC
CCTGTCCAAAGCAGTGATCACTTTCTGTCAAAACTATAAAATTCTCAATG
TTGAATTTTATTCCGAACAACAAGCAGAAAAACTCATGCAACAAAAAATC
AAACAACATTTCTCCACACGTTCAAAACGAAGAGATGTACACGTCGGTTC
TTTCATGGCTTGCCAAGACGGATCAACAATGACAGAGCAATTGAATGATC
TGGTCAGATGTTGGAACGCAAAAAGAGTTGACATGATCAAAACTCGATGT
GACATCAAATACTGGAAGATCTGTGGCAACAATGTTCATTTCGAGACATT
GACATGCAAAGCAGCCGGTAACGAACGTCACGCTTGTGTCATTCCTGAAC
ACACACGAGCTAATGTTATTTGCTGTAGAAATAAATGTATGTTGTAAATT
GGCAATAAATATGCTTTGGTTTCTCAAGATTGCAAAGAGTTAGAACCTCA
ATGATTTTGATTCTCCAAAGCTTCCAAATGTTCGTAAtcctgttcttaat
tttttgacctcgaagccttgtgttcttatatactttgttgttataaaaaa
aaagtgtattcttTTTCGCAGGACTATTCGCAAATTCTTCGCTACGGCAT
GACGTCAGAGCTGGGGGGGGGG
Run BLAST on NCBI

transcript from alignment at scaffold_126:142460..145908-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047353 ID=TCONS_00047353|Name=TCONS_00047353|organism=Clytia hemisphaerica|type=transcript|length=3449bp|location=Sequence derived from alignment at scaffold_126:142460..145908- (Clytia hemisphaerica)
CCAAGTTAATGGTCTATTTACACGACACGATAGATGTGTATAAATAGCCA
GGATAATTCTTACATTTCCATCGTTCAAGTTTATTTGGATTTATCAATCA
CCATTTGAAAAGACTTCAGGTAATTATTAATTTTATGCCATAAAGCTTAT
ATTTCCTAGACTATAATGGTTCTAGATCAAGCTGAATTTATGCAAAATCT
TCAATAATGTTTACATAGGCAATATTTTTCACACATCAAGCGGAATATAT
ATACTACACGTCCTCCGGGACGTGCTAAGAACAATCTAGGCCTTCTGATG
AAAACCTCCTCAGAAAAATCTTGAAAATTGCTACTTAATAGTAAAATTTA
GAACATATATAAGAACATTTTATACCTAGTTTTTAGAAAGAAATTTTGAA
ATGAATAAAAACGATTACAAACATATTTTTTTTAAATGATATTATTCAAG
TTTTAGATTTTTATGCAATATTTTAATATTTTTATTTTTTTGTTGCAGGA
CAAATATGAGAACTTTCGCGATTCTTCTTGCCGTGATACTCACAGCCTCG
GTAAGTTGTTGCAATTTTCACCAGTTGCTTTTAAAAACGCATTTCCATTT
GTACTGTGAGCAAGTGGGACATTTTGAAGAGGAGTAAAACTCTTTTTCCT
GCTTGCTAACGCTAACGGGATATATGCGGTAATGCTAGGACGCCCAAAAG
CGTGGCAAGTTATATCTCAGTCGATAACTTACACTCGAAAGGCTGTAGGT
AGGTCACGATCATCGTTCCACTTAACGAATAATTAGCAAAATACATGTAA
ATCAAATTGCAGTTAAAGTCATTGAGTAAATGGAATGTGGCTAGATGTGG
TGCTCCACCCCACGCGAAATCAACCCAGAAAGCTAGAGCTAACACAAATG
GATTATTTCCCCCGCTGTACGGTTGCTAATGACCCTAGTCCTCTCCGGGC
CGAGTCCTCAAATGATTATGTTTTTTTTACTCTGAAACCTCGTTTTTCTG
GTGTAGGCTTGTGTTTGTGTTTGCGTTTCTTAGGAATCTTGTTTGTCGTA
AAACAAAATGTTGTCAGTATTTTCTCGTGTTTATATTTTAGGCAAACCAT
TTCAATTTGGAATTCGAACAAGACGGTTCAAAATATATTGAAAAAGTTGA
TATATTCAAGAAAACTGGAGTCATTGTGTATGATGTACCACGACATAGTA
ACACTTCGGCTATGACGCTCTTAAAAGATTACAATCTGGTAAAATATAAA
GTTAAACTAAACTCCTTTTGAAACTTTATCTAATGGTAATGGTCTCTCCA
TAATTTCCAAATTTCCAGAAATCTGCGATGGAGTGCTATTTTGCTTGGCT
CGGGATTGTGCGTCGAGCACTTCCCCGTATTTTATCTTGTTACGGAAAAT
AAACCTATTTTTTCAAATTTTCTATTCATGATATCCATGACGTAATCTTT
TTTACGGAAACCGTCTAAAGTTGTATTTTGTATTTCTATATGTTTTCCTA
