TCONS_00047352 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047352
Unique NameTCONS_00047352
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047352 ID=TCONS_00047352|Name=TCONS_00047352|organism=Clytia hemisphaerica|type=transcript|length=863bp
CCAAGTTAATGGTCTATTTACACGACACGATAGATGTGTATAAATAGCCA
GGATAATTCTTACATTTCCATCGTTCAAGTTTATTTGGATTTATCAATCA
CCATTTGAAAAGACTTCAGGACAAATATGAGAACTTTCGCGATTCTTCTT
GCCGTGATACTCACAGCCTCGGCAAACCATTTCAATTTGGAATTCGAACA
AGACGgttcaaaatatattgaaaaagttgatataTTCAAGAAAACTGGAG
TCATTGTGTATGATGTACCACGACATAGTAACACTTCGGCTATGACGCTC
TTAAAAGATTACAATCTGAGATTGAATGTGATGAAAGATGTTGTTCAAAA
AAGATGTTATGTCTACCCGATGGAGAAAAATGAACCAACTCTGGATTCCG
TTGAGAAAGGATTTGAAATGGTAAAAGGAAAATTCCCTAGCAACAAGTTC
TTGGTAAATCAATTGAACATGTTTGCACAGGACGAAGTGGATACATCAAC
CCTGTCCAAAGCAGTGATCACTTTCTGTCAAAACTATAAAATTCTCAATG
TTGAATTTTATTCCGAACAACAAGCAGAAAAACTCATGCAACAAAAAATC
AAACAACATTTCTCCACACGTTCAAAACGAAGAGATGTACACGTCGGTTC
TTTCATGGCTTGCCAAGACGGATCAACAATGACAGAGCAATTGAATGATC
TGGTCAGATGTTGGAACGCAAAAAGAGTTGACATGATCAAAACTCGATGT
GACATCAAATACTGGAAGATCTGTGGCAACAATGTTCATTTCGAGACATT
GACATGCAAAGCAGCCGATACCTCATCACATGTTGCAGGACGGAGATGGA
AATTGTCTTGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_126:140283..145908-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047352 ID=TCONS_00047352|Name=TCONS_00047352|organism=Clytia hemisphaerica|type=transcript|length=5626bp|location=Sequence derived from alignment at scaffold_126:140283..145908- (Clytia hemisphaerica)
CCAAGTTAATGGTCTATTTACACGACACGATAGATGTGTATAAATAGCCA
GGATAATTCTTACATTTCCATCGTTCAAGTTTATTTGGATTTATCAATCA
CCATTTGAAAAGACTTCAGGTAATTATTAATTTTATGCCATAAAGCTTAT
ATTTCCTAGACTATAATGGTTCTAGATCAAGCTGAATTTATGCAAAATCT
TCAATAATGTTTACATAGGCAATATTTTTCACACATCAAGCGGAATATAT
ATACTACACGTCCTCCGGGACGTGCTAAGAACAATCTAGGCCTTCTGATG
AAAACCTCCTCAGAAAAATCTTGAAAATTGCTACTTAATAGTAAAATTTA
GAACATATATAAGAACATTTTATACCTAGTTTTTAGAAAGAAATTTTGAA
ATGAATAAAAACGATTACAAACATATTTTTTTTAAATGATATTATTCAAG
TTTTAGATTTTTATGCAATATTTTAATATTTTTATTTTTTTGTTGCAGGA
CAAATATGAGAACTTTCGCGATTCTTCTTGCCGTGATACTCACAGCCTCG
GTAAGTTGTTGCAATTTTCACCAGTTGCTTTTAAAAACGCATTTCCATTT
GTACTGTGAGCAAGTGGGACATTTTGAAGAGGAGTAAAACTCTTTTTCCT
GCTTGCTAACGCTAACGGGATATATGCGGTAATGCTAGGACGCCCAAAAG
CGTGGCAAGTTATATCTCAGTCGATAACTTACACTCGAAAGGCTGTAGGT
AGGTCACGATCATCGTTCCACTTAACGAATAATTAGCAAAATACATGTAA
ATCAAATTGCAGTTAAAGTCATTGAGTAAATGGAATGTGGCTAGATGTGG
TGCTCCACCCCACGCGAAATCAACCCAGAAAGCTAGAGCTAACACAAATG
GATTATTTCCCCCGCTGTACGGTTGCTAATGACCCTAGTCCTCTCCGGGC
CGAGTCCTCAAATGATTATGTTTTTTTTACTCTGAAACCTCGTTTTTCTG
GTGTAGGCTTGTGTTTGTGTTTGCGTTTCTTAGGAATCTTGTTTGTCGTA
AAACAAAATGTTGTCAGTATTTTCTCGTGTTTATATTTTAGGCAAACCAT
TTCAATTTGGAATTCGAACAAGACGGTTCAAAATATATTGAAAAAGTTGA
