TCONS_00047270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047270
Unique NameTCONS_00047270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047270 ID=TCONS_00047270|Name=TCONS_00047270|organism=Clytia hemisphaerica|type=transcript|length=641bp
CCCCGTAAGATTTCAACTGAAAAAAATAGTAGTCATGTACAAGAATTCTC
ATCCCAGGAATATTGTTTTGAATACCTTTTAAAGACCTTAAAGCTAAATG
TGAAATAACATTATCTCCAAATAATATGATGTTTGGATTTTTATGGCctt
gaaaaatagaaatattgaAGATATTGACCCCTACAATATCATCTATTTCG
ATATGAAGGAATCGTACACATTTCTTTTGGCTGGCGAAAAAGTTGATACT
TTCCTTGTAGTATGCCCGATACAAGttcctttgtatcttttcaaatttgt
aaGTCACTAAAACTAAGAATATCTCTTCTAACTCCAATGTTTCTATAACC
TCTGATAGATAATTTGTATATTCGGAAAACATATCTGATGAAAATGATCC
TTGCGGAAGATCATTAAATCCAATATCATGAACATATTTCTTTGTGAATG
AAAATGCGTTTTTGACAAATGATGTCATTTGAGGTGATAAAAAGGTATAA
ATGACAAATACTAAAGATTCATCCAGATGCCGAACAGGAATGAAATAGTC
TACTGACTTTGTTGAGTTCACCGATAAGATTAAATCAATAACGGTTGATG
TTAGCTGGTCAAAATCATTACATACATCAATCGGTATATAT
Run BLAST on NCBI

protein sequence of TCONS_00047270-protein

>TCONS_00047270-protein ID=TCONS_00047270-protein|Name=TCONS_00047270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
YIPIDVCNDFDQLTSTVIDLILSVNSTKSVDYFIPVRHLDESLVFVIYTF
LSPQMTSFVKNAFSFTKKYVHDIGFNDLPQGSFSSDMFSEYTNYLSEVIE
TLELEEIFLVLVTYKFEKIQRNLYRAYYKESINFFASQKKCVRFLHIEID
DIVGVNIFNISIFQGHKNPNIILFGDNVISHLALRSLKGIQNNIPGMRIL
VHDYYFFQLKSYG
Run BLAST on NCBI

transcript from alignment at scaffold_123:454874..455514

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047270 ID=TCONS_00047270|Name=TCONS_00047270|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at scaffold_123:454874..455514 (Clytia hemisphaerica)
ATATATACCGATTGATGTATGTAATGATTTTGACCAGCTAACATCAACCG
TTATTGATTTAATCTTATCGGTGAACTCAACAAAGTCAGTAGACTATTTC
ATTCCTGTTCGGCATCTGGATGAATCTTTAGTATTTGTCATTTATACCTT
TTTATCACCTCAAATGACATCATTTGTCAAAAACGCATTTTCATTCACAA
AGAAATATGTTCATGATATTGGATTTAATGATCTTCCGCAAGGATCATTT
TCATCAGATATGTTTTCCGAATATACAAATTATCTATCAGAGGTTATAGA
AACATTGGAGTTAGAAGAGATATTCTTAGTTTTAGTGACttacaaatttg
aaaagatacaaaggaaCTTGTATCGGGCATACTACAAGGAAAGTATCAAC
TTTTTCGCCAGCCAAAAGAAATGTGTACGATTCCTTCATATCGAAATAGA
TGATATTGTAGGGGTCAATATCTtcaatatttctatttttcaagGCCATA
AAAATCCAAACATCATATTATTTGGAGATAATGTTATTTCACATTTAGCT
TTAAGGTCTTTAAAAGGTATTCAAAACAATATTCCTGGGATGAGAATTCT
TGTACATGACTACTATTTTTTTCAGTTGAAATCTTACGGGG

Coding sequence (CDS) from alignment at scaffold_123:454874..455514

>TCONS_00047270 ID=TCONS_00047270|Name=TCONS_00047270|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_123:454874..455514 (Clytia hemisphaerica)
TATATACCGATTGATGTATGTAATGATTTTGACCAGCTAACATCAACCGT
TATTGATTTAATCTTATCGGTGAACTCAACAAAGTCAGTAGACTATTTCA
TTCCTGTTCGGCATCTGGATGAATCTTTAGTATTTGTCATTTATACCTTT
TTATCACCTCAAATGACATCATTTGTCAAAAACGCATTTTCATTCACAAA
GAAATATGTTCATGATATTGGATTTAATGATCTTCCGCAAGGATCATTTT
CATCAGATATGTTTTCCGAATATACAAATTATCTATCAGAGGTTATAGAA
ACATTGGAGTTAGAAGAGATATTCTTAGTTTTAGTGACttacaaatttga
aaagatacaaaggaaCTTGTATCGGGCATACTACAAGGAAAGTATCAACT
TTTTCGCCAGCCAAAAGAAATGTGTACGATTCCTTCATATCGAAATAGAT
GATATTGTAGGGGTCAATATCTtcaatatttctatttttcaagGCCATAA
AAATCCAAACATCATATTATTTGGAGATAATGTTATTTCACATTTAGCTT
TAAGGTCTTTAAAAGGTATTCAAAACAATATTCCTGGGATGAGAATTCTT
GTACATGACTACTATTTTTTTCAGTTGAAATCTTACGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030111XLOC_030111Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047270-proteinTCONS_00047270-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047270-exon-scaffold_123-1491911889:454874..455514TCONS_00047270-exon-scaffold_123-1491911889:454874..455514Clytia hemisphaericaexon
TCONS_00047270-exon-scaffold_123-1510915933:454874..455514TCONS_00047270-exon-scaffold_123-1510915933:454874..455514Clytia hemisphaericaexon
TCONS_00047270-exon-scaffold_123-1575043694:454874..455514TCONS_00047270-exon-scaffold_123-1575043694:454874..455514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:454874..455514 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0821244	0	0	0	0	0.0875156	0	0	0.0692047	0	0	0	0	0	0	0	0	0	0	0	1.27044	0.813325	0.282487	0.342429	0.0881733	0.157385	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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