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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047313 ID=TCONS_00047313|Name=TCONS_00047313|organism=Clytia hemisphaerica|type=transcript|length=1311bp
TTGTCATTTAAGGGCTCACACCGAACTAAGAGCCTAGCTTATGAGTCGAC
TGCTACAGTAAAGTGGAAAAGGACTCGAcatatagtcaaaatgaaacgtC
AAGGTTTGGTGTTATTAACTGTATTTTGCTTGACGATAATCCTACAATGT
GGAGTCTCAGCTACTGAAGAAGAAACTTCCGAAGATAATCCAGGCACCTA
CCCTAATGGCAAATGGACACGTACTGCTACCGCTAAGGTAGAAGAAGAGA
AAAAGGAGGCAAAAGAAAGTCATGAACCTGGCTCCTACCCAAATGGAAAA
TGGAGTCGTGGAGCCGGTAATGAAGAGGCCGGTAAAATGGTCCATGAGAA
AAAGGAAGCACCTTTCTTTAACATTGGTAGTTTTTCAACTTGGCGAAAAA
GAGCTGTAGCTACTCGGCCATGGTACGGAAGTTATTTCGGTGCAAAACGA
CAACATTTCGACGGATATTGGAACAAGCGAGCAGAGGCTAGACCTTGGCA
AGGCTATTACGGAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGATACT
ACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGCAAAGAGGGAA
GGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGTAGCCG
ACCTTGGCAAGGCTATTATGGAGCAAAGAGGGAAGGCAGCCGACCTTGGC
AAGGATACTATGGAGCGAAAAGAGTAGCTGTCTTACCCTGGTATCAAGCA
AAACGGGAAGGTAGCAGACCTTGGCAAGGGTACTATGGTGCAAAGAGGGA
AGGCAGCCGACCTTGGCAAGGCTATAATGGAGTAAAAAGGGCTATAGATC
TTCCCTGGTATGGTGTTAAAAGAGAGGCAGGAAGACCTTCGCTCGGTGCA
TATAGTTCCAAAAGAGTTGTCGAGTTGCCATGGTACCAAGCAAAGAAGGA
ATCAGGACGTAGTTTTTATGCAGCGAAGAAGGAGGCTTTACCGTGGTATG
AAAAGTTCAGTAAACGTTCGAATACTGAGGAAAACGTTCCTTTTTTCGTA
CGAGATTCTGTTTAGTGTGTGAATTATTCCTCGAGGACTTATAAAAATAC
TTGGAAAAATcaatggaaaattttggaaagcttTCCTGGACGTTGATATA
TAgagaaattttatattttcaaacacaGCAATTTCAAAAGCAAACTTGAA
TATTTAAACTAGGATATAGTCTTTCCTTAGATACGCTTTTTGTGATGAGA
TTATGTGTGTTTTGTATGATTCTAAAATTTCTACAAAAAGCTTTGTCAAT
CCTAAATCATG Run BLAST on NCBI protein sequence of TCONS_00047313-protein >TCONS_00047313-protein ID=TCONS_00047313-protein|Name=TCONS_00047313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
LSFKGSHRTKSLAYESTATVKWKRTRHIVKMKRQGLVLLTVFCLTIILQC
GVSATEEETSEDNPGTYPNGKWTRTATAKVEEEKKEAKESHEPGSYPNGK
WSRGAGNEEAGKMVHEKKEAPFFNIGSFSTWRKRAVATRPWYGSYFGAKR
QHFDGYWNKRAEARPWQGYYGAKREGSRPWQGYYGAKRTADLPWYQAKRE
GSRPWQGYYGAKREGSRPWQGYYGAKREGSRPWQGYYGAKRVAVLPWYQA
KREGSRPWQGYYGAKREGSRPWQGYNGVKRAIDLPWYGVKREAGRPSLGA
YSSKRVVELPWYQAKKESGRSFYAAKKEALPWYEKFSKRSNTEENVPFFV
