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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047306 ID=TCONS_00047306|Name=TCONS_00047306|organism=Clytia hemisphaerica|type=transcript|length=1464bp
GTTTCAAACAAGCGTAGAACCAACACGTCAGTCGTAAATGGCTAGAAACA
ACAAGTTCAATAAAAAACAAGGTGGGGAGAACACCTCTAAACTTCCACAG
GACACTTCCCAACTCAGTGAGGACACTTTTAGTACTCAGGATCGAGACAT
TCCAATGAGTCAATCGAGTCAACCCCAGCCAGAGATGGAAGCAGAAGCAT
TTGATGACATTCCATCAAGCCAACGAGAGTTAAAGGCAGAATCAAACTTC
TCAAATGCAGACACAGCTTTCCAAGATTCAAATGCAGGCCCTTCAACACC
TACAAAATCAATGCGAGTGGCGTCAACACCTAGACAATCAACGCCAAGCC
CGTCAACACCAAAGAAACGTGGGTTAGAGGACACATATCATGgttatgtt
ttaaaattaacAAATGTTACGACAGCTGGGTCACCGTCTAAATCGAAATA
TTTCAGAGCAACACTGCATGACGGAGAAGATTTGAAATCAGTTGTTTCGT
ACAATCCAAACCTTCATCCAGTGATGAAGAAGGCAAAGTTGACAGACCAA
CCTGTCAAAATCTCTCAATTCACAGAAATTGTCAACAGCTATGACCATAC
AAAAGACTTCAAATTGGGCAACCATTCAACAGTGGAACTTTCTTCGGCTC
CGTTATCTTTTGACCGAGTGAAAAATTTAATCCAAGAGTCCACCTCTATG
ACCAACATGATTGATGCTATTGACCAAGCTGTAGGTGATTTTGTCAACGT
GGAAGTGTATGTAGAATTGGCTGACTCCACAATCGAAGAAGTTCCAACCA
GATACGGAGTTAAAAGAAGTGGACCCTACAGGTTCATGGATGTGAAGATC
AACAGCTTTAATGGCAAGTATTCCACGACTACAGCCAACACAGTTGTCTC
TAAATCAGCAGCAAGTTCACTTCAACCAATGGAAGTCAGCCAGCCACAAA
TCAAGACTGTCATGTCACCAGCCAAGACGATTGACCTATTTGAGCAAATC
TACTACTGTCCAAAATGCAACCAAAAGTCCCTTCCATCAgacggaccatt
tttgaagtgtCAAAATTGTGGTGGTAAATCCCTGTTAGAAGATGCACCAA
CCAGATTTAATGTGAGACTGTCATTTGAAGAACGCCTAACACTTACTGTG
CCGCATGATTTACTTCAAGCATTATCCCTCGGAGTAAACATTgatgtcca
tgatgaaatgtTTCAGGTTGCCTTATTGTCAAAAAAGTACTCCATCAAGT
TTTCATACTCTGAACAATCTAAACACATCaacaagtttgaaattttgaaa
aagtgactaTTAAACATTGCATTTTGTTGATATTCTTTATACCTAGGGAT
agatgtttatttttgttttatactTAACTTAAATCTTAACACAAAAACTT
GGACTCAAGTCAAATCACACTGTTAAAAGATCTTATTCTTTTGTTTGCTT
TTCAAACGTTGGAC Run BLAST on NCBI protein sequence of TCONS_00047306-protein >TCONS_00047306-protein ID=TCONS_00047306-protein|Name=TCONS_00047306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
MARNNKFNKKQGGENTSKLPQDTSQLSEDTFSTQDRDIPMSQSSQPQPEM
EAEAFDDIPSSQRELKAESNFSNADTAFQDSNAGPSTPTKSMRVASTPRQ
STPSPSTPKKRGLEDTYHGYVLKLTNVTTAGSPSKSKYFRATLHDGEDLK
SVVSYNPNLHPVMKKAKLTDQPVKISQFTEIVNSYDHTKDFKLGNHSTVE
LSSAPLSFDRVKNLIQESTSMTNMIDAIDQAVGDFVNVEVYVELADSTIE
