TCONS_00047300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047300
Unique NameTCONS_00047300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length695

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047300 ID=TCONS_00047300|Name=TCONS_00047300|organism=Clytia hemisphaerica|type=transcript|length=695bp
ACTTATTATTTTCGTCTTGTTTTAGAGAACTTAGTGAAAACCTTGATCCG
TGGGCGAGGCTATGAAAATCTTGGCTGCCGGAATGATACACCAAAATGTG
CAGAGAAAGCACATTACAACCAATACAATAAAGTGCGTGTGAACACACCT
CCATGTTGCCGTGCCAAAATCATCGAAATGTTCAAACATACTACGAAAGC
CCTTTCGAGAGATAATATTACTCATTTCTTACAGTTCGGTGCATTGATCG
GTTACTATAGGAACCAACACGTGGTGCCCTATGATTCAGATATCGACCTC
TACATGGATAAAGATTATTGGATACAGTCTCATCTGTCACCCATTATTGA
AAACCTTCGAAAGACTTACGGCTACCGATTCGAATTTCATGATGGCggta
tgaaaatgaaagtgtttTATAGCCATAGCAACAACAATAGTATAGACATA
TGGCCTTTCAAAGTTGTGTTTGATAAGCAACAAAGACCATTTGTGAAAAT
ACCTCATGGAGCCGCTGTGAGGCAACCAATGGCCAACATTTTCCCCTTGA
GGGCGGTCCAGTTTGAAGGTATTTGGACCTTTGTGCCCAGGAAGCCGAAA
GAGGTTTTAGATCTTCAGTATGGGGAAGGTTATTGGGAGAAGGAGTTAGA
TTGCAAATACTTTAACATTGATGGTCATTGTATACCACAGTCCTT
Run BLAST on NCBI

protein sequence of Fukutin related protein

>TCONS_00047300-protein ID=TCONS_00047300-protein|Name=Fukutin related protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
TYYFRLVLENLVKTLIRGRGYENLGCRNDTPKCAEKAHYNQYNKVRVNTP
PCCRAKIIEMFKHTTKALSRDNITHFLQFGALIGYYRNQHVVPYDSDIDL
YMDKDYWIQSHLSPIIENLRKTYGYRFEFHDGGMKMKVFYSHSNNNSIDI
WPFKVVFDKQQRPFVKIPHGAAVRQPMANIFPLRAVQFEGIWTFVPRKPK
EVLDLQYGEGYWEKELDCKYFNIDGHCIPQS
Run BLAST on NCBI

transcript from alignment at scaffold_124:35807..36501

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047300 ID=TCONS_00047300|Name=TCONS_00047300|organism=Clytia hemisphaerica|type=transcript|length=695bp|location=Sequence derived from alignment at scaffold_124:35807..36501 (Clytia hemisphaerica)
AAGGACTGTGGTATACAATGACCATCAATGTTAAAGTATTTGCAATCTAA
CTCCTTCTCCCAATAACCTTCCCCATACTGAAGATCTAAAACCTCTTTCG
GCTTCCTGGGCACAAAGGTCCAAATACCTTCAAACTGGACCGCCCTCAAG
GGGAAAATGTTGGCCATTGGTTGCCTCACAGCGGCTCCATGAGGTATTTT
CACAAATGGTCTTTGTTGCTTATCAAACACAACTTTGAAAGGCCATATGT
CTATACTATTGTTGTTGCTATGGCTATAaaacactttcattttcataccG
CCATCATGAAATTCGAATCGGTAGCCGTAAGTCTTTCGAAGGTTTTCAAT
AATGGGTGACAGATGAGACTGTATCCAATAATCTTTATCCATGTAGAGGT
CGATATCTGAATCATAGGGCACCACGTGTTGGTTCCTATAGTAACCGATC
AATGCACCGAACTGTAAGAAATGAGTAATATTATCTCTCGAAAGGGCTTT
CGTAGTATGTTTGAACATTTCGATGATTTTGGCACGGCAACATGGAGGTG
TGTTCACACGCACTTTATTGTATTGGTTGTAATGTGCTTTCTCTGCACAT
TTTGGTGTATCATTCCGGCAGCCAAGATTTTCATAGCCTCGCCCACGGAT
CAAGGTTTTCACTAAGTTCTCTAAAACAAGACGAAAATAATAAGT

Coding sequence (CDS) from alignment at scaffold_124:35807..36501

>TCONS_00047300 ID=TCONS_00047300|Name=TCONS_00047300|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at scaffold_124:35807..36501 (Clytia hemisphaerica)
GGACTGTGGTATACAATGACCATCAATGTTAAAGTATTTGCAATCTAACT
CCTTCTCCCAATAACCTTCCCCATACTGAAGATCTAAAACCTCTTTCGGC
TTCCTGGGCACAAAGGTCCAAATACCTTCAAACTGGACCGCCCTCAAGGG
GAAAATGTTGGCCATTGGTTGCCTCACAGCGGCTCCATGAGGTATTTTCA
CAAATGGTCTTTGTTGCTTATCAAACACAACTTTGAAAGGCCATATGTCT
ATACTATTGTTGTTGCTATGGCTATAaaacactttcattttcataccGCC
ATCATGAAATTCGAATCGGTAGCCGTAAGTCTTTCGAAGGTTTTCAATAA
TGGGTGACAGATGAGACTGTATCCAATAATCTTTATCCATGTAGAGGTCG
ATATCTGAATCATAGGGCACCACGTGTTGGTTCCTATAGTAACCGATCAA
TGCACCGAACTGTAAGAAATGAGTAATATTATCTCTCGAAAGGGCTTTCG
TAGTATGTTTGAACATTTCGATGATTTTGGCACGGCAACATGGAGGTGTG
TTCACACGCACTTTATTGTATTGGTTGTAATGTGCTTTCTCTGCACATTT
TGGTGTATCATTCCGGCAGCCAAGATTTTCATAGCCTCGCCCACGGATCA
AGGTTTTCACTAAGTTCTCTAAAACAAGACGAAAATAATAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030130XLOC_030130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047300-exon-scaffold_124-1491911889:35807..36501TCONS_00047300-exon-scaffold_124-1491911889:35807..36501Clytia hemisphaericaexon
TCONS_00047300-exon-scaffold_124-1510915933:35807..36501TCONS_00047300-exon-scaffold_124-1510915933:35807..36501Clytia hemisphaericaexon
TCONS_00047300-exon-scaffold_124-1575043694:35807..36501TCONS_00047300-exon-scaffold_124-1575043694:35807..36501Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Fukutin related proteinTCONS_00047300-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_124supercontigscaffold_124:35807..36501 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.071186	0	0	0.492219	0.46675	0.0938523	0.0878634	0.615153	0.304786	1.10937	0.777876	1.21374	0.554612	0.746127	2.62455	0.931607	1.23571	0.1552	0	0.56464	0.619676	0.418499	0.228286	0.156753	0.279796	0.100097	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007074LicD_fam
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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