RDSV Run BLAST on NCBI transcript from alignment at scaffold_125:90449..92386+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047313 ID=TCONS_00047313|Name=TCONS_00047313|organism=Clytia hemisphaerica|type=transcript|length=1938bp|location=Sequence derived from alignment at scaffold_125:90449..92386+ (Clytia hemisphaerica)
TTGTCATTTAAGGGCTCACACCGAACTAAGAGCCTAGCTTATGAGTCGAC
TGCTACAGTAAAGTGGAAAAGGACTCGAcatatagtcaaaatgaaacgtC
AAGGTTTGGTGTTATTAACTGTATTTTGCTTGACGATAATCCTACAATGT
GGAGTCTCAGCTACTGAAGAAGAAACTTCCGAAGATAATCCAGGCACCTA
CCCTAATGGCAAATGGACACGTACTGCTACCGCTAAGGTAGAAGAAGAGA
AAAAGGAGGCAAAAGAAAGTCATGAACCTGGCTCCTACCCAAATGGAAAA
TGGAGTCGTGGAGCCGGTAATGAAGAGGCCGGTAAAATGGTCCATGAGAA
AAAGGAAGCACCTTTCTTTAACATTGGTAGTTTTTCAACTTGGCGAAAAA
GAGCTGTAGCTACTCGGCCATGGTACGGAAGTTATTTCGGTGCAAAACGA
CAACATTTCGACGGATATTGGAACAAGCGAGCAGAGGCTAGACCTTGGCA
AGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGCAA
AGAGAGAAAGCAGCCGACCTTGGCAAGGCTATTATGGAGCAAAGAGGGAA
GGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAACAGATGATCT
TCCTTGGTATCAAGCAAAGAGAGAAAGCAGCCGACCTTGGCAAGGCTATT
ACGGAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGCTACTACGGAGCA
AAGAGGGAAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAAC
AGCTGATCTTCCTTGGTATCAAGCAAAGAGAGAAAGCAGCCGACCTTGGC
AAGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGCA
AAGAGGGAAGGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGA
AGGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGCAGCC
GACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGCAGCCGACCTTGG
CAAGGCTATTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGC
AAAGAGAGAAAGCAGCCGACCTTGGCAAGGCTACTACGGTGCAAAGAGGG
AAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAACAGCTGAT
CTTCCTTGGTATCAAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGGTA
TTATGGAGCAAAGAGGGAAGGTAGCCGACCTTGGCAAGGCTATTATGGAG
CAAAGAGGGAAGGCAGCCGACCTTGGCAAGGATACTATGGAGCGAAAAGA
GTAGCTGTCTTACCCTGGTATCAAGCAAAACGGGAAGGTAGCAGACCTTG
GCAAGGGTACTATGGTGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGCT
ATAATGGAGTAAAAAGGGCTATAGATCTTCCCTGGTATGGTGTTAAAAGA
GAGGCAGGAAGACCTTCGCTCGGTGCATATAGTTCCAAAAGAGTTGTCGA
GTTGCCATGGTACCAAGCAAAGAAGGAATCAGGACGTAGTTTTTATGCAG
CGAAGAAGGAGGCTTTACCGTGGTATGAAAAGTTCAGTAAACGTTCGAAT
ACTGAGGAAAACGTTCCTTTTTTCGTACGAGATTCTGTTTAGTGTGTGAA
TTATTCCTCGAGGACTTATAAAAATACTTGGAAAAATcaatggaaaattt
tggaaagcttTCCTGGACGTTGATATATAgagaaattttatattttcaaa
cacaGCAATTTCAAAAGCAAACTTGAATATTTAAACTAGGATATAGTCTT
TCCTTAGATACGCTTTTTGTGATGAGATTATGTGTGTTTTGTATGATTCT