EVPTRYGVKRSGPYRFMDVKINSFNGKYSTTTANTVVSKSAASSLQPMEV
SQPQIKTVMSPAKTIDLFEQIYYCPKCNQKSLPSDGPFLKCQNCGGKSLL
EDAPTRFNVRLSFEERLTLTVPHDLLQALSLGVNIDVHDEMFQVALLSKK
YSIKFSYSEQSKHINKFEILKK Run BLAST on NCBI transcript from alignment at scaffold_125:905..3552+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047306 ID=TCONS_00047306|Name=TCONS_00047306|organism=Clytia hemisphaerica|type=transcript|length=2648bp|location=Sequence derived from alignment at scaffold_125:905..3552+ (Clytia hemisphaerica)
GTTTCAAACAAGCGTAGAACCAACACGTCAGTCGTAAATGGCTAGAAACA
ACAAGTTCAATAAAAAACAAGGTAATTTTTGAATTTACAATTAGTAATTG
AATCATTAATCGAAATTGAATATCATTCATCGTGGATTTTCAAGTTTCTA
AGCTTTCTTGGGCATTAaactatgattttttttgagGAAAGAAAATCCTc
ttgaccaatcaaatttctaaaCCCAAATAATTACTTCATAGGTGGGGAGA
ACACCTCTAAACTTCCACAGGACACTTCCCAACTCAGTGAGGACACTTTT
AGTACTCAGGATCGAGACATTCCAATGAGTCAATCGAGTCAACCCCAGCC
AGAGATGGAAGCAGAAGCATTTGATGACATTCCATCAAGCCAACGAGAGT
TAAAGGCAGAATCAAACTTCTCAAATGCAGGTATATCATTATGAACGTGC
ACATTCAGACACTGTAAAAGCTAACATTAGATTAGGTCCCTTCCCTTTAG
AGGGGGAGTGGGTCAGGCATCGTTATTCTCAATTTCCTTGACATCTCTTG
ACCTGGCTAGTAGGTTGTGATCCTGGGACAATTCATTATCCTCTTTGTTC
CCCAGAAGTTATGTTGGCTAAACAAATTTCATTTGGCATTAGGTTTTCAG
AGGGAATTATATTTGATTGATTCACCATAATTAATTTTGTTGAGAATTTA
ATTTCAAGGATGCTAACAGGTATCAAGGttcaatttcaaagtgaaaatgT
AAAATACACTTATTTTTCAGTGTTGTTTATTacccttgaaaaaattttca
ccgaaattccttttttgtgaGTGTGGAGAAAAGAAATGTCAAGACCCTTT
TTATAGGTCCCCTGATggaaaaaactaaacaaaataaCACAAAATACCCT
ATATTGGATTTTATTAATACAAATATAATTAAATTACAGACACANAGGGG
AAAAGAAATGTCAAGACCCTTTTTTTTAAAGGTCCCCTGAtggaaaaact
aaacaaaaTGACACAAAATACGTATATTGGATTTTATTAATACAGGTATA
ATTAAATTACAGACACAGCTTTCCAAGATTCAAATGCAGGCCCTTCAACA
CCTACAAAATCAATGCGAGTGGCGTCAACACCTAGACAATCAACGCCAAG
CCCGTCAACACCAAAGAAACGTGGGTTAGAGGACAGTAAGTCTTGATGCT
ATAACAgtcaatttcttagaaaaagaaacattttaattttAGCTTACATC
ATGTTACTCAAATTTCTTCACATAAACTCATCAGCAGCTATGTAAAACGA
ATAAATGCATCATTAATTTTCTCTACAATGACTCCCTTGTCAATTATGTA
TCACTTATATATACTAAAATTTCTAGGATTTAGAAGAGGGGTTTGTTGCT
CACACTGTAGGCGTTTTGAAactgaattttcaaagaaattccaAACATTT
TATTAATAAACATCTTTTAGGTTGGAAATTAACACCTCCCCTCCTACAAT
TAAGCATAGAAGAGTACTTTGTGCTTTTCAGACTTTCATGCTTGTTCTCA
TTCTGCTTTTTTTACAGCATATCATGgttatgttttaaaattaacAAATG
