TCONS_00047295 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047295
Unique NameTCONS_00047295
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047295 ID=TCONS_00047295|Name=TCONS_00047295|organism=Clytia hemisphaerica|type=transcript|length=521bp
CTCTGCCTCCCCGCCCCCCAGCAGAAAAAAGATGATGCAATGTTTTGAAG
CACGAGTAATTTCATAATGGCGGAATGAACTGTGCTGTAAATTCATTGCG
GAAGTTTACTTTTGGTCATAAATCATTTTTCACACGTGGAATATCCTCTT
CATATGCATTACTTCAAAAGAATATGGCAAAGAACATAGGTGAAAGTTAC
AATTTTCCTAAAGAAGAGGAGAATATCCTTGAACTATGGAAAGATATAGA
TGCCTTCCGGACTTCTCTAAAGTTATCCGAAGGAAAACCCAGATATTCTT
TTTATGATGGACCTCCATTTGCAACTGGACTTCCACATTATGGTCATATT
CTGGCAGGAACTATCAAAGATATTGTTACAAGATATGCGCACCAGTCTGG
TTTTCATGTTGAGAGAAGATTTGGCTGGGATACTCATGGCTTGCCAGTGG
TATGTTTTCAAACTACTTGCTAGATTGATTATTGGCCCAAATCGACAACC
AAACTGTTTTAATATTGAAGT
Run BLAST on NCBI

protein sequence of TCONS_00047295-protein

>TCONS_00047295-protein ID=TCONS_00047295-protein|Name=TCONS_00047295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MNCAVNSLRKFTFGHKSFFTRGISSSYALLQKNMAKNIGESYNFPKEEEN
ILELWKDIDAFRTSLKLSEGKPRYSFYDGPPFATGLPHYGHILAGTIKDI
VTRYAHQSGFHVERRFGWDTHGLPVVCFQTTC
Run BLAST on NCBI

transcript from alignment at scaffold_124:208517..222919-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047295 ID=TCONS_00047295|Name=TCONS_00047295|organism=Clytia hemisphaerica|type=transcript|length=14403bp|location=Sequence derived from alignment at scaffold_124:208517..222919- (Clytia hemisphaerica)
CTCTGCCTCCCCGCCCCCCAGCAGAAAAAAGATGATGCAATGTTTTGAAG
CACGAGTAATTTCATAATGGCGGAATGAACTGTGCTGTAAATTCATTGCG
GAAGTTTACTTTTGGTCATAAATCATTTTTCACACGTGGAATATCCTCTT
CATATGCATTACTTCAAAAGAATATGGCAAAGAACATAGGTGAAAGTTAC
AATTTTCCTAAAGAAGAGGAGAATATCCTTGAACTATGGAAAGATATAGA
TGCCTTCCGGACTTCTCTAAAGTTATCCGAAGGAAAACCCAGGTATTGAT
GGCTATTCCATTATTTTTGATCCAGACAGGGGTGAATTATTCCAGGGGGG
GGGGTCTGAGTTTGGATTTTCCAATGGTTTTTCAGGACTGCATCAAACAT
TCAGACTAGAGAGTTTCATTAAGATGGCAACTGTAACAGCAATCAAATTC
ACATCTTATCTTTGGCTGGGCCATCCCAGAAAATTTTTGTTACCCCCCTG
TCGGACGACGTGCACTTTTTAATTCTTTTCTAGCCTCAGAAATATTCTTT
TCCAGTGGTCAGTTACATCAAAATGCCTCGAAAATGTCAATATGAAAATT
GCGTAATCAGAGAACCTATGTCTCGCTCATTATAAAAAGGCCGAGACAAA