AAAATTTCTACAAAAAGCTTTGTCAATCCTAAATCATG Coding sequence (CDS) from alignment at scaffold_125:90449..92386+ >TCONS_00047313 ID=TCONS_00047313|Name=TCONS_00047313|organism=Clytia hemisphaerica|type=CDS|length=4260bp|location=Sequence derived from alignment at scaffold_125:90449..92386+ (Clytia hemisphaerica)
TTGTCATTTAAGGGCTCACACCGAACTAAGAGCCTAGCTTATGAGTCGAC
TGCTACAGTAAAGTGGAAAAGGACTCGAcatatagtcaaaatgaaacgtC
AAGGTTTGGTGTTATTAACTGTATTTTGCTTGACGATAATCCTACAATGT
GGAGTCTCAGCTACTGAAGAAGAAACTTCCGAAGATAATCCAGGCACCTA
CCCTAATGGCAAATGGACACGTACTGCTACCGCTAAGGTAGAAGAAGAGA
AAAAGGAGGCAAAAGAAAGTCATGAACCTGGCTCCTACCCAAATGGAAAA
TGGAGTCGTGGAGCCGGTAATGAAGAGGCCGGTAAAATGGTCCATGAGAA
AAAGGAAGCACCTTTCTTTAACATTGGTAGTTTTTCAACTTGGCGAAAAA
GAGCTGTAGCTACTCGGCCATGGTACGGAAGTTATTTCGGTGCAAAACGA
CAACATTTCGACGGATATTGGAACAAGCGAGCAGAGGCTAGACCTTGGCA
AGGCTATTACGGAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGATACT
ACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGCAAAGAGGGAA
GGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGTAGCCG
ACCTTGGCAAGGCTATTATGGAGCAAAGAGGGAAGGCAGCCGACCTTGGC
AAGGATACTATGGAGCGAAAAGAGTAGCTGTCTTACCCTGGTATCAAGCA
AAACGGGAAGGTAGCAGACCTTGGCAAGGGTACTATGGTGCAAAGAGGGA
AGGCAGCCGACCTTGGCAAGGCTATAATGGAGTAAAAAGGGCTATAGATC
TTCCCTGGTATGGTGTTAAAAGAGAGGCAGGAAGACCTTCGCTCGGTGCA
TATAGTTCCAAAAGAGTTGTCGAGTTGCCATGGTACCAAGCAAAGAAGGA
ATCAGGACGTAGTTTTTATGCAGCGAAGAAGGAGGCTTTACCGTGGTATG
AAAAGTTCAGTAAACGTTCGAATACTGAGGAAAACGTTCCTTTTTTCGTA
CGAGATTCTGTTTAGTTGTCATTTAAGGGCTCACACCGAACTAAGAGCCT
AGCTTATGAGTCGACTGCTACAGTAAAGTGGAAAAGGACTCGAcatatag
tcaaaatgaaacgtCAAGGTTTGGTGTTATTAACTGTATTTTGCTTGACG
ATAATCCTACAATGTGGAGTCTCAGCTACTGAAGAAGAAACTTCCGAAGA
TAATCCAGGCACCTACCCTAATGGCAAATGGACACGTACTGCTACCGCTA
AGGTAGAAGAAGAGAAAAAGGAGGCAAAAGAAAGTCATGAACCTGGCTCC
TACCCAAATGGAAAATGGAGTCGTGGAGCCGGTAATGAAGAGGCCGGTAA
AATGGTCCATGAGAAAAAGGAAGCACCTTTCTTTAACATTGGTAGTTTTT
CAACTTGGCGAAAAAGAGCTGTAGCTACTCGGCCATGGTACGGAAGTTAT
TTCGGTGCAAAACGACAACATTTCGACGGATATTGGAACAAGCGAGCAGA
GGCTAGACCTTGGCAAGGCTATTACGGAGCAAAGAGGGAAGGCAGCCGAC
CTTGGCAAGGATACTACGGAGCAAAAAGAACAGCTGATCTTCCTTGGTAT
CAAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGGTATTATGGAGCAAA
GAGGGAAGGTAGCCGACCTTGGCAAGGCTATTATGGAGCAAAGAGGGAAG
GCAGCCGACCTTGGCAAGGATACTATGGAGCGAAAAGAGTAGCTGTCTTA
CCCTGGTATCAAGCAAAACGGGAAGGTAGCAGACCTTGGCAAGGGTACTA
TGGTGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGCTATAATGGAGTAA
AAAGGGCTATAGATCTTCCCTGGTATGGTGTTAAAAGAGAGGCAGGAAGA
CCTTCGCTCGGTGCATATAGTTCCAAAAGAGTTGTCGAGTTGCCATGGTA
CCAAGCAAAGAAGGAATCAGGACGTAGTTTTTATGCAGCGAAGAAGGAGG
CTTTACCGTGGTATGAAAAGTTCAGTAAACGTTCGAATACTGAGGAAAAC
GTTCCTTTTTTCGTACGAGATTCTGTTTAGTTGTCATTTAAGGGCTCACA
CCGAACTAAGAGCCTAGCTTATGAGTCGACTGCTACAGTAAAGTGGAAAA
GGACTCGAcatatagtcaaaatgaaacgtCAAGGTTTGGTGTTATTAACT
GTATTTTGCTTGACGATAATCCTACAATGTGGAGTCTCAGCTACTGAAGA
AGAAACTTCCGAAGATAATCCAGGCACCTACCCTAATGGCAAATGGACAC
GTACTGCTACCGCTAAGGTAGAAGAAGAGAAAAAGGAGGCAAAAGAAAGT
CATGAACCTGGCTCCTACCCAAATGGAAAATGGAGTCGTGGAGCCGGTAA
TGAAGAGGCCGGTAAAATGGTCCATGAGAAAAAGGAAGCACCTTTCTTTA
ACATTGGTAGTTTTTCAACTTGGCGAAAAAGAGCTGTAGCTACTCGGCCA
TGGTACGGAAGTTATTTCGGTGCAAAACGACAACATTTCGACGGATATTG
GAACAAGCGAGCAGAGGCTAGACCTTGGCAAGGCTATTACGGAGCAAAGA
GGGAAGGCAGCCGACCTTGGCAAGGATACTACGGAGCAAAAAGAACAGCT
GATCTTCCTTGGTATCAAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGG
GTATTATGGAGCAAAGAGGGAAGGTAGCCGACCTTGGCAAGGCTATTATG
GAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGATACTATGGAGCGAAA
AGAGTAGCTGTCTTACCCTGGTATCAAGCAAAACGGGAAGGTAGCAGACC
TTGGCAAGGGTACTATGGTGCAAAGAGGGAAGGCAGCCGACCTTGGCAAG
GCTATAATGGAGTAAAAAGGGCTATAGATCTTCCCTGGTATGGTGTTAAA
AGAGAGGCAGGAAGACCTTCGCTCGGTGCATATAGTTCCAAAAGAGTTGT
CGAGTTGCCATGGTACCAAGCAAAGAAGGAATCAGGACGTAGTTTTTATG
CAGCGAAGAAGGAGGCTTTACCGTGGTATGAAAAGTTCAGTAAACGTTCG
AATACTGAGGAAAACGTTCCTTTTTTCGTACGAGATTCTGTTTAGTTGTC
ATTTAAGGGCTCACACCGAACTAAGAGCCTAGCTTATGAGTCGACTGCTA
CAGTAAAGTGGAAAAGGACTCGAcatatagtcaaaatgaaacgtCAAGGT
TTGGTGTTATTAACTGTATTTTGCTTGACGATAATCCTACAATGTGGAGT
CTCAGCTACTGAAGAAGAAACTTCCGAAGATAATCCAGGCACCTACCCTA
ATGGCAAATGGACACGTACTGCTACCGCTAAGGTAGAAGAAGAGAAAAAG
GAGGCAAAAGAAAGTCATGAACCTGGCTCCTACCCAAATGGAAAATGGAG
TCGTGGAGCCGGTAATGAAGAGGCCGGTAAAATGGTCCATGAGAAAAAGG
AAGCACCTTTCTTTAACATTGGTAGTTTTTCAACTTGGCGAAAAAGAGCT
GTAGCTACTCGGCCATGGTACGGAAGTTATTTCGGTGCAAAACGACAACA
TTTCGACGGATATTGGAACAAGCGAGCAGAGGCTAGACCTTGGCAAGGCT
ATTACGGAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGATACTACGGA
GCAAAAAGAACAGCTGATCTTCCTTGGTATCAAGCAAAGAGGGAAGGCAG
CCGACCTTGGCAAGGGTATTATGGAGCAAAGAGGGAAGGTAGCCGACCTT
GGCAAGGCTATTATGGAGCAAAGAGGGAAGGCAGCCGACCTTGGCAAGGA
TACTATGGAGCGAAAAGAGTAGCTGTCTTACCCTGGTATCAAGCAAAACG
GGAAGGTAGCAGACCTTGGCAAGGGTACTATGGTGCAAAGAGGGAAGGCA