TTACGACAGCTGGGTCACCGTCTAAATCGAAATATTTCAGAGCAACACTG
CATGACGGAGAAGATTTGAAATCAGTTGTTTCGTACAATCCAAACCTTCA
TCCAGTGATGAAGAAGGCAAAGTTGACAGACCAACCTGTCAAAATCTCTC
AATTCACAGAAATTGTCAACAGCTATGACCATACAAAAGACTTCAAATTG
GGCAACCATTCAACAGTGGAACTTTCTTCGGCTCCGTTATCTTTTGACCG
AGTGAAAAATTTAATCCAAGAGTCCACCTCTATGACCAACATGATTGATG
CTATTGACCAAGCTGTAGGTGATTTTGTCAACGTGGAAGTGTATGTAGAA
TTGGCTGACTCCACAATCGAAGAAGTTCCAACCAGATACGGAGTTAAAAG
AAGTGGACCCTACAGGTTCATGGATGTGAAGATCAACAGCTTTAATGGCA
AGTATTCCACGACTACAGCCAACACAGTTGTCTCTAAATCAGCAGCAAGT
TCACTTCAACCAATGGAAGTCAGCCAGCCACAAATCAAGACTGTCATGTC
ACCAGCCAAGACGATTGACCTATTTGAGCAAATCTACTACTGTCCAAAAT
GCAACCAAAAGTCCCTTCCATCAgacggaccatttttgaagtgtCAAAAT
TGTGGTGGTAAATCCCTGTTAGAAGATGCACCAACCAGATTTAATGTGAG
ACTGTCATTTGAAGAACGCCTAACACTTACTGTGCCGCATGATTTACTTC
AAGCATTATCCCTCGGAGTAAACATTgatgtccatgatgaaatgtTTCAG
GTTGCCTTATTGTCAAAAAAGTACTCCATCAAGTTTTCATACTCTGAACA
ATCTAAACACATCaacaagtttgaaattttgaaaaagtgactaTTAAACA
TTGCATTTTGTTGATATTCTTTATACCTAGGGATagatgtttatttttgt
tttatactTAACTTAAATCTTAACACAAAAACTTGGACTCAAGTCAAATC
ACACTGTTAAAAGATCTTATTCTTTTGTTTGCTTTTCAAACGTTGGAC Coding sequence (CDS) from alignment at scaffold_125:905..3552+ >TCONS_00047306 ID=TCONS_00047306|Name=TCONS_00047306|organism=Clytia hemisphaerica|type=CDS|length=5076bp|location=Sequence derived from alignment at scaffold_125:905..3552+ (Clytia hemisphaerica)
ATGGCTAGAAACAACAAGTTCAATAAAAAACAAGGTGGGGAGAACACCTC
TAAACTTCCACAGGACACTTCCCAACTCAGTGAGGACACTTTTAGTACTC
AGGATCGAGACATTCCAATGAGTCAATCGAGTCAACCCCAGCCAGAGATG
GAAGCAGAAGCATTTGATGACATTCCATCAAGCCAACGAGAGTTAAAGGC
AGAATCAAACTTCTCAAATGCAGACACAGCTTTCCAAGATTCAAATGCAG
GCCCTTCAACACCTACAAAATCAATGCGAGTGGCGTCAACACCTAGACAA
TCAACGCCAAGCCCGTCAACACCAAAGAAACGTGGGTTAGAGGACACATA
TCATGgttatgttttaaaattaacAAATGTTACGACAGCTGGGTCACCGT
CTAAATCGAAATATTTCAGAGCAACACTGCATGACGGAGAAGATTTGAAA
TCAGTTGTTTCGTACAATCCAAACCTTCATCCAGTGATGAAGAAGGCAAA
GTTGACAGACCAACCTGTCAAAATCTCTCAATTCACAGAAATTGTCAACA
GCTATGACCATACAAAAGACTTCAAATTGGGCAACCATTCAACAGTGGAA
CTTTCTTCGGCTCCGTTATCTTTTGACCGAGTGAAAAATTTAATCCAAGA
GTCCACCTCTATGACCAACATGATTGATGCTATTGACCAAGCTGTAGGTG
ATTTTGTCAACGTGGAAGTGTATGTAGAATTGGCTGACTCCACAATCGAA
