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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047315 ID=TCONS_00047315|Name=TCONS_00047315|organism=Clytia hemisphaerica|type=transcript|length=1311bp
TTGTCATTTAAGGGCTCACACCGAACTAAGAGCCTAGCTTATGAGTCGAC
TGCTACAGTAAAGTGGAAAAGGACTCGAcatatagtcaaaatgaaacgtC
AAGGTTTGGTGTTATTAACTGTATTTTGCTTGACGATAATCCTACAATGT
GGAGTCTCAGCTACTGAAGAAGAAACTTCCGAAGATAATCCAGGCACCTA
CCCTAATGGCAAATGGACACGTACTGCTACCGCTAAGGTAGAAGAAGAGA
AAAAGGAGGCAAAAGAAAGTCATGAACCTGGCTCCTACCCAAATGGAAAA
TGGAGTCGTGGAGCCGGTAATGAAGAGGCCGGTAAAATGGTCCATGAGAA
AAAGGAAGCACCTTTCTTTAACATTGGTAGTTTTTCAACTTGGCGAAAAA
GAGCTGTAGCTACTCGGCCATGGTACGGAAGTTATTTCGGTGCAAAACGA
CAACATTTCGACGGATATTGGAACAAGCGAGCAGAGGCTAGACCTTGGCA
AGGCTATTACGGAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGATACT
ACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGCAAAGAGGGAA
GGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGTAGCCG
ACCTTGGCAAGGCTATTATGGAGCAAAGAGGGAAGGCAGCCGACCTTGGC
AAGGATACTATGGAGCGAAAAGAGTAGCTGTCTTACCCTGGTATCAAGCA
AAACGGGAAGGTAGCAGACCTTGGCAAGGGTACTATGGTGCAAAGAGGGA
AGGCAGCCGACCTTGGCAAGGCTATAATGGAGTAAAAAGGGCTATAGATC
TTCCCTGGTATGGTGTTAAAAGAGAGGCAGGAAGACCTTCGCTCGGTGCA
TATAGTTCCAAAAGAGTTGTCGAGTTGCCATGGTACCAAGCAAAGAAGGA
ATCAGGACGTAGTTTTTATGCAGCGAAGAAGGAGGCTTTACCGTGGTATG
AAAAGTTCAGTAAACGTTCGAATACTGAGGAAAACGTTCCTTTTTTCGTA
CGAGATTCTGTTTAGTGTGTGAATTATTCCTCGAGGACTTATAAAAATAC
TTGGAAAAATcaatggaaaattttggaaagcttTCCTGGACGTTGATATA
TAgagaaattttatattttcaaacacaGCAATTTCAAAAGCAAACTTGAA
TATTTAAACTAGGATATAGTCTTTCCTTAGATACGCTTTTTGTGATGAGA
TTATGTGTGTTTTGTATGATTCTAAAATTTCTACAAAAAGCTTTGTCAAT
CCTAAATCATG Run BLAST on NCBI transcript from alignment at scaffold_125:90449..92386+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047315 ID=TCONS_00047315|Name=TCONS_00047315|organism=Clytia hemisphaerica|type=transcript|length=1938bp|location=Sequence derived from alignment at scaffold_125:90449..92386+ (Clytia hemisphaerica)
TTGTCATTTAAGGGCTCACACCGAACTAAGAGCCTAGCTTATGAGTCGAC
TGCTACAGTAAAGTGGAAAAGGACTCGAcatatagtcaaaatgaaacgtC
AAGGTTTGGTGTTATTAACTGTATTTTGCTTGACGATAATCCTACAATGT
GGAGTCTCAGCTACTGAAGAAGAAACTTCCGAAGATAATCCAGGCACCTA
CCCTAATGGCAAATGGACACGTACTGCTACCGCTAAGGTAGAAGAAGAGA
AAAAGGAGGCAAAAGAAAGTCATGAACCTGGCTCCTACCCAAATGGAAAA
TGGAGTCGTGGAGCCGGTAATGAAGAGGCCGGTAAAATGGTCCATGAGAA
AAAGGAAGCACCTTTCTTTAACATTGGTAGTTTTTCAACTTGGCGAAAAA
GAGCTGTAGCTACTCGGCCATGGTACGGAAGTTATTTCGGTGCAAAACGA
CAACATTTCGACGGATATTGGAACAAGCGAGCAGAGGCTAGACCTTGGCA
AGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGCAA
AGAGAGAAAGCAGCCGACCTTGGCAAGGCTATTATGGAGCAAAGAGGGAA
GGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAACAGATGATCT
TCCTTGGTATCAAGCAAAGAGAGAAAGCAGCCGACCTTGGCAAGGCTATT
ACGGAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGCTACTACGGAGCA
AAGAGGGAAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAAC
AGCTGATCTTCCTTGGTATCAAGCAAAGAGAGAAAGCAGCCGACCTTGGC
AAGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGCA
AAGAGGGAAGGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGA
AGGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGCAGCC
GACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGCAGCCGACCTTGG
CAAGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGC
AAAGAGAGAAAGCAGCCGACCTTGGCAAGGCTACTACGGTGCAAAGAGGG
AAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAACAGCTGAT
CTTCCTTGGTATCAAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGGTA
TTATGGAGCAAAGAGGGAAGGTAGCCGACCTTGGCAAGGCTATTATGGAG
CAAAGAGGGAAGGCAGCCGACCTTGGCAAGGATACTATGGAGCGAAAAGA
GTAGCTGTCTTACCCTGGTATCAAGCAAAACGGGAAGGTAGCAGACCTTG
GCAAGGGTACTATGGTGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGCT
ATAATGGAGTAAAAAGGGCTATAGATCTTCCCTGGTATGGTGTTAAAAGA
GAGGCAGGAAGACCTTCGCTCGGTGCATATAGTTCCAAAAGAGTTGTCGA
GTTGCCATGGTACCAAGCAAAGAAGGAATCAGGACGTAGTTTTTATGCAG
CGAAGAAGGAGGCTTTACCGTGGTATGAAAAGTTCAGTAAACGTTCGAAT
ACTGAGGAAAACGTTCCTTTTTTCGTACGAGATTCTGTTTAGTGTGTGAA
TTATTCCTCGAGGACTTATAAAAATACTTGGAAAAATcaatggaaaattt
tggaaagcttTCCTGGACGTTGATATATAgagaaattttatattttcaaa
cacaGCAATTTCAAAAGCAAACTTGAATATTTAAACTAGGATATAGTCTT
TCCTTAGATACGCTTTTTGTGATGAGATTATGTGTGTTTTGTATGATTCT
AAAATTTCTACAAAAAGCTTTGTCAATCCTAAATCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047315-exon-scaffold_125-1491911889:90449..90950 | TCONS_00047315-exon-scaffold_125-1491911889:90449..90950 | Clytia hemisphaerica | exon |
| TCONS_00047315-exon-scaffold_125-1510915933:90449..90950 | TCONS_00047315-exon-scaffold_125-1510915933:90449..90950 | Clytia hemisphaerica | exon |
| TCONS_00047315-exon-scaffold_125-1575043694:90449..90950 | TCONS_00047315-exon-scaffold_125-1575043694:90449..90950 | Clytia hemisphaerica | exon |
| TCONS_00047315-exon-scaffold_125-1491911889:91143..91166 | TCONS_00047315-exon-scaffold_125-1491911889:91143..91166 | Clytia hemisphaerica | exon |
| TCONS_00047315-exon-scaffold_125-1510915933:91143..91166 | TCONS_00047315-exon-scaffold_125-1510915933:91143..91166 | Clytia hemisphaerica | exon |
| TCONS_00047315-exon-scaffold_125-1575043694:91143..91166 | TCONS_00047315-exon-scaffold_125-1575043694:91143..91166 | Clytia hemisphaerica | exon |
| TCONS_00047315-exon-scaffold_125-1491911889:91602..92386 | TCONS_00047315-exon-scaffold_125-1491911889:91602..92386 | Clytia hemisphaerica | exon |
| TCONS_00047315-exon-scaffold_125-1510915933:91602..92386 | TCONS_00047315-exon-scaffold_125-1510915933:91602..92386 | Clytia hemisphaerica | exon |
| TCONS_00047315-exon-scaffold_125-1575043694:91602..92386 | TCONS_00047315-exon-scaffold_125-1575043694:91602..92386 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_125 | supercontig | scaffold_125:90449..92386 + |
Blast
The following BLAST results are available for this feature:
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