GCCGACCTTGGCAAGGCTATAATGGAGTAAAAAGGGCTATAGATCTTCCC
TGGTATGGTGTTAAAAGAGAGGCAGGAAGACCTTCGCTCGGTGCATATAG
TTCCAAAAGAGTTGTCGAGTTGCCATGGTACCAAGCAAAGAAGGAATCAG
GACGTAGTTTTTATGCAGCGAAGAAGGAGGCTTTACCGTGGTATGAAAAG
TTCAGTAAACGTTCGAATACTGAGGAAAACGTTCCTTTTTTCGTACGAGA
TTCTGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047313-exon-scaffold_125-1491911889:90449..90941 | TCONS_00047313-exon-scaffold_125-1491911889:90449..90941 | Clytia hemisphaerica | exon |
| TCONS_00047313-exon-scaffold_125-1510915933:90449..90941 | TCONS_00047313-exon-scaffold_125-1510915933:90449..90941 | Clytia hemisphaerica | exon |
| TCONS_00047313-exon-scaffold_125-1575043694:90449..90941 | TCONS_00047313-exon-scaffold_125-1575043694:90449..90941 | Clytia hemisphaerica | exon |
| TCONS_00047313-exon-scaffold_125-1491911889:91017..91025 | TCONS_00047313-exon-scaffold_125-1491911889:91017..91025 | Clytia hemisphaerica | exon |
| TCONS_00047313-exon-scaffold_125-1510915933:91017..91025 | TCONS_00047313-exon-scaffold_125-1510915933:91017..91025 | Clytia hemisphaerica | exon |
| TCONS_00047313-exon-scaffold_125-1575043694:91017..91025 | TCONS_00047313-exon-scaffold_125-1575043694:91017..91025 | Clytia hemisphaerica | exon |
| TCONS_00047313-exon-scaffold_125-1491911889:91143..91184 | TCONS_00047313-exon-scaffold_125-1491911889:91143..91184 | Clytia hemisphaerica | exon |
| TCONS_00047313-exon-scaffold_125-1510915933:91143..91184 | TCONS_00047313-exon-scaffold_125-1510915933:91143..91184 | Clytia hemisphaerica | exon |
| TCONS_00047313-exon-scaffold_125-1575043694:91143..91184 | TCONS_00047313-exon-scaffold_125-1575043694:91143..91184 | Clytia hemisphaerica | exon |
| TCONS_00047313-exon-scaffold_125-1491911889:91620..92386 | TCONS_00047313-exon-scaffold_125-1491911889:91620..92386 | Clytia hemisphaerica | exon |
| TCONS_00047313-exon-scaffold_125-1510915933:91620..92386 | TCONS_00047313-exon-scaffold_125-1510915933:91620..92386 | Clytia hemisphaerica | exon |
| TCONS_00047313-exon-scaffold_125-1575043694:91620..92386 | TCONS_00047313-exon-scaffold_125-1575043694:91620..92386 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_125 | supercontig | scaffold_125:90449..92386 + |
Blast
The following BLAST results are available for this feature:
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