TATATTCAAGAAAACTGGAGTCATTGTGTATGATGTACCACGACATAGTA
ACACTTCGGCTATGACGCTCTTAAAAGATTACAATCTGGTAAAATATAAA
GTTAAACTAAACTCCTTTTGAAACTTTATCTAATGGTAATGGTCTCTCCA
TAATTTCCAAATTTCCAGAAATCTGCGATGGAGTGCTATTTTGCTTGGCT
CGGGATTGTGCGTCGAGCACTTCCCCGTATTTTATCTTGTTACGGAAAAT
AAACCTATTTTTTCAAATTTTCTATTCATGATATCCATGACGTAATCTTT
TTTACGGAAACCGTCTAAAGTTGTATTTTGTATTTCTATATGTTTTCCTA
ATTTTTTAGAGATTGAATGTGATGAAAGATGTTGTTCAAAAAAGATGTTA
TGTCTACCCGATGGAGAAAAATGAACCAACTCTGGATTCCGTTGAGAAAG
GATTTGAAATGGTAAGCTACTTTTACATCGGTTGTATTGGTCCGAGCAAA
TTCATCAGCTGTCTTTGATATTCTTCGATATTTGATCTAAATCACTCCAG
AGTAAACAACATACCGGAAAAAGTTGTTTCTATTAACCCAGTGCAGTGAA
AAAATGTTATTGTTACCAAGGAAGATTGGGATTAAAATATAACAAATCTA
AAAATGCAATAGATTTGAAGAACCAAACTGAAAGTAAAGTAAAAAGTAAG
CCTTTTTGGACCGAGTTGACCGTATATATTTTTTCGAATGTAATTTAACC
CCGATTAACTTTGTCTCGCATTATGGCATTGCATAGGGTGTTGTTTTTAG
CTTACATCGATTTTTCCTGCATACGTCATCTGAAAATAAGTCTTCCATTT
TTTATAGGTAAAAGGAAAATTCCCTAGCAACAAGTTCTTGGTAAATCAAT
TGAACATGTTTGCACAGGACGAAGTGGATACATCAACCCTGTCCAAAGCA
GTGATCACTTTCTGTCAAAACTATAAAATTCTCAATGTTGAATTTTATTC
CGAACAACAAGCAGAAAAACTCATGCAACAAAAAATCAAACGTATGTAAA
TAATATAGTACCTCATCGGTAGAAAATTCGTCGGTTAAAAAATTCGTCGG
CAAAAAAAATTCGTCGGCAAAAAACTTCGTCACTTGCCAATAATTTCGTC
ACTTCTTGCCAACTTTTTTTGCTAAAATACCTTATCGGTAGAATATTTGT
CGGCAAAAATATTCGTCGGCAAAAAAAATTCGTCGGTAAAAAATTTCGTC
ACCAAGCGATTTTTTCGTCACTTTTTACCGACGAGTTTTCTACCGTTAAG
GTACTCTTTTAAATTTCTTTTTTTTTATAAAAGTGTAAGTGNCGTCACTT
TTTACCGACGAATTTTCTACCGATAAGGTACTCTTTTAAATCTCTTTTTT
TTATAAAAGTGTAAGTGAATTTCGGGCAAGATGAGCAGAAGACCTCACTA
GCTCGATTGTTACTTTGACCACTTTGACTTGGGGTGACATTTCCCAGTAA
AACCCTTACTTATTTACAGTAAGGAATATTGTATTTGTAGAGATAAAGTT
TATTTACTTAAAATCTGTACAGGACAAGCTTAGATCACACTATAATGGAT
TTTTTTCATCCAAGCTTTCTATGAATTGTTCTTAAAATTCTCATCGAAAA
TGGTCATTTATAGCTGTTTTATGCAAGTTTTTTCTTTTAAATAGTATTTT
CTTCTTATATAAAGTCCATTATTGTCCTTTAAAACTGTTCTTAATTCTCA
TAAAAACGCGTGTATCTATCTCTATCTTCAGAACATTTCTCCACACGTTC
AAAACGAAGAGATGTACACGTCGGTTCTTTCATGGCTTGCCAAGACGGAT
CAACAATGACAGAGCAATTGAATGATCTGGTCAGATGTTGGAACGCAAAA
AGAGTTGACATGATCAAAACTCGATGTGACATCAAATACTGGAAGATCTG
TGGCAACAATGTTCATTTCGAGACATTGACATGCAAAGCAGCCGGTAACG
AACGTCACGCTTGTGTCATTCCTGAACACACACGAGCTAATGTTATTTGC
TGTAGAAATAAATGTATGTTGTAAATTGGCAATAAATATGCTTTGGTTTC
TCAAGATTGCAAAGAGTTAGAACCTCAATGATTTTGATTCTCCAAAGCTT
CCAAATGTTCGTAATCCTGTTCTTAATTTTTTGACCTCGAAGCCTTGTGT
TCTTATATACTTTGTTGTTATAAAAAAAAAGTGTATTCTTTTTCGCAGGA
CTATTCGCAAATTCTTCGCTACGGCATGACGTCAGAGCTGGGGGGGGGGG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGCAGAACACTTACTAAAGAT
TAATTATGAATTTTCAGTAAACAAAATCTTTTAGTGAGTTAGAAGTGATT
TAATTTTATTGGTTGGAAAGTACATCACCGTGAACCATGACTTTCCATGG
GGAAGAAATATTTCGTGGGCATAAGATCTTTCAGAACTATGGTACTATTA
TAATCAGTTTGTCCAATTGTAAAAACCACATGCAACACTGGAAAATATTT
GATACTCCAAAAAAGAATTCCAAACAAAATTTTCACTCCATGGAAAATTC