CTTTCAATAATTGGATTATAACATCGAGTTAAGTCTCTTTTGTTAAGTCA
CCAGGCAGTGTAGACCTAACTCTTCATACAAAAAATACGGGAAACGCATA
TTTGGACTTTGTACCCTATGCTGCACTCAAGCACCTGGGCCAAAATCCCG
CAAAGACGGGACAAAAATCAGTTTTTTGAAGTTTGCAAAAAAACGCCACA
TAGAAGATCTTTCAAATTCAGTATGTGAATAGAGCAGTAAAAAATACAAC
TTTTCTATTTTTCCTTTTTTTTGCAAAAGTTATAGGAATGAAAATAAAGG
GATAATAATAATTGAATACTATCCATTGATTATCCGCGGCACTATCGTAA
AGCTAGAATCGCTTCGCGTACTCTTCTCTTGAGAAAATGATTGACAGATT
GAAGTTTTTCATCCCCGCGGTGCGCGCCGTGCGGGAGCTCGGGCGCTCTG
CGAGAGTTCTCGGCTCAATCCTCGGACCGCGCCAAAATGGTAGACTGAGC
TGTGATAGATCATTTCGACGGAAGTTGTTGGAATGTTTACAAGGCTCTTG
ACAGAATATTGTTTGTTTTATTGTCAATGATGACAGTGCCGTTATAAATT
TTGTTAAATCTGACAAATTGATGTTTGTAAGTGCACTTTATAGTTTTGAT
TCCCATTGAAGAATCATATTCTGGTTTTCATGTTATTAGATGCTGTTTTA
GAGCTTTAGAGCTACACTGCCAGGGGGTAAATAAAACAGACATTGATACA
TTTATCGTTCGTTTCAACTTGACGATTCGTTTAAAACTCAGCCAGTTAGC
CACACTAGCGTCCCGCCAAAATGCGTATCAAAGATTAATGCTGCGAAAGC
GCTATATCCTTTACTTGACTCTCAAGCAAAAAAATGCACCGCAAAACTTC
TAAAGGGATTCATGAAAAAATAACCCGGCGCTTTTTAATGAAATTAACAT
TTTCAAAAACTTTGAGAGATTGCCTAAAATTTGAGCCATAGATGAAAAAA
TTTGAGCCAAGCCAACCTTGAAAACTAATTTGAAGATCAACTTCGCAAGA
AAAAGATCTACGGGGGAGGCGGAACCCACCTAGATCCGCGCACAGCCGGA
TAGGCTATCTCCCGGAAATTTTACCAGACCTCAAACAATGACCCATTTAC
ATGTGGGTAATTGTTTTTATTTAGCGTATAAACAAGGCCTTAAAAATCGA
AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNACTTGATTCAGGTAACTCTCATCCTTG
TTGTTGAAATGTATCCTGTAGATGACTGATGTTGTTTTTTCTGAAAGCTA
GATTTCCTAGTGTGACTAACTGTCAGCCTCCTAAATATTTGGGGTAGGTA
AAATATGTACAAAGAAATTCATACTTTTCCAACCCGGCTAATCTTTAAAA
AAGAAGCGAACAATAAAATGTAATTACCCTTTCCAAATAAACCTCTTCGG
TGGCGAGCGTAGTCTACTCTGACGTAATTGTAAAATTTATGTAATGGGAG
TTTGACATAGTAATGTAATGTTGTTTGGGGAATTATGAAGTTCTCTGGAA
TTCCAATTGCATTTATTCAGGTTGATTTTTTATGACTTCTAATGGTACTT
TTTCTAACGAGTACTTGATTACTCTGTTCTCACACTTATGTCTTTTTTTT
TCGCGTCCTTTTTCGTGATTACTTTTATTTATATTTTTAAAGACAGGTAA
GAAGGCATATTGATGTAACTGGTGGTGGTCGGAAATTCCGATGAAAATCC
ATGTACTTTCGCAAAATGCATTGGAAATTCCACTCTTTTTTGCCTATTTT
AATTCAATACACCGTTTAGGAGTCTCGCTATCTTCACGGTACTCCATTGC
AGAGGCCGGTAAAAATGGTAGGTAAAAATGCACACTTTAGTACTGTGAAA
GGTTAGAGGAATGTAAACATTGTGTATTTTTTTCTCTCCTTTAACAGTCC
GTCACAAACAGCGATATTTCGAGAGCACGGAAGCGCTTCAAACAGTTAGT
CACACTAGCGTCCCGCCAAAATTCATATCAAAGATTAATGCTGCCAAAGC
