TCONS_00047302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047302
Unique NameTCONS_00047302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047302 ID=TCONS_00047302|Name=TCONS_00047302|organism=Clytia hemisphaerica|type=transcript|length=389bp
NNGAAGTTGAAAGGCCATTCGTACTGCCACTCAAAGGGATTTGGTCATTC
TATCAAGCTTGGCGATCAATTGCTCACCAGATGTCATGGTCCAGAATTCT
TTTAAAATGCCATTCTGAACGCATAAATGTGCAAACCATCACATATGGCT
ACACATTTTGTCAATGTTTGCGAAATATTCTCCGAGACAAAATTGTGAAA
CTTGAGTCCATGAAGTGAACATGAAAACTGATAGAACATTCGTTGAAACT
TGGTACCTGGACGTTAGGACATTTAGAAATATTAAGTGTTGATGTAAATA
TCAAATTGGTTTTATAGAATTTTATATGAAGAAGAAATCAAAGTGTAGgg
tttaaatgttttttcttttgtattcaaattatttaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_124:116313..116701

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047302 ID=TCONS_00047302|Name=TCONS_00047302|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at scaffold_124:116313..116701 (Clytia hemisphaerica)
gttttaaataatttgaatacaaaagaaaaaacatttaaaccCTACACTTT
GATTTCTTCTTCATATAAAATTCTATAAAACCAATTTGATATTTACATCA
ACACTTAATATTTCTAAATGTCCTAACGTCCAGGTACCAAGTTTCAACGA
ATGTTCTATCAGTTTTCATGTTCACTTCATGGACTCAAGTTTCACAATTT
TGTCTCGGAGAATATTTCGCAAACATTGACAAAATGTGTAGCCATATGTG
ATGGTTTGCACATTTATGCGTTCAGAATGGCATTTTAAAAGAATTCTGGA
CCATGACATCTGGTGAGCAATTGATCGCCAAGCTTGATAGAATGACCAAA
TCCCTTTGAGTGGCAGTACGAATGGCCTTTCAACTTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030132XLOC_030132Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047302-exon-scaffold_124-1491911889:116313..116701TCONS_00047302-exon-scaffold_124-1491911889:116313..116701Clytia hemisphaericaexon
TCONS_00047302-exon-scaffold_124-1510915933:116313..116701TCONS_00047302-exon-scaffold_124-1510915933:116313..116701Clytia hemisphaericaexon
TCONS_00047302-exon-scaffold_124-1575043694:116313..116701TCONS_00047302-exon-scaffold_124-1575043694:116313..116701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_124supercontigscaffold_124:116313..116701 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.0545	29.2147	32.3589	25.5449	51.0333	31.5056	36.4898	32.2634	29.232	31.4768	16.9734	23.4967	19.1383	15.2468	23.3911	23.0604	37.8781	27.6013	6.2856	10.7431	35.2547	33.1837	58.7572	44.9951	15.6596	20.7748	18.1075	17.8827	32.3771	31.4269
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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