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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047292 ID=TCONS_00047292|Name=TCONS_00047292|organism=Clytia hemisphaerica|type=transcript|length=3076bpRun BLAST on NCBI protein sequence of TCONS_00047292-protein >TCONS_00047292-protein ID=TCONS_00047292-protein|Name=TCONS_00047292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp MQCNIRSIFHGILSNLVQILEKWKYSNKTTLTPSPNCSPSLIELNHSASXRun BLAST on NCBI transcript from alignment at scaffold_124:138679..146405- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047292 ID=TCONS_00047292|Name=TCONS_00047292|organism=Clytia hemisphaerica|type=transcript|length=7727bp|location=Sequence derived from alignment at scaffold_124:138679..146405- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_124:138679..146405- >TCONS_00047292 ID=TCONS_00047292|Name=TCONS_00047292|organism=Clytia hemisphaerica|type=CDS|length=8604bp|location=Sequence derived from alignment at scaffold_124:138679..146405- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00047292 vs. Swiss-Prot (Human)
Match: HSP74 (Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4) HSP 1 Score: 435.647 bits (1119), Expect = 1.461e-136 Identity = 213/406 (52.46%), Postives = 281/406 (69.21%), Query Frame = 3
Query: 6 RLAGVGAKNQTTMNLKNTVTQIKRLIGHKYDEAYSQAELPNLPYSTTKLPNGDIGIQVRYRNEEKVFTPVQILAMLLSHLRDTTSAALQTKILDCVISVPAYFTDIQRRAVLHSSKIVGLNCLKLMNETTAVGLGYGLFKQDLPAPEEKPRNVAFVDMGHASLQVSIAEFNKGKMKVLSTASDSCLGGRDFDNKLANHFNEEFKVKYKIDAKSNPKAWSRLLTAVEKLKKQLSANTVELPFFIECFMDDKDVSSKIDRETFEKMSQDLLERLQAPMLTALNDAKLKPEDVESVEIVGGTTRTPALKVTIEQVFGKSPRTTLNQDEAVARGCAVQCAMLSHTVRVRDFEILDAVQYPINISWD-PVKPGADPGEMEVFKQNHAYPFTKLLTFPHRTEPFCFKXHQTA 1220
R G AK+Q N KNTV KR G + + + +AE NL Y +LP G GI+V Y EE+ FT Q+ AMLLS L++T + L+ ++DCV+SVP ++TD +RR+V+ +++I GLNCL+LMNETTAV L YG++KQDLPA EEKPRNV FVDMGH++ QVS+ FN+GK+KVL+TA D+ LGGR FD L NHF EEF KYK+D KS +A RL EKLKK +SAN +LP IECFM+D DVS ++R F +M DLL R++ P+ + L KLK ED+ +VEIVGG TR PA+K I + FGK TTLN DEAV RGCA+QCA+LS +VR+F I D V YPI++ W+ P + G+ + EVF +NHA PF+K+LTF +R EPF + + ++
Sbjct: 46 RSIGAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVEAEKSNLAYDIVQLPTGLTGIKVTYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNRGKLKVLATAFDTTLGGRKFDEVLVNHFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLSIECFMNDVDVSGTMNRGKFLEMCNDLLARVEPPLRSVLEQTKLKKEDIYAVEIVGGATRIPAVKEKISKFFGKELSTTLNADEAVTRGCALQCAILSPAFKVREFSITDVVPYPISLRWNSPAEEGS--SDCEVFSKNHAAPFSKVLTF-YRKEPFTLEAYYSS 448 HSP 2 Score: 179.104 bits (453), Expect = 4.014e-46 Identity = 141/377 (37.40%), Postives = 207/377 (54.91%), Query Frame = 1
Query: 1189 NHSASXFTKLLTFPHRTEPFCFKAFYRNDVAIPHLDREIGDFIVNAGAATDSSVEKIKVKVKLRVDKNGCFSVCSATMVETLPQSEAPIEEPMETDTSTPVVNGDNKENNDKPAESAETPSKTEEEQKGQDQAKKSPEEATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDPIQTGLTAE---DIANL-VSIEQELQFHARVEKERADAKNNLEEYIYAMRDKLSGDLENYVEEGQRDEFSVQLEDGESWLYGDGEDLQKQAYIDKLEGLKKISQPMEDRCVAHQAIPGAIDNFGKAMTHYKKILEQYENKDEKYVHIXXXXXXXXXXXXXXXFNWFNEKLNEMGKCPKTKNPPVYPSQIETEKKLMQTFCDPIVN 2307
NH+A F+K+LTF +R EPF +A+Y + +P+ D I F V S KVKVK+RV+ +G FSV SA++VE E EEPMETD N + +K E P E++Q+ + K EE T + K + +P K K+ ST PI+ L + ++ NL + E ++ ++EKER DAKN +EEY+Y MRDKLSG+ E +V E R+ F+++LED E+WLY DGED KQ Y+DKL LK + QP++ R + P + GK + Y KI+ ++NK+++Y H++A +M KV+ E W N KLN K T +P V +IE + K + + C PI++
Sbjct: 423 NHAAP-FSKVLTF-YRKEPFTLEAYYSSPQDLPYPDPAIAQFSVQK-VTPQSDGSSSKVKVKVRVNVHGIFSVSSASLVEVHKSEEN--EEPMETD--------QNAKEEEKMQVDQEEPHVEEQQQQTPAENKAESEEMETSQAGSKDKKMDQPPQAKKAKVKTSTVDL--PIENQLLWQIDREMLNLYIENEGKMIMQDKLEKERNDAKNAVEEYVYEMRDKLSGEYEKFVSEDDRNSFTLKLEDTENWLYEDGEDQPKQVYVDKLAELKNLGQPIKIRFQESEERPKLFEELGKQIQQYMKIISSFKNKEDQYDHLDAADMTKVEKSTNEAMEWMNNKLNLQNKQSLTMDPVVKSKEIEAKIKELTSTCSPIIS 784 The following BLAST results are available for this feature:
BLAST of TCONS_00047292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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