TCONS_00047301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047301
Unique NameTCONS_00047301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047301 ID=TCONS_00047301|Name=TCONS_00047301|organism=Clytia hemisphaerica|type=transcript|length=371bp
CATAATACATAACAAATATATACAACATATGACATTATTCTTGGCGATGA
AGATAAAACACCATTATTTTTGTTCTGGCTGGGATGAAATGAAGTGATAA
GGCATCAACACTACCTTTGTAGCAAGTCATAATTCTTGGTTTGTATCTCT
ACTTGGTACACAAACCATATAAGACTAAGCCATACCTCACTTGTGTTACC
TGTTTCAGCTTTCACTAAGTCATTGGTGAACCACCAGACAAAACATATTG
TCTGGTCTGTATGTAATACATAAAATCCTTGAATTGCTCAGAAACACAAG
TTTGCGGTAAGTTGAAAACCCTACTTTAACGATAATATATTAAATTCATA
CTCATTCAGCTTTCACAGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_124:85708..86078

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047301 ID=TCONS_00047301|Name=TCONS_00047301|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at scaffold_124:85708..86078 (Clytia hemisphaerica)
CACCTGTGAAAGCTGAATGAGTATGAATTTAATATATTATCGTTAAAGTA
GGGTTTTCAACTTACCGCAAACTTGTGTTTCTGAGCAATTCAAGGATTTT
ATGTATTACATACAGACCAGACAATATGTTTTGTCTGGTGGTTCACCAAT
GACTTAGTGAAAGCTGAAACAGGTAACACAAGTGAGGTATGGCTTAGTCT
TATATGGTTTGTGTACCAAGTAGAGATACAAACCAAGAATTATGACTTGC
TACAAAGGTAGTGTTGATGCCTTATCACTTCATTTCATCCCAGCCAGAAC
AAAAATAATGGTGTTTTATCTTCATCGCCAAGAATAATGTCATATGTTGT
ATATATTTGTTATGTATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030131XLOC_030131Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047301-exon-scaffold_124-1491911889:85708..86078TCONS_00047301-exon-scaffold_124-1491911889:85708..86078Clytia hemisphaericaexon
TCONS_00047301-exon-scaffold_124-1510915933:85708..86078TCONS_00047301-exon-scaffold_124-1510915933:85708..86078Clytia hemisphaericaexon
TCONS_00047301-exon-scaffold_124-1575043694:85708..86078TCONS_00047301-exon-scaffold_124-1575043694:85708..86078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_124supercontigscaffold_124:85708..86078 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.84698	3.84404	2.23165	1.94073	2.06732	0.9335	1.40779	1.05436	2.21455	3.20026	3.55	1.75022	2.33038	4.23522	1.3679	3.87009	2.63042	2.8646	0.931201	1.70526	3.81132	3.09838	6.77968	5.02228	0.470258	0	2.70261	1.28191	6.31985	5.69597
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top