ATTTTTTAGAGATTGAATGTGATGAAAGATGTTGTTCAAAAAAGATGTTA
TGTCTACCCGATGGAGAAAAATGAACCAACTCTGGATTCCGTTGAGAAAG
GATTTGAAATGGTAAGCTACTTTTACATCGGTTGTATTGGTCCGAGCAAA
TTCATCAGCTGTCTTTGATATTCTTCGATATTTGATCTAAATCACTCCAG
AGTAAACAACATACCGGAAAAAGTTGTTTCTATTAACCCAGTGCAGTGAA
AAAATGTTATTGTTACCAAGGAAGATTGGGATTAAAATATAACAAATCTA
AAAATGCAATAGATTTGAAGAACCAAACTGAAAGTAAAGTAAAAAGTAAG
CCTTTTTGGACCGAGTTGACCGTATATATTTTTTCGAATGTAATTTAACC
CCGATTAACTTTGTCTCGCATTATGGCATTGCATAGGGTGTTGTTTTTAG
CTTACATCGATTTTTCCTGCATACGTCATCTGAAAATAAGTCTTCCATTT
TTTATAGGTAAAAGGAAAATTCCCTAGCAACAAGTTCTTGGTAAATCAAT
TGAACATGTTTGCACAGGACGAAGTGGATACATCAACCCTGTCCAAAGCA
GTGATCACTTTCTGTCAAAACTATAAAATTCTCAATGTTGAATTTTATTC
CGAACAACAAGCAGAAAAACTCATGCAACAAAAAATCAAACGTATGTAAA
TAATATAGTACCTCATCGGTAGAAAATTCGTCGGTTAAAAAATTCGTCGG
CAAAAAAAATTCGTCGGCAAAAAACTTCGTCACTTGCCAATAATTTCGTC
ACTTCTTGCCAACTTTTTTTGCTAAAATACCTTATCGGTAGAATATTTGT
CGGCAAAAATATTCGTCGGCAAAAAAAATTCGTCGGTAAAAAATTTCGTC
ACCAAGCGATTTTTTCGTCACTTTTTACCGACGAGTTTTCTACCGTTAAG
GTACTCTTTTAAATTTCTTTTTTTTTATAAAAGTGTAAGTGNCGTCACTT
TTTACCGACGAATTTTCTACCGATAAGGTACTCTTTTAAATCTCTTTTTT
TTATAAAAGTGTAAGTGAATTTCGGGCAAGATGAGCAGAAGACCTCACTA
GCTCGATTGTTACTTTGACCACTTTGACTTGGGGTGACATTTCCCAGTAA
AACCCTTACTTATTTACAGTAAGGAATATTGTATTTGTAGAGATAAAGTT
TATTTACTTAAAATCTGTACAGGACAAGCTTAGATCACACTATAATGGAT
TTTTTTCATCCAAGCTTTCTATGAATTGTTCTTAAAATTCTCATCGAAAA
TGGTCATTTATAGCTGTTTTATGCAAGTTTTTTCTTTTAAATAGTATTTT
CTTCTTATATAAAGTCCATTATTGTCCTTTAAAACTGTTCTTAATTCTCA
TAAAAACGCGTGTATCTATCTCTATCTTCAGAACATTTCTCCACACGTTC
AAAACGAAGAGATGTACACGTCGGTTCTTTCATGGCTTGCCAAGACGGAT
CAACAATGACAGAGCAATTGAATGATCTGGTCAGATGTTGGAACGCAAAA
AGAGTTGACATGATCAAAACTCGATGTGACATCAAATACTGGAAGATCTG
TGGCAACAATGTTCATTTCGAGACATTGACATGCAAAGCAGCCGGTAACG
AACGTCACGCTTGTGTCATTCCTGAACACACACGAGCTAATGTTATTTGC
TGTAGAAATAAATGTATGTTGTAAATTGGCAATAAATATGCTTTGGTTTC
TCAAGATTGCAAAGAGTTAGAACCTCAATGATTTTGATTCTCCAAAGCTT
CCAAATGTTCGTAATCCTGTTCTTAATTTTTTGACCTCGAAGCCTTGTGT
TCTTATATACTTTGTTGTTATAAAAAAAAAGTGTATTCTTTTTCGCAGGA
CTATTCGCAAATTCTTCGCTACGGCATGACGTCAGAGCTGGGGGGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030163XLOC_030163Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047353-exon-scaffold_126-1575043694:145790..145908TCONS_00047353-exon-scaffold_126-1575043694:145790..145908Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1575043694:145359..145410TCONS_00047353-exon-scaffold_126-1575043694:145359..145410Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1575043694:144671..144817TCONS_00047353-exon-scaffold_126-1575043694:144671