TCONS_00047321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047321
Unique NameTCONS_00047321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047321 ID=TCONS_00047321|Name=TCONS_00047321|organism=Clytia hemisphaerica|type=transcript|length=262bp
TATAAAGAGGGTTTAGTACTCCCACCACCGAATCACCCTAATGGAAAGCA
ACCCTACCATTCCAAATCATTTGAAGATGTCATCACAGAAATGAGAAAGA
TCACGAACGATGGAGTGCTAGTGATATCTGATACTGCATACGAGAATGAT
GATCTTCAAACATTGAACAAGATGAAATTGAAATGGAAAAGGTATGGAGA
ACGTGAAAACGATTTCAATGAAGGTGAAAGTCCATATCAACATCTCGTAG
ATGGAAACATTT
Run BLAST on NCBI

transcript from alignment at scaffold_125:41860..42121

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047321 ID=TCONS_00047321|Name=TCONS_00047321|organism=Clytia hemisphaerica|type=transcript|length=262bp|location=Sequence derived from alignment at scaffold_125:41860..42121 (Clytia hemisphaerica)
AAATGTTTCCATCTACGAGATGTTGATATGGACTTTCACCTTCATTGAAA
TCGTTTTCACGTTCTCCATACCTTTTCCATTTCAATTTCATCTTGTTCAA
TGTTTGAAGATCATCATTCTCGTATGCAGTATCAGATATCACTAGCACTC
CATCGTTCGTGATCTTTCTCATTTCTGTGATGACATCTTCAAATGATTTG
GAATGGTAGGGTTGCTTTCCATTAGGGTGATTCGGTGGTGGGAGTACTAA
ACCCTCTTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030144XLOC_030144Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047321-exon-scaffold_125-1491911889:41860..42121TCONS_00047321-exon-scaffold_125-1491911889:41860..42121Clytia hemisphaericaexon
TCONS_00047321-exon-scaffold_125-1510915933:41860..42121TCONS_00047321-exon-scaffold_125-1510915933:41860..42121Clytia hemisphaericaexon
TCONS_00047321-exon-scaffold_125-1575043694:41860..42121TCONS_00047321-exon-scaffold_125-1575043694:41860..42121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_125supercontigscaffold_125:41860..42121 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.636988	0.621164	0	0	0	0.678805	1.6379	0.76669	3.70648	4.6542	5.16284	4.24231	4.67967	3.69138	5.63034	4.26979	6.4305	4.90124	3.45612	5.46986	4.92701	3.60484	1.17419	3.17856	0	1.83111	9.21593	7.45725	5.41125	1.44066
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top