GAAGTTCCAACCAGATACGGAGTTAAAAGAAGTGGACCCTACAGGTTCAT
GGATGTGAAGATCAACAGCTTTAATGGCAAGTATTCCACGACTACAGCCA
ACACAGTTGTCTCTAAATCAGCAGCAAGTTCACTTCAACCAATGGAAGTC
AGCCAGCCACAAATCAAGACTGTCATGTCACCAGCCAAGACGATTGACCT
ATTTGAGCAAATCTACTACTGTCCAAAATGCAACCAAAAGTCCCTTCCAT
CAgacggaccatttttgaagtgtCAAAATTGTGGTGGTAAATCCCTGTTA
GAAGATGCACCAACCAGATTTAATGTGAGACTGTCATTTGAAGAACGCCT
AACACTTACTGTGCCGCATGATTTACTTCAAGCATTATCCCTCGGAGTAA
ACATTgatgtccatgatgaaatgtTTCAGGTTGCCTTATTGTCAAAAAAG
TACTCCATCAAGTTTTCATACTCTGAACAATCTAAACACATCaacaagtt
tgaaattttgaaaaagtgaATGGCTAGAAACAACAAGTTCAATAAAAAAC
AAGGTGGGGAGAACACCTCTAAACTTCCACAGGACACTTCCCAACTCAGT
GAGGACACTTTTAGTACTCAGGATCGAGACATTCCAATGAGTCAATCGAG
TCAACCCCAGCCAGAGATGGAAGCAGAAGCATTTGATGACATTCCATCAA
GCCAACGAGAGTTAAAGGCAGAATCAAACTTCTCAAATGCAGACACAGCT
TTCCAAGATTCAAATGCAGGCCCTTCAACACCTACAAAATCAATGCGAGT
GGCGTCAACACCTAGACAATCAACGCCAAGCCCGTCAACACCAAAGAAAC
GTGGGTTAGAGGACACATATCATGgttatgttttaaaattaacAAATGTT
ACGACAGCTGGGTCACCGTCTAAATCGAAATATTTCAGAGCAACACTGCA
TGACGGAGAAGATTTGAAATCAGTTGTTTCGTACAATCCAAACCTTCATC
CAGTGATGAAGAAGGCAAAGTTGACAGACCAACCTGTCAAAATCTCTCAA
TTCACAGAAATTGTCAACAGCTATGACCATACAAAAGACTTCAAATTGGG
CAACCATTCAACAGTGGAACTTTCTTCGGCTCCGTTATCTTTTGACCGAG
TGAAAAATTTAATCCAAGAGTCCACCTCTATGACCAACATGATTGATGCT
ATTGACCAAGCTGTAGGTGATTTTGTCAACGTGGAAGTGTATGTAGAATT
GGCTGACTCCACAATCGAAGAAGTTCCAACCAGATACGGAGTTAAAAGAA
GTGGACCCTACAGGTTCATGGATGTGAAGATCAACAGCTTTAATGGCAAG
TATTCCACGACTACAGCCAACACAGTTGTCTCTAAATCAGCAGCAAGTTC
ACTTCAACCAATGGAAGTCAGCCAGCCACAAATCAAGACTGTCATGTCAC
CAGCCAAGACGATTGACCTATTTGAGCAAATCTACTACTGTCCAAAATGC
AACCAAAAGTCCCTTCCATCAgacggaccatttttgaagtgtCAAAATTG
TGGTGGTAAATCCCTGTTAGAAGATGCACCAACCAGATTTAATGTGAGAC
TGTCATTTGAAGAACGCCTAACACTTACTGTGCCGCATGATTTACTTCAA
GCATTATCCCTCGGAGTAAACATTgatgtccatgatgaaatgtTTCAGGT
TGCCTTATTGTCAAAAAAGTACTCCATCAAGTTTTCATACTCTGAACAAT
CTAAACACATCaacaagtttgaaattttgaaaaagtgaATGGCTAGAAAC
AACAAGTTCAATAAAAAACAAGGTGGGGAGAACACCTCTAAACTTCCACA
GGACACTTCCCAACTCAGTGAGGACACTTTTAGTACTCAGGATCGAGACA
TTCCAATGAGTCAATCGAGTCAACCCCAGCCAGAGATGGAAGCAGAAGCA
TTTGATGACATTCCATCAAGCCAACGAGAGTTAAAGGCAGAATCAAACTT
CTCAAATGCAGACACAGCTTTCCAAGATTCAAATGCAGGCCCTTCAACAC
CTACAAAATCAATGCGAGTGGCGTCAACACCTAGACAATCAACGCCAAGC
