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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047310 ID=TCONS_00047310|Name=TCONS_00047310|organism=Clytia hemisphaerica|type=transcript|length=623bp
AGAACACAAAGATGACAAAAATGACAGATTTTTCGATATCTTCAATACTG
AATTTGAGTTCAAGTTTTAGTAAAAAGACGGAGACTTATTTTCAAGATGG
CTACAATGTCACCCATCTAAAACGTCAAACTTCATCAACTTCGTCTGTcg
atgatttcaaaaatatttcatccacGGATGAATCAGGCAGTAACACGTCT
CCACCACGCAAAAAGAAATCGCGCACCGTCTTCACACGACAACAGATACA
ACACTTGGAAAACGCTTTTGATCGGAAGAAGTATTTCACCAACAGCGAAC
GACAAAAGTTAGCAACGGATTTAATGTTATCAGAAACACAGGTTAAAATT
TGGTTACAGAATCGTCGAAACAAATGGAAAAAACAACTTCAAACCGACCT
CAATTACAATCATGGAAAATCAAGCTCGACAAACCCTCTCCAATCATCGG
TGTCACCTTACAATTTCACTCCAAAGATCTTATACAGTCCTCCAACTCAA
GCAAGAATCGGTTTAAAACATGATACAAATGAAAGATGCTTACAACCCTT
GCTCACTGACTTAAACTCGACGTCCTTAAGGGCTTCTGAACAACGACTGT
TTGATTACGACTCTAAGAGAGCT Run BLAST on NCBI protein sequence of TCONS_00047310-protein >TCONS_00047310-protein ID=TCONS_00047310-protein|Name=TCONS_00047310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
NTKMTKMTDFSISSILNLSSSFSKKTETYFQDGYNVTHLKRQTSSTSSVD
DFKNISSTDESGSNTSPPRKKKSRTVFTRQQIQHLENAFDRKKYFTNSER
QKLATDLMLSETQVKIWLQNRRNKWKKQLQTDLNYNHGKSSSTNPLQSSV
SPYNFTPKILYSPPTQARIGLKHDTNERCLQPLLTDLNSTSLRASEQRLF
DYDSKRA Run BLAST on NCBI transcript from alignment at scaffold_125:72203..86361+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047310 ID=TCONS_00047310|Name=TCONS_00047310|organism=Clytia hemisphaerica|type=transcript|length=14159bp|location=Sequence derived from alignment at scaffold_125:72203..86361+ (Clytia hemisphaerica)
AGAACACAAAGATGACAAAAATGACAGATTTTTCGATATCTTCAATACTG
AATTTGAGTTCAAGTTTTAGTAAAAAGACGGAGACTTATTTTCAAGATGG
CTACAATGTCACCCATCTAAAACGTAAGTCAATTCTCAAACAACATATTT
TATGAAGAAAttagttttttgtttattcttatttttgctGTGATAAAAGC
TGAAAATCTTTATAtcagaaatcgaaaaaaaattgggacttttttcccaa
aatttaccCAGGCAGCTTATCCCTTGGTAAATTCTCCCCCTTTCCTACCA
GCGGTTTGtttgaatgcgtgaaaataataaaaaaataaaaaaaagtgttt
cattgaaaaaacttgcttgAACATTAGAATCCACTTTTTAATTGCGTGGG
TGCGTGAATCTGTGCTATTTTTTTGTCTGAGTGTGTTAACTGGGGGAGGG
AAAAATAGATCTATGTTAGAAGTGTGTTTTGTGGTATTTGTTTGTTAGTG
CACTTGTGatcttttctaaaaaagaaataaaaagaatccGTGAAATTTCT
CTTCTTCGACCGTTTATGTGCAAATTTcccgattttgaaaagttttctct
ATTTGCGTGAATTcttgaatttcgagaaaaaattgcgtgaatgcgtgaat