GCTTTATCGTTTACTTGACTCTCGAGCAAAAAAATGCACCGCAAAACTTC
TAAAGAGATTCATGAAAAAATAACCCGGCGCTTTTTAATGAAATTAACAT
TTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACACCA
GCTTTTTTGGAGTTTTGTCTCGTTTACCCAAACGCTTCAATCTCGCGTAG
GCTTAGTGGTCAAGACTAGAACCCCCAATACGAGGCATTTGCCTGACCGA
AAAAAAATCATCATCATCAATTTTGTTAGTTGTCAGAATCGTTTACTCAC
TGAAAATACGCAACTTTCTGAAGTTTTGTTTTTTTTCGGTTGTGCTTCAT
TTTAAAAATAACGAAGATGAAAAGTTACCATCAATCCCGCGAGTAAAAAA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTC
ACCATTGATCCTGACTTGACAATGGAGAACCAAATTTGGCAATGCATAAT
TATTACGAGCGGCCGAGAAAGTTTGTGTGACGCAGAAATTGCGCGATGAA
CGAAGCCCTAGAAAAACGCCCACTGAAAATTGAAACCAGGAATTTATTGA
ATATTTCACTGATGAAGTATCAAACTTTTTGTTTTTTGTAATTATTATAA
ATTCATAATTTTTAAATACTATTTTTTGAAAGTCAATGGACAATTAAAGT
GAATTTAAGCTGATTGGGTGGATATGGGGCGGGCGGGCGTTTTGCACGTT
CCGAGATCAGAAATTAAACGAGAGTAAAAAACGGGGGCGTCTTAGTAATA
GTAATTCATTATTTTATTTTTTTTTCGCGAATGAAAAATAAATTTTAGAT
TTTTGAATTAAGGATATAATTNATCAAATTTTAGCAAATTCATGAAACTC
ATGCCAGCATTAAATGTAAAACAATAAAGGGATCAGACAGGCTTCCCTAA
AATGAAATAAAAAAGGAAAAGCTAAAGAGTAAAATTCAAAACATACCAAC
GAATTCGGATATCAAGTTCTTCTCGCACTTGTCGCAATAAAGGAGGTAGA
ATTCTGAGTATCCTTGATTTCCCATATCCTCACATGCTACTTCAACGTCT
TTGCTATCAAAGTCCTCACACAAGTCCAGTGCCTCTGATACCTCACTAGG
TATTGCAACTTTTATTTTTACTTTCGGATCTGTTAGTAGTTTCTTCATTT
CATTTTTCATACCCCAAGGTATTATCATTTTTCTAGTGAATGATCTGGTT
TTATATTTCCAGTGTTGCTTTAAGTGGGTATGTTCAACTTTCACACATAC
TTTATATGACGCCATTTTCCGGCTGGCTGATTTTTTTGGAAGTATTTTAA
TCGTTTCGCTGTCTTTTCTCCTCTGACCCCATCAAAGCCATTCGTGGTTC
CTCTCTTAGACATACTGGACATTTATCAAATATTTTTGTTACATATCTTA
ATTACTACTAACATTTCTGAAAAAAAATAAAGAGTGTTAAATTATCATTC
ATAATGCGAAAATTTTTTTCTGTAAAAGATTTTTATTTTTGTTTACATTT
TGAAATCACAATGATGATTCGAAATCACAATGATGATTCGAATTTCAATG
CAACATCTTCATTTGAATCATCCAACAACGATAGCTGTGTGCAGCGTATT
GTGCTAGCAAATGCAATGCAATGATTTCATTTGAATAAATTCATCTTTGT
TAAAGAAAGTTTTTGCAAACACACAAATTTTGAAAAAATGTACTCAATCA
GGATTTAGCCCCCAGTTCATTATGTAAAAAATTAGGTCCCCCCTAGCTCA
GTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCCCCC
CCCCCCCCCTGCGAGCAGGGGGGGTGAAGCCATGTGTTTACCTACGGTTT
TTTTACGGAGGAGAGTGATTTTTCTGTGGTCGCTAAAATCAAAACAATGG
AAAATTGGATTGACGTGTGCGCAGTCGACACTCCTAAACGGTGTATTGTC
TTGGAAATTCATACATTCTTCTCTTGCCTTAGAAATTTCGAAATTTGGTG
