TCONS_00047322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047322
Unique NameTCONS_00047322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047322 ID=TCONS_00047322|Name=TCONS_00047322|organism=Clytia hemisphaerica|type=transcript|length=371bp
GTTGTTTTGAGGGGCGTCGTAATCTATTTAGACTACCTTTGCCCATTGTG
GATTTTGTTTAAACATCTTAGTTCCTGCATTCAGCTTACTGAGGGTTAAG
GGATTTATGCCTAAAAAGAAGAGTTTATgcctaaaaaaagaagaattagt
AAAGCACAAGGTGCTAAGCATGTATAAAAAAGATTATATGCAAAAGTATT
AAAGAGGTATATAACAATTGAATGTTTTATAATAAAAGCGGATTTCGGAA
GGTCGTGAAGAGAGCTtggatataaaaataaataatttaaaatagaGATT
ATTGGCTATTATAAAAAGATAACATAGGGGTTAAAAAGAATATGGTTTGT
ATtactaaaacgtaatatgtG
Run BLAST on NCBI

transcript from alignment at scaffold_125:45597..45967

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047322 ID=TCONS_00047322|Name=TCONS_00047322|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at scaffold_125:45597..45967 (Clytia hemisphaerica)
CacatattacgttttagtaATACAAACCATATTCTTTTTAACCCCTATGT
TATCTTTTTATAATAGCCAATAATCtctattttaaattatttatttttat
atccaAGCTCTCTTCACGACCTTCCGAAATCCGCTTTTATTATAAAACAT
TCAATTGTTATATACCTCTTTAATACTTTTGCATATAATCTTTTTTATAC
ATGCTTAGCACCTTGTGCTTTactaattcttctttttttaggcATAAACT
CTTCTTTTTAGGCATAAATCCCTTAACCCTCAGTAAGCTGAATGCAGGAA
CTAAGATGTTTAAACAAAATCCACAATGGGCAAAGGTAGTCTAAATAGAT
TACGACGCCCCTCAAAACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030145XLOC_030145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047322-exon-scaffold_125-1491911889:45597..45967TCONS_00047322-exon-scaffold_125-1491911889:45597..45967Clytia hemisphaericaexon
TCONS_00047322-exon-scaffold_125-1510915933:45597..45967TCONS_00047322-exon-scaffold_125-1510915933:45597..45967Clytia hemisphaericaexon
TCONS_00047322-exon-scaffold_125-1575043694:45597..45967TCONS_00047322-exon-scaffold_125-1575043694:45597..45967Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_125supercontigscaffold_125:45597..45967 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.413306	0.583657	0	2.31564	1.17177	0	1.76864	0	0.752482	0.221875	0.820746	0	0	0	0	0	0.227754	0	0.358385	0	1.07943	0	0	0	1.23007	0	0.349277	0.264621	0.284353
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top