CCGTCAACACCAAAGAAACGTGGGTTAGAGGACACATATCATGgttatgt
tttaaaattaacAAATGTTACGACAGCTGGGTCACCGTCTAAATCGAAAT
ATTTCAGAGCAACACTGCATGACGGAGAAGATTTGAAATCAGTTGTTTCG
TACAATCCAAACCTTCATCCAGTGATGAAGAAGGCAAAGTTGACAGACCA
ACCTGTCAAAATCTCTCAATTCACAGAAATTGTCAACAGCTATGACCATA
CAAAAGACTTCAAATTGGGCAACCATTCAACAGTGGAACTTTCTTCGGCT
CCGTTATCTTTTGACCGAGTGAAAAATTTAATCCAAGAGTCCACCTCTAT
GACCAACATGATTGATGCTATTGACCAAGCTGTAGGTGATTTTGTCAACG
TGGAAGTGTATGTAGAATTGGCTGACTCCACAATCGAAGAAGTTCCAACC
AGATACGGAGTTAAAAGAAGTGGACCCTACAGGTTCATGGATGTGAAGAT
CAACAGCTTTAATGGCAAGTATTCCACGACTACAGCCAACACAGTTGTCT
CTAAATCAGCAGCAAGTTCACTTCAACCAATGGAAGTCAGCCAGCCACAA
ATCAAGACTGTCATGTCACCAGCCAAGACGATTGACCTATTTGAGCAAAT
CTACTACTGTCCAAAATGCAACCAAAAGTCCCTTCCATCAgacggaccat
ttttgaagtgtCAAAATTGTGGTGGTAAATCCCTGTTAGAAGATGCACCA
ACCAGATTTAATGTGAGACTGTCATTTGAAGAACGCCTAACACTTACTGT
GCCGCATGATTTACTTCAAGCATTATCCCTCGGAGTAAACATTgatgtcc
atgatgaaatgtTTCAGGTTGCCTTATTGTCAAAAAAGTACTCCATCAAG
TTTTCATACTCTGAACAATCTAAACACATCaacaagtttgaaattttgaa
aaagtgaATGGCTAGAAACAACAAGTTCAATAAAAAACAAGGTGGGGAGA
ACACCTCTAAACTTCCACAGGACACTTCCCAACTCAGTGAGGACACTTTT
AGTACTCAGGATCGAGACATTCCAATGAGTCAATCGAGTCAACCCCAGCC
AGAGATGGAAGCAGAAGCATTTGATGACATTCCATCAAGCCAACGAGAGT
TAAAGGCAGAATCAAACTTCTCAAATGCAGACACAGCTTTCCAAGATTCA
AATGCAGGCCCTTCAACACCTACAAAATCAATGCGAGTGGCGTCAACACC
TAGACAATCAACGCCAAGCCCGTCAACACCAAAGAAACGTGGGTTAGAGG
ACACATATCATGgttatgttttaaaattaacAAATGTTACGACAGCTGGG
TCACCGTCTAAATCGAAATATTTCAGAGCAACACTGCATGACGGAGAAGA
TTTGAAATCAGTTGTTTCGTACAATCCAAACCTTCATCCAGTGATGAAGA
AGGCAAAGTTGACAGACCAACCTGTCAAAATCTCTCAATTCACAGAAATT
GTCAACAGCTATGACCATACAAAAGACTTCAAATTGGGCAACCATTCAAC
AGTGGAACTTTCTTCGGCTCCGTTATCTTTTGACCGAGTGAAAAATTTAA
TCCAAGAGTCCACCTCTATGACCAACATGATTGATGCTATTGACCAAGCT
GTAGGTGATTTTGTCAACGTGGAAGTGTATGTAGAATTGGCTGACTCCAC
AATCGAAGAAGTTCCAACCAGATACGGAGTTAAAAGAAGTGGACCCTACA
GGTTCATGGATGTGAAGATCAACAGCTTTAATGGCAAGTATTCCACGACT
ACAGCCAACACAGTTGTCTCTAAATCAGCAGCAAGTTCACTTCAACCAAT
GGAAGTCAGCCAGCCACAAATCAAGACTGTCATGTCACCAGCCAAGACGA
TTGACCTATTTGAGCAAATCTACTACTGTCCAAAATGCAACCAAAAGTCC
CTTCCATCAgacggaccatttttgaagtgtCAAAATTGTGGTGGTAAATC
CCTGTTAGAAGATGCACCAACCAGATTTAATGTGAGACTGTCATTTGAAG