AAAACTTTTACCCTCGGAAATCCAGGCTCGTCCGCCCCCGTTACAGACAA
ATTCTGGAATGGCCCTTTGATTGAGCTGTCAAAACTTTTGAGTAAACCCC
AATTAGCCATATTCTCTTCTCGTGTCTGAAAGGAAATCACTCATTTTGAT
GATGGAGGTCGTCAAATTATTGGTAATAGCTCCTGAAATAATACTGTCAA
CTGCTCTAACTTGGAACGATTGGTCGAAAAATCGAAAAATGGGACTATCG
CATATATGGTCTGTATTTTCACTTACTGTAAAATCGAAGGAAAAATCGTG
TATTTTTTAATATGCCGTTCCTTAACTCAAATCAAATGACTTTGGAGGTC
TGGTGAAATGGTGGCCGAATTGCCGTCCCATGTTTTGTCAGATAGTCCCA
AGTTGGAGCAGTTGACGGTGATAGGTTTTGCCATGAAATTTTCTGTACCA
TAAATTCCTAACTTTTATTTATCTTCAAAATAAATAAAAAATTTGACACC
TAAAAATTTTCACACCTTGAGCATGATGACATTTCTGACAGTAAGGTGTC
ACAAAAATTAATTTTTAATGTCAAATATATCGTTTAAACCGTAATTTATT
GAATATTCAGGATAAAATAATCATTTTAAACTCAGGCAACTTTTTTCTAA
AGCCTTGCTATTTATAAGAACAAAGAAAATTTTTGGTTTTTGCTCACTTT
GGGCACGATGAGTGATGTCATCAAAAAAAAATTTTGTCAAAAGTTACTTT
ATGTGGCAAGGATCTTGTGTGCCAAAATTCATCCAAAAAGACCCACTAGA
TCAAAAGTTAAGGGGTGGTACACGAAAAGCCCCCCCCCTAGTTCTGAAAC
CGCCCCTGAAAGCCTAGTATGAATAGGGTTAAGAATTTCAATATATATGT
AAGCCCCCCCTTACATAATAATATTGTAAATTATTTTCAAGCACTGTTAT
GAAATTTGGTCTTAATGAAAGGAAGTTCTGTTAGAGTAGTCAAAAAGGAG
TCAAAAAGAACAAAAAAGTTTATTATTTTGCTTTCTTTCTAAAAATATTT
CACATATATATTTGTTAGCTATTTTTGTCCAAAATCCTTGGGGGGGTAGG
CATTTTTAAAGGTTGGGGAATGCGAAGAAGGGGGTTCAGACCCCTTTCTG
CACTATGGAAAAAGATTGAGACCATTCCACTGTTGTCAAGCGTTTTGAAC
CAAATTATCGCACTAAAGACATTGAATAGGACGCCTTTTTTGACGTAAAA
TAAACAGAAGAATGAAAAATTTGACAAAATGATTTTTTCTTCAAAATTAC
CATATATTGCCTAAATTCTGATTCTGACAAAAGTACAGTCTAGAAATTTT
AGAAAAATAAAATTTACCTCAACATACAAAGTTCTAAAATTATATAGTAC
CTACAGTTAAGAAAACCATCCAGGATCCTGCCATTCTATAAGCCAGCAAA
AACTAAATGGCACTTGTAAACTTTTAAGTTTCTTACCATTTTCCATAGAA
AACAACCAAAAACATTGCTACCTCCCAAAGCCGGAGACCAAAACAAATTA
TCTTCTAAGATTATGGCGCCCTTTTGGATCTATTGTTAATGCCATCTAAA
ATGGTGGAAAGAGTTGATGAAAAACAAAGGCGTCCTCTGCTTCGAGGGTG
GTTACGCCAAAACGCCCAATATGATTTTCCAACAGAAGCAGACAGAAGGC
GAGTTAGTTGCCGTGCGAGTTACGTCATGCATTCCAGCGCAGCGCACAAC
GAAGTGTGTTTCCATTAATATCATTAATTATAAGAATATCTAATGTGCTT
ACCTTCAGTAAGCTTTGAGTGCTTCATTGAAAATGAAGAAGGTAAGAAGA
TGAAAAATGCGCTGGATAATTTTCATTGTAACGGTTTGGTCAATCATCGC
TGAAAATTTGAAAAAGTTTTTCCGACGCAAAAATACCTAGATACCTACCC
TAGGATTGGTGGATTTACCACGCTTACCAGACACTGCTAACCCTGCGCTC
GTGACACGACAGAGCTATTGGTGTATATACAAGGATACTCAAACAACACG
GGAGGACATAGATCTTCGCAGGTGTTGAACCTTTGAGTATCGTCACCACA
