TCONS_00047305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047305
Unique NameTCONS_00047305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047305 ID=TCONS_00047305|Name=TCONS_00047305|organism=Clytia hemisphaerica|type=transcript|length=517bp
caattaacgattaattgctctctttgaaggcgcgccaaataagaaaaaat
agctcatcgtgcgattaagcCCAAAAGCCTTCAGTTGACCATCTAAAAGC
ACTTAAGAAAGTGTTACATAACCTTTAGCTAACCTcaacaaaatcaacca
aaaatgCCCAAGAATTCAGGCAATTATCATAGTTGTGATTCTAAGCCTCA
AAAACTCTCCCAAATTATTGCCTTAAAATGCTCAATCCAATAAGGGGTCA
ACAatctcccaactccttttcaaactcaagATATCCTTTTTGAAGTTTTC
CCCAAATCTATGATGTTATTGGGTCATTTTACCTTTGCAATTAAATGGTA
CCTTGTGCCCCaaggtccaaaaaacaaaattgtgCCAATTATTTACCAGT
GGTATGAAAATGAGTCAAATTTTATGACACCTTTACTGCCAATATTGTCA
TCATCTTGATGtatccaaaattttattttaatttgaagCTAGCAGtttgt
taaaagttttatttttc
Run BLAST on NCBI

transcript from alignment at scaffold_124:263981..264497

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047305 ID=TCONS_00047305|Name=TCONS_00047305|organism=Clytia hemisphaerica|type=transcript|length=517bp|location=Sequence derived from alignment at scaffold_124:263981..264497 (Clytia hemisphaerica)
gaaaaataaaacttttaacaaaCTGCTAGcttcaaattaaaataaaattt
tggataCATCAAGATGATGACAATATTGGCAGTAAAGGTGTCATAAAATT
TGACTCATTTTCATACCACTGGTAAATAATTGGcacaattttgttttttg
gaccttGGGGCACAAGGTACCATTTAATTGCAAAGGTAAAATGACCCAAT
AACATCATAGATTTGGGGAAAACTTCAAAAAGGATATcttgagtttgaaa
aggagttgggagatTGTTGACCCCTTATTGGATTGAGCATTTTAAGGCAA
TAATTTGGGAGAGTTTTTGAGGCTTAGAATCACAACTATGATAATTGCCT
GAATTCTTGGGcatttttggttgattttgttgAGGTTAGCTAAAGGTTAT
GTAACACTTTCTTAAGTGCTTTTAGATGGTCAACTGAAGGCTTTTGGgct
taatcgcacgatgagctattttttcttatttggcgcgccttcaaagagag
caattaatcgttaattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030135XLOC_030135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047305-exon-scaffold_124-1491911889:263981..264497TCONS_00047305-exon-scaffold_124-1491911889:263981..264497Clytia hemisphaericaexon
TCONS_00047305-exon-scaffold_124-1510915933:263981..264497TCONS_00047305-exon-scaffold_124-1510915933:263981..264497Clytia hemisphaericaexon
TCONS_00047305-exon-scaffold_124-1575043694:263981..264497TCONS_00047305-exon-scaffold_124-1575043694:263981..264497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_124supercontigscaffold_124:263981..264497 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.115187	0.116821	1.71422	1.91395	0	0.122749	0.296183	0	0.0978143	0.121326	0	0.2317	0	0	0.0657667	0	0.259412	0.0889908	0	0	0.112073	0	0	0.240145	0	0.559566	0	0	0.127849	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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