AACGCCTAACACTTACTGTGCCGCATGATTTACTTCAAGCATTATCCCTC
GGAGTAAACATTgatgtccatgatgaaatgtTTCAGGTTGCCTTATTGTC
AAAAAAGTACTCCATCAAGTTTTCATACTCTGAACAATCTAAACACATCa
acaagtttgaaattttgaaaaagtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047306-exon-scaffold_125-1491911889:905..975 | TCONS_00047306-exon-scaffold_125-1491911889:905..975 | Clytia hemisphaerica | exon |
| TCONS_00047306-exon-scaffold_125-1510915933:905..975 | TCONS_00047306-exon-scaffold_125-1510915933:905..975 | Clytia hemisphaerica | exon |
| TCONS_00047306-exon-scaffold_125-1575043694:905..975 | TCONS_00047306-exon-scaffold_125-1575043694:905..975 | Clytia hemisphaerica | exon |
| TCONS_00047306-exon-scaffold_125-1491911889:1146..1334 | TCONS_00047306-exon-scaffold_125-1491911889:1146..1334 | Clytia hemisphaerica | exon |
| TCONS_00047306-exon-scaffold_125-1510915933:1146..1334 | TCONS_00047306-exon-scaffold_125-1510915933:1146..1334 | Clytia hemisphaerica | exon |
| TCONS_00047306-exon-scaffold_125-1575043694:1146..1334 | TCONS_00047306-exon-scaffold_125-1575043694:1146..1334 | Clytia hemisphaerica | exon |
| TCONS_00047306-exon-scaffold_125-1491911889:1967..2089 | TCONS_00047306-exon-scaffold_125-1491911889:1967..2089 | Clytia hemisphaerica | exon |
| TCONS_00047306-exon-scaffold_125-1510915933:1967..2089 | TCONS_00047306-exon-scaffold_125-1510915933:1967..2089 | Clytia hemisphaerica | exon |
| TCONS_00047306-exon-scaffold_125-1575043694:1967..2089 | TCONS_00047306-exon-scaffold_125-1575043694:1967..2089 | Clytia hemisphaerica | exon |
| TCONS_00047306-exon-scaffold_125-1491911889:2472..3552 | TCONS_00047306-exon-scaffold_125-1491911889:2472..3552 | Clytia hemisphaerica | exon |
| TCONS_00047306-exon-scaffold_125-1510915933:2472..3552 | TCONS_00047306-exon-scaffold_125-1510915933:2472..3552 | Clytia hemisphaerica | exon |
| TCONS_00047306-exon-scaffold_125-1575043694:2472..3552 | TCONS_00047306-exon-scaffold_125-1575043694:2472..3552 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_125 | supercontig | scaffold_125:905..3552 + |
Blast
The following BLAST results are available for this feature:
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