CCGCATGCAATGCCTGACATACTCCCCCATACTCTTTTATCAGAGTGATG
GTACCCAGTTACCCTCACAAGGCATGGGTTGACCCGGGCAAAAGGTACAT
TCACTTGCCAAGTGAATCATAGCATTGAGTGAGAATCGAACCCTGACCTC
CCAGACGGGAATCAAGGTTGATAACCACTACACTACTACACGTATCAAAA
AGGAAGCGCTAATAGTGAAAGTTCATTTGTCATGGTCTTTGTTGCAGCAA
TGCCACCTCATTTGTGTTGTTTAAAAGCTTAGATTTTGGACTTGAAAATG
GTGCTCTCTGTACTCTCTGTGGTGTGGATAGTGGATAGAAAATTATGGAA
AACCCTGCAAAAATTCTCATCAGTTAGTCACACTAGGAAATCTAGCTTTC
AGAAAAAACAACATCAGTCATCTACGGATGTATTTGCAACAACAAGGATG
AGAGTTACCTGAATCAAGTTTGCAAGACAATTAATTAAAACTTGAAAGTT
TGAAACAAAATAAAACGTGCAGCAGCCAAAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAATTCCCGAGACAGCGCTTCGATT
TTTAAGGCCTAGTTTATACGCTAAAGTAAAAACAATTCCGCACATGTAAA
TGGGTCATTGTTTGAGGTCCGGCAAAATTTCCGGGAAATAGCCTATCCGG
CGGTGCGCGGATCCAGGTGGGTCNTGACATCAGCAAAACTTGTTTTTTGA
ATAACTCTAGTTTAATTTATGCTAAGAGCATGAAAATTGGACCAAAACTG
AAAAACATTTAGAGGAGTTGGCTGGTGAACATTTTGGCTAAAAGAATAAT
TTACGATAAAGCCACTTCCATAAAATAAAATGTCAATACCCTTCTTTGAT
GTATAAGTTGACATGTTTTCATGGTTGCTAGCAGTGCCAAAAAATCACAG
TATATTATTTAAAAATGCCTTAATTCTCCCAAGAAGTAAAATAGGAGGGA
CTATTTCCTTGTCCTGTTGACCCCTCTGGTAGATTCTCTGACAAATTCCT
GCCAGCTTGGCAAAGTTTGTGTGTTTCGATTTCAAGGAACCATTGATTGC
TTTTGACTGAGTTTCAATTGCATTTGATTATATTTCCATGTTCAATTTAT
GTTAAATGGGGCTTGTGAGTTCATGTACTCCTTTATTCTTATTACTTATT
ATTATTTATTAACACTTGTTCATAGTCAACATAGATTAATCATGAGAAAC
ATTAAATTTTAAATATCAACAGCCATACAATGGCCATCAGCAGCGTGGAG
TGTTTTAGATAAGAAGGGCAATTCTTCCTCTTTTTTGGCATTATGTTTTT
CAACAGTGAAATGCTGAATCATCAAAAAAGTCATCATAGCAAGCAGAGAG
CCCCCTTAAAATGGTATCTCCCTCTTTTAGCTCAACTCCTTTATAAAAAT
AAAAATCATAAAAAGTGTTTTTTCAACGAATTTCAGTTTTTAGCCAATAT
CTTGAAATTGGCTTAATTTAAATTTTTGACCCAGCACTTTCCATAACCAT
CTCTTTTATACGCTTCTTTTGAGCTCGATCGAGAGTTAAGTAACAATGGG
AAGCGATGGGGAAATAGGGATATAGGTTATTGACTTGCCTTAACTCACCT
GAGAAGCTTGGGAAAGTTTTCAATGGAGTATTGAAGGGGCCGGTGAGGTC
ATTTCTAGAGAACAGAAAGTCAACTTTGGAAGTTCCTTGTTGACAAAAAG
TGGTTGTACNGCGGCGCATTTTTTTGCTTGAGAGTCAAGTAAACGATATA
GCGCACTCGCAGCATTAATCTTTGATACGCATTTTGGCGGGAAGCTAGTG
TGACTAACTGCTCATTAGTGGCTGAATGAAAAGTTCAGACAAGCAGACAA
GTTAGTTGGACCAGCATAAACTAAGATATGATTAATAAGATACTCAGGCT
AAGAGCACATCCAAACATGTCAACTTATGCATCAAAAGAAGCATTTTGAC
ATGTAGATTGGGGAAATGGCTGTATCGCAATTATTTTCTCCAGCCAACAA