gcgtgaaatatttttcaaccaggggtttttcaaattttttttggtcgTGC
GTATTTGAGCTATGGAGATTTCACTGTAAAACTGTTTATAGATCAAGAGA
TCCTAAAATTCCCAACCTAGATCATAGTCATTGTAAAAAAACTCTGGTCt
agcaatgtattgttttagcttttttttaGTGCTAACGTAAGCTCctttgt
tataaataaaagGCAAGTTGCAATTGGCATGGCTTTTTGGTCCCGTTACC
AAATTCTCCCCTTAGAATGGGTCTAATTTCTagtcacatgatcaaaaaat
aTGCAAATCAAGTCGATTTGCAAACGCAAGTTCTAgttgtaaacaaaaga
aagaaacaaaagccttccagacatGGTTTTTTTTACATTGACTATGCCTG
AATGAGCAGATCTCTAAATTCCAAAAGAATGGTTATTTGAATTAAGTTCA
TCTGAGTAGGGAGTAATGACCGATTATCATGGCAAATTACTagtaaaaaa
ttctaaaatgagTGTGTCATTTTCCAAAAATGTCTGCGTGGTTAAAGTAA
AAGGGAAGATAAAAACAATCGATTTGTAAATTTCCTGACCTTTGGTTCTT
GGATTTTTTGCATTAAGTTGATCATGGCTTTTCAAAATCAAAGCTTTCTT
ATATCTGATTGAACACACAATAAATCGTTACAACAGGGGAATGCTTAACC
CCCGggggcaaatggagggtacggtatgtgccgccctaaAGGATACCTTT
TTTGGGTTtccccgctaagggtcggaaaaatcataaaatcaaatttcagt
cccactaagggtcgggaaaataggaaaatttcaactttttacccccgaaa
agatcgaaatttggtcaaaattgtcCCATTAAgggtaaaaaaattcacaa
aattttcctttctactctcctttttagtcccggtaagggtccaaaggtcg
aaagtcgggtggcaccctccgtcagctcgcaaccctagtgcTCCCTCCCG
CGAGTTCTTAAGTGAGTGCATGCAGTTTTGGATTCGTTTTATGACATAAT
TTCATGTCAGACTACGAAGTGTTCTTACAGAGAAACCAATTCAACTTtaa
cttcaattttttctttaacgTAATTATCACTTAATTTCTTGTTAATTGTA
AGGCTTAATTAACGTACTCATTTTCAAGCATTTCCAGGCGAAAAGGCTAA
ACTGATTAATTGATTTAGCACATTAATTAAATACTCTTTCAGAGACACTT
TTACCAAAAGAAACTTTATTTATTGGAATAATCTATCAATAAACGGCGCA
ATCAATCAGTTCACAAAAGAAATTGTCCAAAATTGATTTCAAGGCCCCGA
ACCAGAAAACGCGACATGTgtgtttttcaaataaaatttctaaatgtgGG
GCAAACTTTAGGCTAAGAAAGGTTGGAGATTCTCTAGCTCCTTCGGGGAT
TCAAACTCAAtaggagtttttacaagttctaatttgatttgattggccgC
GTCAACCTGTGATGTAACAATTTTGTTACTATTTAAAAGAACGCGTCATA
TCTGTTACTTTAAAATGAccaacaagaagcccgttgggcgtgaaggccca
gcgaagtaacgtgttgaaaatgagcgtgcaaaacagcaaatgcatgaccc
cgttgacatggatcaaagtgaagacaggaaaaaaaatttcaaaatcaccg
cGGTACTTCTCGAATGGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTGAATATTTCCCCGCTGTAAGgggaaatattagttaa
aaaggcatttctccgatccttggctacttacgccctttttgcgcccttaA
AGGGGGCggcaatccgccaccacattgcgaagtttgtttttgttttcatt
tgtctTAGTTATTCAGACAAAGCCGCACGGATTTACCTTGATGTTACGCG
CATGTTTTTGAGTAATCAAGACACGAAAAATTCAGATCAAAATACAAGAT
GGACGAAAATTCACTCTTGgctttttaaaagttataactcttttctgacg
aacaaaaaacatacaattttcctgaattttcatCTAATTGGCGACCAATA
ATTACATGAAATGTGAGGCTAACACTTCAACTGTAATCATCAGtaatttc
aagagtttttcatcattgattacaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAGAGACAT
TTGCTTGACATGAAGAAAACGCTATATCCCCATAACtttggacattaaat
gattggcaaaatggtattaacattctattaagatgtgaaactggttccag
ttgaagaattgatgagaaaaatgggcagtacgagaaatatttttgcttta
aaatacAAACTCTTATATGGACAATGTCTCTGGAACAAGTTATATGAGAT
TTGTTTACCGAGTGAccccaaaacaaagtctttaattCTTGGTTCTTACA
TTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttatgaa
cagctgttatcaggttaccttCAGCTGAAACAAAATGATAGCTTTTTTCT
GAGAAAGGAAGATAATTTTTTGTGCCTTCCACCACAtaagtttattttaa
tttttttcccttCAAAAGTCACGTGATATTTTTATCTCGATCACCCCGCC
TCAACTGGAAATTCCCCTATGCACCCTAAAAGTAATcgagttttagaaaa
acaataacaaaccgtGTTATGTGGTGGTGGATTGCCCCTTTAATAACGCC
CACGCCTCTCCCGATAGATTTGTGCAGTGAGGCGGAACTCTTGTCTATAG
TGTAAAACCTTTAGTCAGGATTAATCAATGTGCGATTTTTATTGAGGAAA
TTTAACTCACCATGTGGTGCATGTTCTGGACTGTTTTGGTTGTCAACTCG
ACGGAATTGGAAACTTTCTCTCTGGCTATTTTTCAGACAGTCAGACAGCG
TTAAAAGTGACTTTCAGGGATCTTTTTCCtaaggatttttgaaatttttg
gatgcaatattcttttcttttttttttctcctagAAGTGCCATACAGTGT
GCTGGTGATTAAGGAAGCATTGATCACCAACAGTGTGAGTAAACAACAGT
GCTTGATCACTAAAGAGGTACAcggcaaaaatataaaccttNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccttgtctgcttga
gcagattgatttacattctcgacAAATAAAAGAAGTCGATAGAAAAACTA
TTGTCCGATATTTCAGGTTGACATATATTCTTGACAAAGGTCTATAGAAT
AAAGCATCTCTTCTTAAAGAAGTCATtgccaaaaaaatgacaaaacggtC
ACAATGCAATTGTTTGACCTTTGCCTTTATGATTCCAATAAAAACTGCTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcttt
ataagaaccatgaaatttgagttaagcctaagcttgttcttattttttct
attgtctagaaTAATAGACCTATTGTTTCAGTCTAAGCCTGATTGTTCTT
GGCATTCGTtggcagcatgaaaatctcctaaTAAACTCATATAAAAAAAC
CTCCATATATCAAATGTTCCCCTTTTTTGGCTCCATAACTCccaattttg
ttttcctttcctgaacttgaaaaatataagcaatctgattggctaagaga
caacccatatttcttttttgaaaattttgatttttgggcctggggtcgag
ttttcatttttttcaaaatcttaaactgctacaatcagacctttaaataa
taaataattcgaaagttactgaagtacggcgcatttttaaggcttcactt
tttcttgcctgagaaaggttagagatttaactctagcccttcgggcttta
aactcaatgagtccatctgcaagtgtaagggggaaatatttagtcgcatt
tgtgcgaatcttgttcaaatttacacatgagctgcatttcagtttattta
tttctatatcagaagccattatttcctaaaaataaagtcttttcgaaagc
aataaactaaaaataaaagtgatttaaggtagaattttcactcataaaac
ttaatgaaaacttgagcaaagactataagatatggcagaatgttgaaaaa
ggtttataaaagaaaatcattacaaaatatctttggtttgaaagtctctt
gaccactaaagcaaagaaaatgttcaagaaagtattgaaagtatgaatca
