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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047335 ID=TCONS_00047335|Name=TCONS_00047335|organism=Clytia hemisphaerica|type=transcript|length=1003bp
GCCTTTATTGAAGATTTCATAGTATACCAAAATCGAGTAAGTTATTCAAC
ATCTCTGCCATGTTAAGATATAATATTAATATTGCAATATTTCAAATTCG
TATACACTGTACATAATACTTCAAATAGAAAATAAATGTAAAACTGATAG
ATCTGAGTACTTAACGTcgttgaaaatcgaaaaaagtactttttctcAAT
TTCAGGCCACCGTAGAACATTGTCAGTACCTACACTGTCTACACGTTTAC
TACGCTTTCCCAATTTGTAACCTTCCCAAATTTGATCGAAACaaactttt
ggtcaaaataACGAACATGAGATCTGAATCAAAACAATCTTTGATAGCCC
TTCTCCCAGGCTTCTTCTTTTCGTGTGACGTCAATTACAATCAAACAAAA
GATGGTAGCAAAGAAGTGAATAGGCGGAACTATAACAACAAGCGGGTACC
ACCATAACGCCACTGCTGCCGCCGCAAAAGTTACCGGTTGGGCTACCAAA
GataatagaaatctcttaggccAGTTTCTTCCAACAACTTTATGTTCAAG
TTCGACTCCAATCCAATCAAAGATGTGAGGTGAAAACAAAGCACCCCAGA
TGCTAGCTACTGCGCCCAGAGCGTAAACAACGCAAAGAGTAATCTCGAAA
TCTTTTTCCAATACGAACATGCTTTTAATGAAATTGttcgtttaaaactc
aattATCTCAATAATGTTATATCGATCAATCTGGTAGTACTTCACACTTT
TTCGAGTATATCTTTACACAAGGCTGTAGTTTGTAAAATTCTCTGtattt
tcgtttttgattttcttttttcttccaaaTCCAAGCTACTAAAACACCTT
TGCTTTCGAACTGAGAAAATATCCTTCATCCAGTTAACGTTCTCTAACGA
ACGACTTCTCATTGGATACATTCAATCACGTGGTACATCTACCATAGTGT
AGTGTGCGTACAGCTGACGACTGATCGGCAAACCAATTTTCCTGACATAA
AAT Run BLAST on NCBI transcript from alignment at scaffold_126:232396..234039+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047335 ID=TCONS_00047335|Name=TCONS_00047335|organism=Clytia hemisphaerica|type=transcript|length=1644bp|location=Sequence derived from alignment at scaffold_126:232396..234039+ (Clytia hemisphaerica)
GCCTTTATTGAAGATTTCATAGTATACCAAAATCGAGTAAGTTATTCAAC
ATCTCTGCCATGTTAAGATATAATATTAATATTGCAATATTTCAAATTCG
TATACACTGTACATAATACTTCAAATAGAAAATAAATGTAAAACTGATAG
ATCTGAGTACTTAACGTcgttgaaaatcgaaaaaagtactttttctcAAT
TTCAGGCCACCGTAGAACATTGTCAGTACCTACACTGTCTACACGTTTAC
TACGCTTTCCCAATTTGTAACCTTCCCAAATTTGATCGAAACaaactttt
ggtcaaaataACGAACATGAGATCTGAATCAAAACAATCTTTGATAGCCC
TTCTCCCAGGCTTCTTCTTTTCGTGTGACGTCAATTACAATCAAACAAAA
GATGGTAGCAAAGAAGTGAATAGGCGGAACTATAACAACAAGCGGGTACC
ACCATAACGCCACTGCTGCCGCCGCAAAAGTTACCGGTTGGGCTACCAAA
GataatagaaatctcttaggccAGTTTCTTCCAACAACTTTATGTTCAAG
TTCGACTCCAATCCAATCAAAGATGTGAGGTGAAAACAAAGCACCCCAGA
TGCTAGCTACTGCGCCCAGAGCGTAAACAACGCAAAGAGTAATCTCGAAA
TCTTTTTCCAATACGAACATGCTTTTAATGAAATTGttcgtttaaaactc
aattATCTCAATAATGTTATATCGATCAATCTGGTAGTACTTCACACTTT
TTCGAGTATATCTTTACACAAGGCTGTAGTTTGTAAAATTCTCTGtattt
tcgtttttgattttcttttttcttccaaaTCCAAGCTACTAAAACACCTT
TGCTTTCGAACTGAGAAAATATCCTTCATCCAGTTAACGTTCTATGAAAA
AATGAATcgagaaaaaattataatattttataaAGTATTAGTGAAGAAAA
AGCATTGAATAACACAGTAGTGTGAATATTTAATTCTCTCTATTCGTTCT
TAAGAGAGCGATTCTACGATTTTGGAGTGTTGAAAAATCTATTTGAATTA
TTCATTAAAACATTCTTTGTCATTTTCAATGAAGATTGAGGTTCTTCCAG
AACAGTTTTTCATTCCAGTAACCTAAACTCTTTTTGTATGCAATGGGTTA
AACTGTAATGCAAATTCTGTTTCTCAGAATTCAATACACCGCCTACTCAG
ACAAACTTGGACCCCTTCCCCCCTataaaattggtgaaaatatcGTCCTC
AGTGGAAAATCATACTCAAATTTTTGTCTCCCGCCGCAAATAATCACTGT
AAAATAaggaaatattgaaatttttccaTCCCCGTTGAATTcaccaaaac
aatggaattcgaaTCACCAGCTATAAAAAcatgagaatatcaatccccat
cgagttttggtcctttatttttacccccacagGCTGATAAATCTTACCGA
AtctttgagaagggggtgtttcaaTATCTAGGACACAAGTCTTCTTCTCA
CGTATATTTCCCTTCGTTATAATGAAATGGTTACCTAACGAACGACTTCT
CATTGGATACATTCAATCACGTGGTACATCTACCATAGTGTAGTGTGCGT
ACAGCTGACGACTGATCGGCAAACCAATTTTCCTGACATAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047335-exon-scaffold_126-1491911889:232396..233288 | TCONS_00047335-exon-scaffold_126-1491911889:232396..233288 | Clytia hemisphaerica | exon |
| TCONS_00047335-exon-scaffold_126-1510915933:232396..233288 | TCONS_00047335-exon-scaffold_126-1510915933:232396..233288 | Clytia hemisphaerica | exon |
| TCONS_00047335-exon-scaffold_126-1575043694:232396..233288 | TCONS_00047335-exon-scaffold_126-1575043694:232396..233288 | Clytia hemisphaerica | exon |
| TCONS_00047335-exon-scaffold_126-1491911889:233930..234039 | TCONS_00047335-exon-scaffold_126-1491911889:233930..234039 | Clytia hemisphaerica | exon |
| TCONS_00047335-exon-scaffold_126-1510915933:233930..234039 | TCONS_00047335-exon-scaffold_126-1510915933:233930..234039 | Clytia hemisphaerica | exon |
| TCONS_00047335-exon-scaffold_126-1575043694:233930..234039 | TCONS_00047335-exon-scaffold_126-1575043694:233930..234039 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_126 | supercontig | scaffold_126:232396..234039 + |
Blast
The following BLAST results are available for this feature:
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