AAGATATCAAGGAAAAATTGAAAAATGCTGACATCAGCAAAACTTGTTTT
TTGAATAACTCTAGTTTAATTTATGCTAAGAGCATGAAAATTGGACCAAA
ACTGAAAAACATTTAGAGGAGTTGGCTGGTGAACATTTTGGCTAAAAGAA
TAATTACGATAAAGCCACTTCCATAAAATAAAATGTCAATACCCTTCTTT
GATGTATAAGTTGACATGTTTTCATGGTTGCTAGCAGTGCCAAAAAATCA
CAGTATATTATTTAAAAATGCCTTAATTCTCCCAAGAAGTAAAATAGGAG
GGACTATTTCCTTGTCCTGTTGACCCCTCTGGTAGATTCTCTGACAAATT
CCTGCCAGCTTGGCAAAGTTTGTGTGTTTCGATTTCAAGGAACCATTGAT
TGCTTTTGACTGAGTTTCAATTGCATTTGATTATATTTCCATGTTCAATT
TATGTTAAATGGGGCTTGTGAGTTCATGTACTCCTTTATTCTTATTACTT
ATTATTATTTATTAACACTTGTTCATAGTCAACATAGATTAATCATGAGA
AACATTAAATTTTAAATATCAACAGCCATACAATGGCCATCAGCAGCGTG
GAGTGTTTTAGATAAGAAGGGCAATTCTTCCTCTTTTTTGGCATTATGTT
TTTCAACAGTGAAATGCTGAATCATCAAAAAAGTCATCATAGCAAGCAGA
GAGCCCCCTTAAAATGGTATCTCCCTCTTTTAGCTCAACTCCTTTATAAA
AATAAAAATCATAAAAAGTGTTTTTTCAACGAATTTCAGTTTTTAGCCAA
TATCTTGAAATTGGCTTAATTTAAATTTTTGACCCAGCACTTTCCATAAC
CATCTCTTTTATACGCTTCTTTTGAGCTCGATCGAGAGTTAAGTAACAAT
GGGAAGCGATGGGGAAATAGGGATATAGGTTATTGACTTGCCTTAACTCA
CCTGAGAAGCTTGGGAAAGTTTTCAATGGAGTATTGAAGGGGCCGGTGAG
GTCATTTCTAGAGAACAGAAAGTCAACTTTGGAAGTTCCTTGTTGACAAA
AAGTGGTTGTACCTTCTGATAGAGCTTGAAGCGTACATCTCCAAAATGGG
AACATTTGCTTCATTTGCTTGACTAAATCCCCCGGAAATGGATGATAAGT
CTTGTATAGTTTATAGGATTTCCATGGCAAGATCTTGAGATATTTGAGTT
TGATATTTTGCTGACTCAGTGTTTAAAGGTTTTCTACTGAATCAGCAGAA
TATCTCGTTTGATCTAGCCATTAAAAATGCTTTAATCTATACCTCTAATC
GATAATATTCTTCCAAAGGATCATTTTAGAACAATAGCTGTTTTCAGAAT
TTACAAATTCATTTTTTAAAACATCAGGGTTACATGTTTATTTTTAAAAC
AAGAAAGTTTAGGCTGGACTTAAAAATTGTTGGTTTGCCGTCACNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTCAAG
CATAAGAATCGTAAATTCCCTGCTAGCACTTCTGTTTTTTATTCAAAATT
ACCTAAATGTAAACAAACTGTTAACCCTTCCATGGACGAAAAAATTCCGA
CCGACCGACCCTCCTCCAAAATCTAGGGTCGGATAGAATCTAGANTAACT
CACCTGAGAAGCTTGGGAAAGTTTTCAATGGAGTATTGAAGGGGCCGGTG
AGGTCATTTCTAGAGAACAGAAAGTCAACTTTGGAAGTTCCTTGTTGACA
AAAAGTGGTTGTACCTTCTGATAGAGCTTGAAGCGTACATCTCCAAAATG
GGAACATTTGCTTCATTTGCTTGACTAAATCCCCCGGAAATGGATGATAA
GTCTTGTATAGTTTATAGGATTTCCATGGCAAGATCTTGAGATATTTGAG
TTTGATATTTTGCTGACTCAGTGTTTAAAGGTTCTTTTCTACTGAATCAG
CAGAATATCTCGTTTGATCTAGCCATTAAAAATGCTTATACCTCTAATCG
ATAATATTCTTCCAAAGGATCATTTTAGAACAATAGCTGTTTTCAGAATT
