TCONS_00047268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047268
Unique NameTCONS_00047268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047268 ID=TCONS_00047268|Name=TCONS_00047268|organism=Clytia hemisphaerica|type=transcript|length=482bp
CCGAACAGTAGAACTGAAACAATAACAAAAGTAATTAAAGAGTAATTAAA
AAAGCTTTGAATTTGGGATCAAAATATTAACCGAATATTAAAACACCTAA
TCAATCCAAGAAGGAAATaaagatgataaaaatgaagaaacttCTATTGA
TTTACCACTTGTGGTTTGTTTTCGCACATGCACAGGAGATGAACGCAAAG
CTGAACTCATACAATCTGCAAGTCACATCCAATACTGATGGTTCAATGTT
CAAATTCATTAGCCCTCAAACTGACGTTCAAAACACGTTATTGAAGGAAC
CACCGAAGGTTCAAGTCAAGGATCTTAACTTACCCACAGCTTTGGTTATG
AAAGACTTAGCATTAACATTGACAGTAAACCCAAGTATGGATGTCGAAGG
TGATTTACCAGAGTATAAATATACACCAGCTAAAGAACATCCGAAAATTT
ATAATGTGGTGAAAGTGTTGCATACTCACCAN
Run BLAST on NCBI

protein sequence of TCONS_00047268-protein

>TCONS_00047268-protein ID=TCONS_00047268-protein|Name=TCONS_00047268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MIKMKKLLLIYHLWFVFAHAQEMNAKLNSYNLQVTSNTDGSMFKFISPQT
DVQNTLLKEPPKVQVKDLNLPTALVMKDLALTLTVNPSMDVEGDLPEYKY
TPAKEHPKIYNVVKVLHTHX
Run BLAST on NCBI

transcript from alignment at scaffold_123:424344..424825

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047268 ID=TCONS_00047268|Name=TCONS_00047268|organism=Clytia hemisphaerica|type=transcript|length=482bp|location=Sequence derived from alignment at scaffold_123:424344..424825 (Clytia hemisphaerica)
NTGGTGAGTATGCAACACTTTCACCACATTATAAATTTTCGGATGTTCTT
TAGCTGGTGTATATTTATACTCTGGTAAATCACCTTCGACATCCATACTT
GGGTTTACTGTCAATGTTAATGCTAAGTCTTTCATAACCAAAGCTGTGGG
TAAGTTAAGATCCTTGACTTGAACCTTCGGTGGTTCCTTCAATAACGTGT
TTTGAACGTCAGTTTGAGGGCTAATGAATTTGAACATTGAACCATCAGTA
TTGGATGTGACTTGCAGATTGTATGAGTTCAGCTTTGCGTTCATCTCCTG
TGCATGTGCGAAAACAAACCACAAGTGGTAAATCAATAGaagtttcttca
tttttatcatctttATTTCCTTCTTGGATTGATTAGGTGTTTTAATATTC
GGTTAATATTTTGATCCCAAATTCAAAGCTTTTTTAATTACTCTTTAATT
ACTTTTGTTATTGTTTCAGTTCTACTGTTCGG

Coding sequence (CDS) from alignment at scaffold_123:424344..424825

>TCONS_00047268 ID=TCONS_00047268|Name=TCONS_00047268|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_123:424344..424825 (Clytia hemisphaerica)
NTGGTGAGTATGCAACACTTTCACCACATTATAAATTTTCGGATGTTCTT
TAGCTGGTGTATATTTATACTCTGGTAAATCACCTTCGACATCCATACTT
GGGTTTACTGTCAATGTTAATGCTAAGTCTTTCATAACCAAAGCTGTGGG
TAAGTTAAGATCCTTGACTTGAACCTTCGGTGGTTCCTTCAATAACGTGT
TTTGAACGTCAGTTTGAGGGCTAATGAATTTGAACATTGAACCATCAGTA
TTGGATGTGACTTGCAGATTGTATGAGTTCAGCTTTGCGTTCATCTCCTG
TGCATGTGCGAAAACAAACCACAAGTGGTAAATCAATAGaagtttcttca
tttttatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030109XLOC_030109Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047268-exon-scaffold_123-1491911889:424344..424825TCONS_00047268-exon-scaffold_123-1491911889:424344..424825Clytia hemisphaericaexon
TCONS_00047268-exon-scaffold_123-1510915933:424344..424825TCONS_00047268-exon-scaffold_123-1510915933:424344..424825Clytia hemisphaericaexon
TCONS_00047268-exon-scaffold_123-1575043694:424344..424825TCONS_00047268-exon-scaffold_123-1575043694:424344..424825Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047268-proteinTCONS_00047268-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:424344..424825 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.175252	0	1.57387	4.4205	0.256254	0.271293	2.67199	1.21909	1.78162	0.227278	0.867661	2.74979	4.64162	1.6696	0	0	1.14349	0.756507	0	0.699893	1.53366	2.46235	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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