acctcctcgcttcgaccgccatcttgttttgttttgaaatttgtttttaa
aggagcgcgaaatcagaaaatatatcttttatatagccagtatccgactt
tagcaaccttttccctctccaaacggcaaaattaaaaagtgtgttactat
ggtttcaagcgccgtttctaccaaaacggacggacagacagcggacggaa
agttgcaaatgaaaggccctatcgctagcgctgggccaacaaGTGTCAAG
TATCTACTAAAACTGGAGCTCATCTCAAGATGTCTTGTGTTTAATAATTA
AATGAGCAAAGATTTCAATCCAATCGGGATTCCAAAAACTAAAGGTTTTT
TAGTCGCTTGAGAATATTAGTTTGAGTGCAGCTTTCCGCCGACTTTCCAA
GAACTAGGGGTAGGAAACGGGTCTTTGAAGCGTGTGAGTGCATAGTTATT
ATAAAAgtactggtctggaaggcttttgtcacTTTTTATTGCTAAAAaat
ggagcttacgtaccaaaatcgatttattttgaaaactttttgatcatgtg
atatagaaatagaccaatcccattTCATACAATATGTTGCAAGTGACAAT
AGATAATTTGGTGACTTTTTACTTATCCCTTATTACTGAGCTTatcgttt
taaagttatttttcgtATGCAAATATCACCCACATACCATTTGCCATTCC
TAAttagtatgcttataaaactgATTTGACTAAATCTCAGTTCCTTCTTT
ATAATATTGGATGTCGTGCTTGATAAATTGAAACCGTTTTATCTGGCGAC
GAGAAGGGAAATTGAGATTCCTTCCTGTAAACATATTCTCTAAACAAAAC
acgttttttaaatttataagaacattaggtTGATGACCAAAATTTAAAGA
ACAAGTTACgaacattttaagtcttttttggGCACCCAAAATCTAAAGCA
CCCGATTACTGCACAAAAaatatggtaaaaataagaacagcttaAGAATA
CGTTTTaaccttaaaactcaaaaagttaagaacattaaggcttcaacatt
tttggatgttcttataaaagaaatgcGTATGGTTGTTATATTTTTATTGC
TAAGGCGTTGAGTGATATTGTTCACTTCTTTTAATATTCCTTTGAGAATG
CCGCCAATAAGAGTTGTTTCCCTTTGTCGGTACATAGTATaggtggagtc
tctttaactcgaacctctataactcgaatgagtccttaactcgaaaaagt
ttccTTCAGTCTCATATAACATGCTTTAGTtgacaatgccttataaacct
tacttcaTATCTCGCAATTTcgttaattcgaacaaatttgtgttccccct
GCGTGTCCGAGTTTTAGAGACTCTGCTTTACATAGCAGGGTAGTTGGTCA
ACCAAAAGTGGTGCCGAAGTTAGCAATTAGTTGCATCTTCCATCACCTCT
ATCTCCCTACAACAAAGAAAGTTTAAATGACAAATCAACCGTTTGAAAAT
GtgcattttataaaagaacgaGACAAATAGATCTTAGAAGCAGATCGTTT
AAGATACATTCGGTACAGTCGAATCAgggtcaatatgaaaattgtatTGA
TAAGCACACatatgtcacagacccggtgaaaAATTTGACCATAAACTTCT
TTTATCCCCGATTTATCCCCATTTGGAAATTCAATGGAAGAGAATTGCAC
TTTAAAACCATTCCTACTTGATTGAGACAGGGGCGTAAGTATTGATTTAA
CCATGAATGAATCTACAGTACTGCATAAATACACCAGCCattaaaaaaca
tgggaatatcaatcccatcgagttttggtctgTTATTTATATCCCTACta
gctgataaaatcccaccgggtttGTGAGGAGTGGGTGTATCAATACAGGT
CAATTGTTCAAAAACCAAAACTATATTCACCTAATTTTTCAGGTCAAACT
TCATCAACTTCGTCTGTcgatgatttcaaaaatatttcatccacGGATGA
ATCAGGCAGTAACACGTCTCCACCACGCAAAAAGAAATCGCGCACCGTCT
TCACACGACAACAGATACAACACTTGGAAAACGCTTTTGATCGGAAGAAG
TATTTCACCAACAGCGAACGACAAAAGTTAGCAACGGATTTAATGTTATC
