TCONS_00047271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047271
Unique NameTCONS_00047271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047271 ID=TCONS_00047271|Name=TCONS_00047271|organism=Clytia hemisphaerica|type=transcript|length=603bp
AGTCAGAGCTGGCAACAACCggagttttctttttctttataaatacACCA
AGTGTAAACATTGAGGTAATAAACCCGAAAACTGATAAGGCGACTGTCGC
TTGAAATAAAACCATATTTATGATTTCGGGATAGACATCTCGATAAGGGT
CAATACATTCAGTGCGGTATCCATTATCGATGCTTAACTTCCCACTACAT
GGTATACATCCATCATCACCAAAAGTTGACTTGTAGTGATTGATTGGACA
TAAAACACATTGATATCCATAACCTCCGGCTACTTCTCCATAAATCTTGT
ATTTTCCTGGTCCACAATTTACAACAGGGCATTTATTGCCTGGTGATATA
ATATCTTCAATTGAAACATCAACAAAGTGACCGTCATCAGTTCTGTTAAG
CCTAAAAACGCCATTAGAATCTGATCTATCCCATTTGTAGTTGTCGGAAA
CCTGTTTAAAAAGCCCTGATGCGTATAAATTCATTTGAATCGATTCTGAT
TTAAATCTAATAAGTAGATTTAAAATACGGTAAAAGGCAAAATCATTTAG
ATAACTGAGCCAAATAGTTTCGTAATATATATAGTCATCTGAATTCATTA
GCC
Run BLAST on NCBI

protein sequence of TCONS_00047271-protein

>TCONS_00047271-protein ID=TCONS_00047271-protein|Name=TCONS_00047271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
LMNSDDYIYYETIWLSYLNDFAFYRILNLLIRFKSESIQMNLYASGLFKQ
VSDNYKWDRSDSNGVFRLNRTDDGHFVDVSIEDIISPGNKCPVVNCGPGK
YKIYGEVAGGYGYQCVLCPINHYKSTFGDDGCIPCSGKLSIDNGYRTECI
DPYRDVYPEIINMVLFQATVALSVFGFITSMFTLGVFIKKKKTPVVASSD
Run BLAST on NCBI

transcript from alignment at scaffold_123:455611..456213

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047271 ID=TCONS_00047271|Name=TCONS_00047271|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at scaffold_123:455611..456213 (Clytia hemisphaerica)
GGCTAATGAATTCAGATGACTATATATATTACGAAACTATTTGGCTCAGT
TATCTAAATGATTTTGCCTTTTACCGTATTTTAAATCTACTTATTAGATT
TAAATCAGAATCGATTCAAATGAATTTATACGCATCAGGGCTTTTTAAAC
AGGTTTCCGACAACTACAAATGGGATAGATCAGATTCTAATGGCGTTTTT
AGGCTTAACAGAACTGATGACGGTCACTTTGTTGATGTTTCAATTGAAGA
TATTATATCACCAGGCAATAAATGCCCTGTTGTAAATTGTGGACCAGGAA
AATACAAGATTTATGGAGAAGTAGCCGGAGGTTATGGATATCAATGTGTT
TTATGTCCAATCAATCACTACAAGTCAACTTTTGGTGATGATGGATGTAT
ACCATGTAGTGGGAAGTTAAGCATCGATAATGGATACCGCACTGAATGTA
TTGACCCTTATCGAGATGTCTATCCCGAAATCATAAATATGGTTTTATTT
CAAGCGACAGTCGCCTTATCAGTTTTCGGGTTTATTACCTCAATGTTTAC
ACTTGGTgtatttataaagaaaaagaaaactccGGTTGTTGCCAGCTCTG
ACT

Coding sequence (CDS) from alignment at scaffold_123:455611..456213

>TCONS_00047271 ID=TCONS_00047271|Name=TCONS_00047271|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_123:455611..456213 (Clytia hemisphaerica)
CTAATGAATTCAGATGACTATATATATTACGAAACTATTTGGCTCAGTTA
TCTAAATGATTTTGCCTTTTACCGTATTTTAAATCTACTTATTAGATTTA
AATCAGAATCGATTCAAATGAATTTATACGCATCAGGGCTTTTTAAACAG
GTTTCCGACAACTACAAATGGGATAGATCAGATTCTAATGGCGTTTTTAG
GCTTAACAGAACTGATGACGGTCACTTTGTTGATGTTTCAATTGAAGATA
TTATATCACCAGGCAATAAATGCCCTGTTGTAAATTGTGGACCAGGAAAA
TACAAGATTTATGGAGAAGTAGCCGGAGGTTATGGATATCAATGTGTTTT
ATGTCCAATCAATCACTACAAGTCAACTTTTGGTGATGATGGATGTATAC
CATGTAGTGGGAAGTTAAGCATCGATAATGGATACCGCACTGAATGTATT
GACCCTTATCGAGATGTCTATCCCGAAATCATAAATATGGTTTTATTTCA
AGCGACAGTCGCCTTATCAGTTTTCGGGTTTATTACCTCAATGTTTACAC
TTGGTgtatttataaagaaaaagaaaactccGGTTGTTGCCAGCTCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030112XLOC_030112Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047271-proteinTCONS_00047271-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047271-exon-scaffold_123-1491911889:455611..456213TCONS_00047271-exon-scaffold_123-1491911889:455611..456213Clytia hemisphaericaexon
TCONS_00047271-exon-scaffold_123-1510915933:455611..456213TCONS_00047271-exon-scaffold_123-1510915933:455611..456213Clytia hemisphaericaexon
TCONS_00047271-exon-scaffold_123-1575043694:455611..456213TCONS_00047271-exon-scaffold_123-1575043694:455611..456213Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:455611..456213 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.121431	0.0959562	0.115767	0	0	0.0939887	0	0	0	0	0	0	0	0.207853	0	0.300492	0.609425	0.382186	0.103244	0	0	1.29423	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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