TACAAATTCATTTTTTAAAACATCAGGGTTACATGTTTATTTTTAAAACA
AGAAAGTTTAGGCTGGACTTAAAAATTGTTGGTTTGCCGTCACCCGACCG
AACCTATCTCGAAACCTGCCAACCCAAAAAATTTTATTGCAATTTTAAAG
AAGATTTTTTTTCCTTCAAAAACTTCAAACAATAAAAAATCAAAACTTGC
ATCTTGTTTGTCTCAAGCATAAGAATCGTAAATTCCCTGCTAGCACTTCT
GTTTTTTATTCAAAATTACCTAAATGTAAACAAACTGTTAACCCTTCCAT
GGACGAAAAAATTCCGACCGACCGACCCTCCTCCAAAATCTAGGGTCGGG
TGACAGCAAACCAACAATTTTTTAAGCCCAGCCTTAGGTATGATTTATTT
TTGACATGGATTTATAACAGAGAAGACCATTTTGATATTTGGTATTCATC
CATTATTATTAAACTTTGTTCTAGATATTCTTTTTATGATGGACCTCCAT
TTGCAACTGGACTTCCACATTATGGTCATATTCTGGCAGGAACTATCAAA
GATATTGTTACAAGATATGCGCACCAGTCTGGTTTTCATGTTGAGAGAAG
ATTTGGCTGGGATACTCATGGCTTGCCAGTGGTATGTTTTCAAACTACTT
GCTAGATTGATTATTGGCCCAAATCGACAACCAAACTGTTTTAATATTGA
AGT

Coding sequence (CDS) from alignment at scaffold_124:208517..222919-

>TCONS_00047295 ID=TCONS_00047295|Name=TCONS_00047295|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_124:208517..222919- (Clytia hemisphaerica)
ATATTCTTTTTATGATGGACCTCCATTTGCAACTGGACTTCCACATTATG
GTCATATTCTGGCAGGAACTATCAAAGATATTGTTACAAGATATGCGCAC
CAGTCTGGTTTTCATGTTGAGAGAAGATTTGGCTGGGATACTCATGGCTT
GCCAGTGGTATGTTTTCAAACTACTTGCTAGATGAACTGTGCTGTAAATT
CATTGCGGAAGTTTACTTTTGGTCATAAATCATTTTTCACACGTGGAATA
TCCTCTTCATATGCATTACTTCAAAAGAATATGGCAAAGAACATAGGTGA
AAGTTACAATTTTCCTAAAGAAGAGGAGAATATCCTTGAACTATGGAAAG
ATATAGATGCCTTCCGGACTTCTCTAAAGTTATCCGAAGGAAAACCCAGA
TATTCTTTTTATGATGGACCTCCATTTGCAACTGGACTTCCACATTATGG
TCATATTCTGGCAGGAACTATCAAAGATATTGTTACAAGATATGCGCACC
AGTCTGGTTTTCATGTTGAGAGAAGATTTGGCTGGGATACTCATGGCTTG
CCAGTGGTATGTTTTCAAACTACTTGCTAGATGAACTGTGCTGTAAATTC
ATTGCGGAAGTTTACTTTTGGTCATAAATCATTTTTCACACGTGGAATAT
CCTCTTCATATGCATTACTTCAAAAGAATATGGCAAAGAACATAGGTGAA
AGTTACAATTTTCCTAAAGAAGAGGAGAATATCCTTGAACTATGGAAAGA
TATAGATGCCTTCCGGACTTCTCTAAAGTTATCCGAAGGAAAACCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030126XLOC_030126Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047295-proteinTCONS_00047295-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047295-exon-scaffold_124-1575043694:222628..222919TCONS_00047295-exon-scaffold_124-1575043694:222628..222919Clytia hemisphaericaexon