AGAAACACAGGTACAAACAACATAGattatttaattatttaaaTTTCACA
GGGGGGGGGTACCAAAATCAAAACCTTCCAAAAATGACTTTCCAgtttgc
ccaaattttagtAAAAGATTAAAGCTCGTATCACGAACCCGATGTAACCC
ttttgctcttttacacctAAGATATGACAGTTTTCGactaaaagagagaa
aataataCCCCCAAAATCTTTGTTCTCGCTACGCTCCCGTAATTTTTACa
ttgatatttacttttcataggggatcaaaaatcaaaatcttccaaaaatg
cctccccagtttgcctgatttttagtcgacccaccacgctactgcctAGG
GAGAATTTaaccaaaatttttctttggtgGCAAAATGCTCTCCAATTTCA
GGCCCACTTGGAATATTTTCTTTGACTTCATCCCccaattgttaaaaaaa
ttgcagTCCAAAACCATCCTGACTGGATTTTTggagtttggaacaataga
ttTGTTATACAAGTTTACATTTCACTGTTGGAAAAAACTCCACAACTAAA
AGCTCCAATACAGAGATATTAGACTGTAACTCTTCTTTGTAGATTCTCGA
TAGAAAAGACAAATTTACTGTTAACATGTAAATGCAAAGTTTCCCATAAA
ATCTCGGAAGCCTTAGATTTCGAATCGATCAAGGAAGCCATAATTCTATC
GATAGGTCAATTTCTTTAGTCCCTAAACTCAGATATTTCTGTATTTATAT
CAAGTTTTATGAAACAGGGATGTGGTATAAATTAGTGATATAAAAATTTA
GATACGTCAGATGGTGAAGTTGcgtaaaacacccccttctcacagaccca
cttgaACCCTTTTCCCACCCctggaaaaatttgccaaaatattatCCCCG
GTAGAAAATTATACCCCACCTactgaaaataaacaaataaacgagtcctc
actgcaaaatattatgctattctTTCCATCCCCGCTgaatttctgacttg
aaaacaatgtaGCTCAAATCCAGTCATAAAAAACTAGAATATCAACCCCC
ATCGAGTTAAGTCTGTTATTTTCACTCCCACTGGCCGAAAGAATCTTACC
GGGTTGAGAAGGGGGTCGTTAGGATGACCATAACTTCAGCAAATAGGGTT
CATTATCTGGCTTATCACTGCTTTTATTTACACTTTTAATTTTTACAGTT
TTAAGATGATTAATTCGAAAAAACACTTGTAAAAATTAAGATttagattg
aaagtaaaattttaagCTTTGTTTTGACACGGCAGCTGGTCGTTTTCCTT
TAAGTTGCTATCGTAAATACACCATAAAAAGCCATTAAATCTCTGGAAAT
TAAGGTCATTTACAATCCATTAAAAATATTGCCAACTTTGATGAACGACC
ACTGATTTTGTCTAAATAGGAATTAGAAATTCAGACATGAAATAATTAGT
GCTTTTTGACGTCATTGAATTTTTGGCATTGGTTGCCGAAAATACTTTTA
GAATGACGAAAAAGTGCATTTTGGATACTTAAATTGAGCTCNCGACCGCT
GATTTTGTCTAAATAGGAATTAGAAATTCAGACATGAAATAATTATTGAT
TTTTGACGTCATTGAATTTTTGGCATTGGATGCCGAAATACTTTTAGAAT
GACGAAAAAGTGCATTTTGGATACTTAAATTGAGCTCAAATACGTAAACT
TTTCAGATCCATCCCGGAGACCACAGACATCTATTCTACAAACTAGATAG
GCTAACTGATTCCCGTTTGAAGTGTGGCCAGCTTTGAAGTCGACTAGTCC
TCCATGTTGTTTCTTAGATTTCCGagcgttcgaatttcaaaacatacgAA
TCGCACTGTTAACGACCATGATTGAGAACGAGATGGCGGACTCTAAACTT
ATAAACACGCTTCCTACATAGGAAGGCCGATCCAGTCAAATAGTTAAAGA
TTCATCCCAGAGACCAATAAGCTATTTTCGATTACGTCCATGTTTTCGTT
TGCAGTATATTCTATTAGCAGCTTATTTCCAACGAAAAGAttatagtgtt
ttttttttgtcaataaaattatGGGTTTGGCCTAAAGGGTGTTAATCTCT
TTTCAAGACGATACGAGCATTCCTGATCCTCGTATCCAAAATTTATGAAT
AGGTCTTCTGGGATCTTTAAAGATgttcttttttatgatatagaaaggAA
