TCONS_00047260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047260
Unique NameTCONS_00047260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3036

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047260 ID=TCONS_00047260|Name=TCONS_00047260|organism=Clytia hemisphaerica|type=transcript|length=3036bp
GCCTTGTTTAATGGAGAAAGAACACAATTTGAGGATGGAAATCTGGATAT
CTCATTCGCATTTTGCATACATTTGGtcatttttgccaaatttcatcagt
tTTTTATACACCTATGCTTGTATTTACAATTTCTCTGTTAAAATCTGTTC
AATATCTGTATTATTAAAATCTTACTTtttctagatttaaaaaaagtgtg
aaaattaTGGCAACTAATGAATCTAGCTCCTCATCTCTGGGTACTTCATC
AAGGAGCCATAAGACAAGTTCAAGTTTAGAGCCCACCCCGCAGTCTAGTA
GTAACCCAACTACTTCTAGCTCAGAACCAACACCGCAATCAAGCAATAGT
GCATCACAATCACTCCCATCTACAAAACCAATAGAAGAGGAAGACTACCA
AGAGCAGATTGCTACTGCAAACAACATTCAAAATCAGGCATGGGGTCAAT
TGAACCCTGTAAACCCGGTCAGATATTCAGCATTTATTTTAAGCGGTGAT
ACAGAAATGAAATTCGGTAGACATCCTGATCATGATTATGCATTCGATAA
AGAAATGTTGACTCAACAAGAATATTTGAACATTTCCAAAACCCATTTTA
CAATTAAGAAGGATGCAGATggaagtattaatataaaagaTCTCAGCTCG
AACGGGACATTTGTTAACAGGACCAAAATTGGTAAGAACAACACTTATCC
GCTGACTCATTTATGTGTAATTGGCATGGGATTGCCCAATCATGATGTGT
TTACATTTATTAACATGgctgaaaagaagaaggaagaAGAGAGGATGCCT
GAGGGATTCAAGGAAAAATACATTCTGGAGCATATGATTCTCGGGGAAGG
AAGACAAGGTTGTGTCAAGAAATGTTTTCTTAAAGAACAACCAAACCGAA
AATTTGCGGTTAAAGTTTTAACAAAAGGGAGGTCCTTGGATTCGCACATT
TCAGATTTCTCTTATGAAGCCAGTATTTTGTCAAGTGTAGAACATGAGTA
TATTGTGAaagtttttgattgttttgaaaacGAACATTATTTATACATGG
TTATGGAGTTTGTTCAAGGTGGTgagctttttgattttgttaaaaacaAA
GGTGCTGTGGATGAACGGCGTGCTGCAAAATTCTTTAAGCAATTACTGGA
AGGTGTTGCATATCTTCATGCTAAAGGAATCACTCACAGAGATCTGaagc
ctgaaaatattttactcAATCACAAAGATAATCCATCGATTCTCAAGGTG
ACAGATTTTGGTTTGTCTCGTTTTGTCTCCGAAACATCACTCATGGAATC
ACTTGTTGGTACCCATTCCTATCTGGCACCTGAGATTCTAAGTCCATCAA
AAAGAGCAAAAGGATACACCAAAAAAGTGGATTCTTGGTCACTTGGTTGT
ATTTTGTTCATCCTTCTTGGTGGATATCCTCCTTTCTCCAGCGAAGACCC
TGACCATGATTTGGATACGTTAATCATGAAAGGCTCATTCACGTTCCACG
AAGAACGATGGGCCCACATTTCCCAGAATGCTAAAGAATTAGTTCAAGGG
CTATTAACCGTGAACGAAGAAGATCGGCTGAGTGTCAGTGAGGCACTTGA
ACATCCGTTCATTGCTGAGTCGGATGTCCCACCCACAAAACGAAGAAAGT
CTAGttgaatttgattttgttttgtatACTGTTTGCATTCATTTTTAATT
CAGATTAGAATAATTGAATTATTTAATTACCTCATATGTTATGTAGTTAG
GAactatataatatttttatgcCACTGCGTTTAAACGTCAACCTGATACT
ATATCATCCAAATAGGATTCAGatagaaaataatcaaaagtttGATGAAC
GTTTTAGGGAAAAATATCTCCTGTTGAAGAGctggatttttttaatttaa
acatGTTCTGGGATTTATGTGAAAACTATCAGACTTTTAAAGCTATCGTG
GTTTATTCGTCGATtttgaagaaataatttttgagcTTCCTCCAAATATT
TCCTGGAGTAGCCCAAAATGTTTGCTTAATAGGGAACGATTTCTTCACTg
gcaaacaaaagatttttttgaaaaagagggaAAATTTATAAATTGATTGA
ACACTAAATTATATAAACTGAACACTTTGATATTCAATGCTGATGGATAT
GATGTTATATATTCCAGTTACTGAGACTACAAGATTCgataattgagaat
tttcattacagaatttttggaaattctaTCTTCCCAGAACAAATTTCCTA
ATTTATTtcctacttttttattttttgttaggcgaggccaatttaatttg
ttgttttacgggccaagctacccaaaaaaacAGGGTCGGTCgccgaaaaa
ataaaaataaaagtagaatccTAAATAGGCAGCAAAACCTACTTCCTCTT
GACAAAAGTGCGAAATagaaaaaagacacaaaaagctcaaattcatggat
aaattgaaaaattgagcataaaattcttgaaaccttgaaaaaactacaaa
aattttgaaaatttataaatctgtaaagcaatgaaaataaaaatgtactg
cgggcccgtaaaacaactaatcaaattggtctcgccttatgataattttg
acattatcaatataattttcttgtatatttatttttcctgATTTCTTGAA
TATTTGTCGAAATTTGAATGGAAATCACTTCCGATAATCGATCGAGAAAG
AAATGGTTGAAGGCCTAATGAGTTCTAATAACCTTGTTTTAACTTAAATG
AATTCGTAGCAAGGTTTCTTTTTCAGGGGTTTCCACCGAAATGGTTTGAC
TGCTTTTTTAAATGAAGCAGAATTtgtgaaaatcaaaaagttttccacat
gggatttaacatttttaatttgtttttaattaatttaatttgatCTTATA
AAATATCGATAGCAATATTTACAATACGAACTTAGTTTGAACACGGTTCT
GTTTTAGTCTTTTTAACAGGCTCTAAATCACATAATCGTTTTTTGGTAGT
TTACCTTGAGTTTTCCAGTATGATATTATATTTCAT
Run BLAST on NCBI

