TCONS_00047261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047261
Unique NameTCONS_00047261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047261 ID=TCONS_00047261|Name=TCONS_00047261|organism=Clytia hemisphaerica|type=transcript|length=438bp
TTTATCAGTTCAATTGGTATTTCATCACATCCTGGGCTTTTGTttcgttt
cattttcttaacagCTTTGTTGATTTCGACTGACGTGAACGGTGCTAGCA
TAGGTGTTGGTGGTGCGATTGTTGGttgttcttgatttttgaagaaaatt
cctttgaagTATGTAGCTATTATATCACTTTGTTCCTTTGGGTCTGCTGT
TAGTCCATTTTCTCCTTTGATAAGAAGCTTTTCAGGTGGTTTTaggtttt
tgattttcttgacaGCTTGATACATCTTGTTGTTATCGTGGAAGTATGTT
CTGGTCactttttcgttttcttctAGATTCATGATGGTGTGTATTTCAGC
TAGTATGCGATTGCGAAATTGCTTGAGGAAAGTTTCTGCTTGTTTGGTGT
TACATGATTGTATTCGGTGTTGAATATTTCGTTGAAGT
Run BLAST on NCBI

protein sequence of TCONS_00047261-protein

>TCONS_00047261-protein ID=TCONS_00047261-protein|Name=TCONS_00047261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
LQRNIQHRIQSCNTKQAETFLKQFRNRILAEIHTIMNLEENEKVTRTYFH
DNNKMYQAVKKIKNLKPPEKLLIKGENGLTADPKEQSDIIATYFKGIFFK
NQEQPTIAPPTPMLAPFTSVEINKAVKKMKRNKSPGCDEIPIELI
Run BLAST on NCBI

transcript from alignment at scaffold_123:261700..262137

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047261 ID=TCONS_00047261|Name=TCONS_00047261|organism=Clytia hemisphaerica|type=transcript|length=438bp|location=Sequence derived from alignment at scaffold_123:261700..262137 (Clytia hemisphaerica)
ACTTCAACGAAATATTCAACACCGAATACAATCATGTAACACCAAACAAG
CAGAAACTTTCCTCAAGCAATTTCGCAATCGCATACTAGCTGAAATACAC
ACCATCATGAATCTagaagaaaacgaaaaagtGACCAGAACATACTTCCA
CGATAACAACAAGATGTATCAAGCtgtcaagaaaatcaaaaacctAAAAC
CACCTGAAAAGCTTCTTATCAAAGGAGAAAATGGACTAACAGCAGACCCA
AAGGAACAAAGTGATATAATAGCTACATActtcaaaggaattttcttcaa
aaatcaagaacaaCCAACAATCGCACCACCAACACCTATGCTAGCACCGT
TCACGTCAGTCGAAATCAACAAAGctgttaagaaaatgaaacgaaACAAA
AGCCCAGGATGTGATGAAATACCAATTGAACTGATAAA

Coding sequence (CDS) from alignment at scaffold_123:261700..262137

>TCONS_00047261 ID=TCONS_00047261|Name=TCONS_00047261|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_123:261700..262137 (Clytia hemisphaerica)
CTTCAACGAAATATTCAACACCGAATACAATCATGTAACACCAAACAAGC
AGAAACTTTCCTCAAGCAATTTCGCAATCGCATACTAGCTGAAATACACA
CCATCATGAATCTagaagaaaacgaaaaagtGACCAGAACATACTTCCAC
GATAACAACAAGATGTATCAAGCtgtcaagaaaatcaaaaacctAAAACC
ACCTGAAAAGCTTCTTATCAAAGGAGAAAATGGACTAACAGCAGACCCAA
AGGAACAAAGTGATATAATAGCTACATActtcaaaggaattttcttcaaa
aatcaagaacaaCCAACAATCGCACCACCAACACCTATGCTAGCACCGTT
CACGTCAGTCGAAATCAACAAAGctgttaagaaaatgaaacgaaACAAAA
GCCCAGGATGTGATGAAATACCAATTGAACTGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030102XLOC_030102Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047261-proteinTCONS_00047261-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047261-exon-scaffold_123-1491911889:261700..262137TCONS_00047261-exon-scaffold_123-1491911889:261700..262137Clytia hemisphaericaexon
TCONS_00047261-exon-scaffold_123-1510915933:261700..262137TCONS_00047261-exon-scaffold_123-1510915933:261700..262137Clytia hemisphaericaexon
TCONS_00047261-exon-scaffold_123-1575043694:261700..262137TCONS_00047261-exon-scaffold_123-1575043694:261700..262137Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:261700..262137 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.929548	1.05753	1.40331	1.76132	1.04462	0.33019	0.948427	0.93235	0.261104	0.16171	2.01853	0.309537	1.03603	0.784433	1.27874	1.76889	1.02409	2.01675	1.31751	2.75735	2.87868	3.71812	1.20567	1.59388	0.166336	0.148451	0.699426	0.907214	1.71954	0.700777
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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