GCACGCCTCcctgacaaagcagaataaacTTCAAATCTTCTAGCATAAAC
CCCTTCTCGAAAGTtggtctttcttttgtttaatgaTGTGTCAGCAAGTG
GTAGGAGATAAATGAAGTCCTATAAGATATAAGGCTTTTGGAGTTTTTTc
tgcgttggtgcaatgcaacatgatccatcccaccaaccttaaacgctttc
tcgtgtctccaccccatttttctttttagcaatAAAAGTCCCTGCGACAA
CGGAGAAAAATTGATTATTCGATTCAATGTTGGTTGGATAGAGCATGCTG
CATTGCACCAATACTAAACAAaattctcgtgtccccaagcctttaatgTT
GTTAATTGaaagaacaaaaatttaaaattgacttAGAAAAATGCAGCGAT
AAATCAAGTTAAAGGTGACTTAACTTTTCTTAATTAAGgcagtatttaaa
aaataacgatCTAGCTGACGACCTTTAAGGGACTATCAATTAAAaattgt
tcataattttcttctcAATTAAAGGCCTTACAATTAAAGTATGTTGcggt
ttttctgaaaaataatcTCTTTTTCCGCTCCGCCTTATGACTGCTAAGCT
TTAAAAATATTACGAGGCTATTATTGATTTTAACGGCCTAATTTATAATT
TAATATTTCGAAATCGCCTCTAATTGATTGTAAATAATGGGTAGTGAAAT
TTGGCAAGGCTCAATTTACGACGCTATTAATTTTAATTGAAATCACTCCG
AAAGAAAGCCTAACTTTAAAAACTTCAATGTtgaaatacagggtgtccgc
aaaaaattaaaatatcaaaatatgtctttaagtataattttttttctact
ttttcattCGTCTCGATATTATTCTTTTTTTCAGACACCCTGTATTatta
tatttaaaatatttggtcACAAAACTAAAATAGGCAAAAGTGATGTAAGG
GATTTTTTAAATCCATCTCTTCATCTCTAAAAAGTTCTGAATTTAACAAG
ACCAAAGCAGAATAAAATTTCGTTTTAAATCTGAAGTTGAAATGGCTTAT
GTCAGCATTTCACCCGTGATTAATTTCCATTCAaaacacctccttctcac
agccCAAGTAGAttatttttcagccagtgggtgTTAAAGTATAGGATAGG
GGGGTTCATTTGAATTCCGATGGTTTCGAGTCAGAAAATTTCAGTGAGAA
CtgaaaaaataatacaatatTTTGATGTGAGGATTAGCTGATACTATTAT
TTTCAAAGGGGACAGAAATGGAGTATAGGTTTCTATCGGGTATAggtatt
ttggtcaatttttcagtgggaaggggttcATTGGGTCTGTTAGACTGGGG
TGCATTCTCACCTTTCGAAGAAACCGCTTTTTTTTAACTGTTGCCATGGT
TTCAGTAcaccaaaaaattaaatttataatTAGGTTGAAAAATTGAGGTA
AATTCTTGTGGCAAACTTGGTGGTAAATTCTTTTATAATTGAGTACTTAA
ACTGAactccaaaaaaatcatcatctccGAATATATGGGAAATgttataa
aatttgatattttttgctaTGAATAGAATTTAGGTTTGAAAGCCCCCATC
GGGTTTCGTGAATGGGTGAATGAGCAAAAATTAAGTATACACAAACATTT
CTTACTCAAAAGTATTACAAGAACACCCTTGTCTCACAGTCTCGATAGaa
cctcagtggggataaaaaatcCCAATGCGGATAGAATTTCAATTGTTCCA
AGATTAAAAAACGGTTTTCGAGTGAAATTTTTAatcaatgaatttcgaat
gtggatgaaatcaaagtcaatttccctgCAGGGATGAAATTCCAGGGTAA
ATTCCCACCGGAGacgaaatttttgataaattttccagtggggcaaGACT
TTTAAGAATATAGTTAGAAATAAACTTAATAGTATGAATTCAAATTTGAT
CGGGGCTTGgatcgagagattcttctcccgtCATCAGGCTCAAACTATTT
atcatttattttcatttttccttttaGGTTAAAATTTGGTTACAGAATCG
TCGAAACAAATGGAAAAAACAACTTCAAACCGACCTCAATTACAATCATG
GAAAATCAAGCTCGACAAACCCTCTCCAATCATCGGTGTCACCTTACAAT