TCONS_00047295-exon-scaffold_124-1575043694:208517..208745TCONS_00047295-exon-scaffold_124-1575043694:208517..208745Clytia hemisphaericaexon
TCONS_00047295-exon-scaffold_124-1510915933:222628..222919TCONS_00047295-exon-scaffold_124-1510915933:222628..222919Clytia hemisphaericaexon
TCONS_00047295-exon-scaffold_124-1510915933:208517..208745TCONS_00047295-exon-scaffold_124-1510915933:208517..208745Clytia hemisphaericaexon
TCONS_00047295-exon-scaffold_124-1491911889:222628..222919TCONS_00047295-exon-scaffold_124-1491911889:222628..222919Clytia hemisphaericaexon
TCONS_00047295-exon-scaffold_124-1491911889:208517..208745TCONS_00047295-exon-scaffold_124-1491911889:208517..208745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_124supercontigscaffold_124:208517..222919 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.9059	28.9412	14.9349	13.4778	52.1374	46.4102	62.1321	69.3901	41.2034	65.7547	55.874	41.8791	47.1146	43.3528	43.8421	61.0463	44.9859	52.2336	16.8019	25.0448	37.0504	39.415	43.5464	42.3163	52.0087	51.4286	36.4853	25.2931	42.659	44.2343
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold
IPR002300aa-tRNA-synth_Ia
IPR001412aa-tRNA-synth_I_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006418 tRNA aminoacylation for protein translation
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
Blast
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BLAST of TCONS_00047295 vs. Swiss-Prot (Human)
Match: SYIC (Isoleucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.825e-44
Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = 3 
Query:  174 MAKNIGESYNFPKEEENILELWKDIDAFRTSLKLSEGKPRYSFYDGPPFATGLPHYGHILAGTIKDIVTRYAHQSGFHVERRFGWDTHGLPV 449
            M + + E+ NFP EEE ILE W + + F+  LK S+ KP+++FYDGPPFATGLPHYGHILAGTIKDIVTRYAHQSGFHV+RRFGWD HGLPV
Sbjct:    1 MLQQVPENINFPAEEEKILEFWTEFNCFQECLKQSKHKPKFTFYDGPPFATGLPHYGHILAGTIKDIVTRYAHQSGFHVDRRFGWDCHGLPV 92
The following BLAST results are available for this feature:
BLAST of TCONS_00047295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYIC4.825e-4471.74Isoleucine--tRNA ligase, cytoplasmic OS=Homo sapie... [more]
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