..144817Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1575043694:144298..144399TCONS_00047353-exon-scaffold_126-1575043694:144298..144399Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1575043694:143718..143901TCONS_00047353-exon-scaffold_126-1575043694:143718..143901Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1575043694:142460..142977TCONS_00047353-exon-scaffold_126-1575043694:142460..142977Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1510915933:145790..145908TCONS_00047353-exon-scaffold_126-1510915933:145790..145908Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1510915933:145359..145410TCONS_00047353-exon-scaffold_126-1510915933:145359..145410Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1510915933:144671..144817TCONS_00047353-exon-scaffold_126-1510915933:144671..144817Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1510915933:144298..144399TCONS_00047353-exon-scaffold_126-1510915933:144298..144399Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1510915933:143718..143901TCONS_00047353-exon-scaffold_126-1510915933:143718..143901Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1510915933:142460..142977TCONS_00047353-exon-scaffold_126-1510915933:142460..142977Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1491911889:145790..145908TCONS_00047353-exon-scaffold_126-1491911889:145790..145908Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1491911889:145359..145410TCONS_00047353-exon-scaffold_126-1491911889:145359..145410Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1491911889:144671..144817TCONS_00047353-exon-scaffold_126-1491911889:144671..144817Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1491911889:144298..144399TCONS_00047353-exon-scaffold_126-1491911889:144298..144399Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1491911889:143718..143901TCONS_00047353-exon-scaffold_126-1491911889:143718..143901Clytia hemisphaericaexon
TCONS_00047353-exon-scaffold_126-1491911889:142460..142977TCONS_00047353-exon-scaffold_126-1491911889:142460..142977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_126supercontigscaffold_126:142460..145908 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0194231	0	0.236952	0	0	0	0	0	0	0	0	0	8.79723	20.8308	536.348	614.344	87.9738	81.6827	382.483	339.407	44.7479	40.6116	697.46	551.454	305.156	354.348	24.2528	32.1314	2274.6	2919.23
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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