AGCTAAAAACAATGGGTTTCAGTGGTTGTAATTGTGTTCGATAACAGAGG
AATTACTGGGCAGTTAGCTTGGAAGCCCCTCCCTTAAAAAAAGAACAACA
TAACAACATTCCTTTGTAAAGAACTTCCAACTCCAAGTCAGAAAACAAAA
TAAACTCCTTCCCTAAATCCTAGGGGGTGCACACTATGACGGGGGTTATT
TTGTACGCTATATTCTTGTAGTCTTCCTTACTTTAATATATTTTCTTACA
ATTTTAGTCGTATTGACTTCTTATGAACTAACCTTGTTTTTTTCTTGTTT
TCTCCTGATGGCAAAGTTTTCACTGATCTAAATAAGTCTTCCTCCACACT
GAAATCTGCGATCGGTACCTGGAAATTGTTGCTTGCTATAAATAAAAAGG
GAAATAAAAGGCACCTCAAAATTTTATATAAGAAGATTTGGTATTTCGTG
AAATCATGCGAGAAGTTTTCTTCAAAGAAGGAGGTCTCGAGATAGCATGA
AAAAGACGCGCGTTCGATAATTTCGAGGTTACGCAAAATGATATTTAGGC
CCTTAAACGGTATAATGTGGTCCTGTACATAAATTTTCATTTACAAGTTT
TGTTTATACGAATTATGTACAGGCCGACCTATACGCGTCTAAGGTCCCAC
GTATCCTCTTGCGTTACCTCGCTAATAGGCTAACCGGCAAGATGTTTGTT
CTGCTTTACGACAAAATGGCTTTTTTTCTAAAATCGGAGCTTTCTCTTTA
TTTCTTCGTTTTGGGGTTTCGCATTATAGTTCGCATAGTGAAATCGGCAG
AGAGTACATCTCATCGTCACTTTATAAGAACAACAAATTTATTTATTTTT
CTTTATGACCATAGCAACGAGTAAAAATCAAATTTGAAAACATTATTCAA
GGTTCTTGTCGGCCAAATCAGGGATTGCTAAATCAGCAATATTCACAGTA
GTGCGCATGCGCATGAATCAGCACTACAAGCTGGCGTGCGAAGACTGTTT
TGTTATTGTATGAATTACCATTGCCAAAAGTCCCAGATACGCGTGTTTTT
TTATAAGAAATAGCTTGATCATTTGCTGAAATATAATGGTCAATGAGCGG
GGGAGGGGGGTGAAATAAGAGGGGGGGGTAATTCGAAGACAGAGTTTTTT
TTAACTGATATCAATGTCAACAACAAAAAAAGAAACTTTAACAAATGAAC
ACGTAAAATAAGAACCAATACTAACAAACAGGAAAATTTTAACAAGGTTA
AGGTCTATCTACACTGTAATAAAATTTTAAATTATTCGAATTTAANNNNN
NNNNNNNNNAAAGAAACTTTAACAAATAAACACGTAAAATAAGAACCAAT
ACTAACAAAAAGAAAATTTTTAACAAGTTTAAGGTCTATCTACACTGTAA
TAAAATTTTAAATTATTCGAATTTAATTAGCGGGGGGGGGGGTCTTAATA
AGAGCGGGGGATGGATTTTTTTTCATTTAACAATTAGCGGGGGGCGTCTA
TTCGGGAGACAAGAGTATCACTCTCTCGAAGACTTTGGACAATATTGGCA
AAATACTGATGGGTCTGTGATCAATAAGTGATTGCGGATCATTGACTTTT
ATTTCGGGACAGGACATATGCGGCTTATCTTCCAGTCATCTGGGAAGATT
GATGATTCGATACAGCTGTTAATAATGTGGATTAGGGGTCACACGAGATA
TTCTGAAACTGGTTTGATAAATGACAGTATATTGTCGTGACCGGTCGAAC
AGTCTGATCTTAATTTCAACATTGCTTTAGATACCTCATCACATGTTGCA
GGACGGAGATGGAAATTGTCTTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030163XLOC_030163Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047352-exon-scaffold_126-1575043694:145790..145908TCONS_00047352-exon-scaffold_126-1575043694:145790..145908Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1575043694:145359..145410TCONS_00047352-exon-scaffold_126-1575043694:145359..145410Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1575043694:144671..144817TCONS_00047352-exon-scaffold_126-1575043694:144671..144817Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1575043694:144298..144399TCONS_00047352-exon-scaffold_126-1575043694:144298..144399Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1575043694:143718..143901TCONS_00047352-exon-scaffold_126-1575043694:143