TTCACTCCAAAGATCTTATACAGTCCTCCAACTCAAGCAAGAATCGGTTT
AAAACATGATACAAATGAAAGATGCTTACAACCCTTGCTCACTGACTTAA
ACTCGACGTCCTTAAGGGCTTCTGAACAACGACTGTTTGATTACGACTCT
AAGAGAGCT Coding sequence (CDS) from alignment at scaffold_125:72203..86361+ >TCONS_00047310 ID=TCONS_00047310|Name=TCONS_00047310|organism=Clytia hemisphaerica|type=CDS|length=1863bp|location=Sequence derived from alignment at scaffold_125:72203..86361+ (Clytia hemisphaerica)
AACACAAAGATGACAAAAATGACAGATTTTTCGATATCTTCAATACTGAA
TTTGAGTTCAAGTTTTAGTAAAAAGACGGAGACTTATTTTCAAGATGGCT
ACAATGTCACCCATCTAAAACGTCAAACTTCATCAACTTCGTCTGTcgat
gatttcaaaaatatttcatccacGGATGAATCAGGCAGTAACACGTCTCC
ACCACGCAAAAAGAAATCGCGCACCGTCTTCACACGACAACAGATACAAC
ACTTGGAAAACGCTTTTGATCGGAAGAAGTATTTCACCAACAGCGAACGA
CAAAAGTTAGCAACGGATTTAATGTTATCAGAAACACAGGTTAAAATTTG
GTTACAGAATCGTCGAAACAAATGGAAAAAACAACTTCAAACCGACCTCA
ATTACAATCATGGAAAATCAAGCTCGACAAACCCTCTCCAATCATCGGTG
TCACCTTACAATTTCACTCCAAAGATCTTATACAGTCCTCCAACTCAAGC
AAGAATCGGTTTAAAACATGATACAAATGAAAGATGCTTACAACCCTTGC
TCACTGACTTAAACTCGACGTCCTTAAGGGCTTCTGAACAACGACTGTTT
GATTACGACTCTAAGAGAGCTAACACAAAGATGACAAAAATGACAGATTT
TTCGATATCTTCAATACTGAATTTGAGTTCAAGTTTTAGTAAAAAGACGG
AGACTTATTTTCAAGATGGCTACAATGTCACCCATCTAAAACGTCAAACT
TCATCAACTTCGTCTGTcgatgatttcaaaaatatttcatccacGGATGA
ATCAGGCAGTAACACGTCTCCACCACGCAAAAAGAAATCGCGCACCGTCT
TCACACGACAACAGATACAACACTTGGAAAACGCTTTTGATCGGAAGAAG
TATTTCACCAACAGCGAACGACAAAAGTTAGCAACGGATTTAATGTTATC
AGAAACACAGGTTAAAATTTGGTTACAGAATCGTCGAAACAAATGGAAAA
AACAACTTCAAACCGACCTCAATTACAATCATGGAAAATCAAGCTCGACA
AACCCTCTCCAATCATCGGTGTCACCTTACAATTTCACTCCAAAGATCTT
ATACAGTCCTCCAACTCAAGCAAGAATCGGTTTAAAACATGATACAAATG
AAAGATGCTTACAACCCTTGCTCACTGACTTAAACTCGACGTCCTTAAGG
GCTTCTGAACAACGACTGTTTGATTACGACTCTAAGAGAGCTAACACAAA
GATGACAAAAATGACAGATTTTTCGATATCTTCAATACTGAATTTGAGTT
CAAGTTTTAGTAAAAAGACGGAGACTTATTTTCAAGATGGCTACAATGTC
ACCCATCTAAAACGTCAAACTTCATCAACTTCGTCTGTcgatgatttcaa
aaatatttcatccacGGATGAATCAGGCAGTAACACGTCTCCACCACGCA
AAAAGAAATCGCGCACCGTCTTCACACGACAACAGATACAACACTTGGAA
AACGCTTTTGATCGGAAGAAGTATTTCACCAACAGCGAACGACAAAAGTT
AGCAACGGATTTAATGTTATCAGAAACACAGGTTAAAATTTGGTTACAGA
ATCGTCGAAACAAATGGAAAAAACAACTTCAAACCGACCTCAATTACAAT
CATGGAAAATCAAGCTCGACAAACCCTCTCCAATCATCGGTGTCACCTTA
CAATTTCACTCCAAAGATCTTATACAGTCCTCCAACTCAAGCAAGAATCG