protein sequence of TCONS_00047260-protein

>TCONS_00047260-protein ID=TCONS_00047260-protein|Name=TCONS_00047260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=483bp
MATNESSSSSLGTSSRSHKTSSSLEPTPQSSSNPTTSSSEPTPQSSNSAS
QSLPSTKPIEEEDYQEQIATANNIQNQAWGQLNPVNPVRYSAFILSGDTE
MKFGRHPDHDYAFDKEMLTQQEYLNISKTHFTIKKDADGSINIKDLSSNG
TFVNRTKIGKNNTYPLTHLCVIGMGLPNHDVFTFINMAEKKKEEERMPEG
FKEKYILEHMILGEGRQGCVKKCFLKEQPNRKFAVKVLTKGRSLDSHISD
FSYEASILSSVEHEYIVKVFDCFENEHYLYMVMEFVQGGELFDFVKNKGA
VDERRAAKFFKQLLEGVAYLHAKGITHRDLKPENILLNHKDNPSILKVTD
FGLSRFVSETSLMESLVGTHSYLAPEILSPSKRAKGYTKKVDSWSLGCIL
FILLGGYPPFSSEDPDHDLDTLIMKGSFTFHEERWAHISQNAKELVQGLL
TVNEEDRLSVSEALEHPFIAESDVPPTKRRKSS
Run BLAST on NCBI