718..143901Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1575043694:142765..142977TCONS_00047352-exon-scaffold_126-1575043694:142765..142977Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1575043694:140283..140328TCONS_00047352-exon-scaffold_126-1575043694:140283..140328Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1510915933:145790..145908TCONS_00047352-exon-scaffold_126-1510915933:145790..145908Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1510915933:145359..145410TCONS_00047352-exon-scaffold_126-1510915933:145359..145410Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1510915933:144671..144817TCONS_00047352-exon-scaffold_126-1510915933:144671..144817Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1510915933:144298..144399TCONS_00047352-exon-scaffold_126-1510915933:144298..144399Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1510915933:143718..143901TCONS_00047352-exon-scaffold_126-1510915933:143718..143901Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1510915933:142765..142977TCONS_00047352-exon-scaffold_126-1510915933:142765..142977Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1510915933:140283..140328TCONS_00047352-exon-scaffold_126-1510915933:140283..140328Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1491911889:145790..145908TCONS_00047352-exon-scaffold_126-1491911889:145790..145908Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1491911889:145359..145410TCONS_00047352-exon-scaffold_126-1491911889:145359..145410Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1491911889:144671..144817TCONS_00047352-exon-scaffold_126-1491911889:144671..144817Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1491911889:144298..144399TCONS_00047352-exon-scaffold_126-1491911889:144298..144399Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1491911889:143718..143901TCONS_00047352-exon-scaffold_126-1491911889:143718..143901Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1491911889:142765..142977TCONS_00047352-exon-scaffold_126-1491911889:142765..142977Clytia hemisphaericaexon
TCONS_00047352-exon-scaffold_126-1491911889:140283..140328TCONS_00047352-exon-scaffold_126-1491911889:140283..140328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_126supercontigscaffold_126:140283..145908 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.551214	0.581514	0	0	0	0	0	0.130586	0	0	0.274799	0.38584	0.038117	0	3.78214	3.47412	0	0	3.66537	6.20683	2.32433e-06	0.00607663	7.72568	3.60566	21.6855	9.59977	3.08406	1.28766e-07	72.4075	33.6866
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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