GTTTAAAACATGATACAAATGAAAGATGCTTACAACCCTTGCTCACTGAC
TTAAACTCGACGTCCTTAAGGGCTTCTGAACAACGACTGTTTGATTACGA
CTCTAAGAGAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047310-exon-scaffold_125-1491911889:72203..72325 | TCONS_00047310-exon-scaffold_125-1491911889:72203..72325 | Clytia hemisphaerica | exon |
| TCONS_00047310-exon-scaffold_125-1510915933:72203..72325 | TCONS_00047310-exon-scaffold_125-1510915933:72203..72325 | Clytia hemisphaerica | exon |
| TCONS_00047310-exon-scaffold_125-1575043694:72203..72325 | TCONS_00047310-exon-scaffold_125-1575043694:72203..72325 | Clytia hemisphaerica | exon |
| TCONS_00047310-exon-scaffold_125-1491911889:81645..81862 | TCONS_00047310-exon-scaffold_125-1491911889:81645..81862 | Clytia hemisphaerica | exon |
| TCONS_00047310-exon-scaffold_125-1510915933:81645..81862 | TCONS_00047310-exon-scaffold_125-1510915933:81645..81862 | Clytia hemisphaerica | exon |
| TCONS_00047310-exon-scaffold_125-1575043694:81645..81862 | TCONS_00047310-exon-scaffold_125-1575043694:81645..81862 | Clytia hemisphaerica | exon |
| TCONS_00047310-exon-scaffold_125-1491911889:86080..86361 | TCONS_00047310-exon-scaffold_125-1491911889:86080..86361 | Clytia hemisphaerica | exon |
| TCONS_00047310-exon-scaffold_125-1510915933:86080..86361 | TCONS_00047310-exon-scaffold_125-1510915933:86080..86361 | Clytia hemisphaerica | exon |
| TCONS_00047310-exon-scaffold_125-1575043694:86080..86361 | TCONS_00047310-exon-scaffold_125-1575043694:86080..86361 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_125 | supercontig | scaffold_125:72203..86361 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
BLAST of TCONS_00047310 vs. Swiss-Prot (Human)
Match: HMX3 (Homeobox protein HMX3 OS=Homo sapiens GN=HMX3 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.064e-22 Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 3
Query: 138 TSSVDDFKNISSTDESGSNTSPPRKKKSRTVFTRQQIQHLENAFDRKKYFTNSERQKLATDLMLSETQVKIWLQNRRNKWKKQLQTDL---NYNHGKS 422
T +D+K + + E RKKK+RTVF+R Q+ LE+ FD K+Y ++SER LA L L+ETQVKIW QNRRNKWK+QL +L N +H +
Sbjct: 206 TPGAEDWKKGAESPEKKPAC---RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAA 300
The following BLAST results are available for this feature:
|