transcript from alignment at scaffold_123:252128..255163

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047260 ID=TCONS_00047260|Name=TCONS_00047260|organism=Clytia hemisphaerica|type=transcript|length=3036bp|location=Sequence derived from alignment at scaffold_123:252128..255163 (Clytia hemisphaerica)
ATGAAATATAATATCATACTGGAAAACTCAAGGTAAACTACCAAAAAACG
ATTATGTGATTTAGAGCCTGTTAAAAAGACTAAAACAGAACCGTGTTCAA
ACTAAGTTCGTATTGTAAATATTGCTATCGATATTTTATAAGatcaaatt
aaattaattaaaaacaaattaaaaatgttaaatcccatgtggaaaacttt
ttgattttcacaAATTCTGCTTCATTTAAAAAAGCAGTCAAACCATTTCG
GTGGAAACCCCTGAAAAAGAAACCTTGCTACGAATTCATTTAAGTTAAAA
CAAGGTTATTAGAACTCATTAGGCCTTCAACCATTTCTTTCTCGATCGAT
TATCGGAAGTGATTTCCATTCAAATTTCGACAAATATTCAAGAAATcagg
aaaaataaatatacaagaaaattatattgataatgtcaaaattatcataa
ggcgagaccaatttgattagttgttttacgggcccgcagtacatttttat
tttcattgctttacagatttataaattttcaaaatttttgtagttttttc
aaggtttcaagaattttatgctcaatttttcaatttatccatgaatttga
gctttttgtgtcttttttctATTTCGCACTTTTGTCAAGAGGAAGTAGGT
TTTGCTGCCTATTTAggattctacttttatttttattttttcggcGACCG
ACCCTgtttttttgggtagcttggcccgtaaaacaacaaattaaattggc
ctcgcctaacaaaaaataaaaaagtaggaAATAAATTAGGAAATTTGTTC
TGGGAAGAtagaatttccaaaaattctgtaatgaaaattctcaattatcG
AATCTTGTAGTCTCAGTAACTGGAATATATAACATCATATCCATCAGCAT
TGAATATCAAAGTGTTCAGTTTATATAATTTAGTGTTCAATCAATTTATA
AATTTtccctctttttcaaaaaaatcttttgtttgccAGTGAAGAAATCG
TTCCCTATTAAGCAAACATTTTGGGCTACTCCAGGAAATATTTGGAGGAA
gctcaaaaattatttcttcaaaATCGACGAATAAACCACGATAGCTTTAA
AAGTCTGATAGTTTTCACATAAATCCCAGAACatgtttaaattaaaaaaa
tccagCTCTTCAACAGGAGATATTTTTCCCTAAAACGTTCATCaaacttt
tgattattttctatCTGAATCCTATTTGGATGATATAGTATCAGGTTGAC
GTTTAAACGCAGTGgcataaaaatattatatagtTCCTAACTACATAACA
TATGAGGTAATTAAATAATTCAATTATTCTAATCTGAATTAAAAATGAAT
GCAAACAGTatacaaaacaaaatcaaattcaaCTAGACTTTCTTCGTTTT
GTGGGTGGGACATCCGACTCAGCAATGAACGGATGTTCAAGTGCCTCACT
GACACTCAGCCGATCTTCTTCGTTCACGGTTAATAGCCCTTGAACTAATT
CTTTAGCATTCTGGGAAATGTGGGCCCATCGTTCTTCGTGGAACGTGAAT
GAGCCTTTCATGATTAACGTATCCAAATCATGGTCAGGGTCTTCGCTGGA
GAAAGGAGGATATCCACCAAGAAGGATGAACAAAATACAACCAAGTGACC
AAGAATCCACTTTTTTGGTGTATCCTTTTGCTCTTTTTGATGGACTTAGA
ATCTCAGGTGCCAGATAGGAATGGGTACCAACAAGTGATTCCATGAGTGA
TGTTTCGGAGACAAAACGAGACAAACCAAAATCTGTCACCTTGAGAATCG
ATGGATTATCTTTGTGATTgagtaaaatattttcaggcttCAGATCTCTG
TGAGTGATTCCTTTAGCATGAAGATATGCAACACCTTCCAGTAATTGCTT
AAAGAATTTTGCAGCACGCCGTTCATCCACAGCACCTTtgtttttaacaa
aatcaaaaagctcACCACCTTGAACAAACTCCATAACCATGTATAAATAA
TGTTCgttttcaaaacaatcaaaaacttTCACAATATACTCATGTTCTAC
ACTTGACAAAATACTGGCTTCATAAGAGAAATCTGAAATGTGCGAATCCA
AGGACCTCCCTTTTGTTAAAACTTTAACCGCAAATTTTCGGTTTGGTTGT
TCTTTAAGAAAACATTTCTTGACACAACCTTGTCTTCCTTCCCCGAGAAT
CATATGCTCCAGAATGTATTTTTCCTTGAATCCCTCAGGCATCCTCTCTt
cttccttcttcttttcagcCATGTTAATAAATGTAAACACATCATGATTG
GGCAATCCCATGCCAATTACACATAAATGAGTCAGCGGATAAGTGTTGTT
CTTACCAATTTTGGTCCTGTTAACAAATGTCCCGTTCGAGCTGAGAtctt
ttatattaatacttccATCTGCATCCTTCTTAATTGTAAAATGGGTTTTG
GAAATGTTCAAATATTCTTGTTGAGTCAACATTTCTTTATCGAATGCATA
ATCATGATCAGGATGTCTACCGAATTTCATTTCTGTATCACCGCTTAAAA
TAAATGCTGAATATCTGACCGGGTTTACAGGGTTCAATTGACCCCATGCC
TGATTTTGAATGTTGTTTGCAGTAGCAATCTGCTCTTGGTAGTCTTCCTC
TTCTATTGGTTTTGTAGATGGGAGTGATTGTGATGCACTATTGCTTGATT
GCGGTGTTGGTTCTGAGCTAGAAGTAGTTGGGTTACTACTAGACTGCGGG
GTGGGCTCTAAACTTGAACTTGTCTTATGGCTCCTTGATGAAGTACCCAG
AGATGAGGAGCTAGATTCATTAGTTGCCAtaattttcacactttttttaa
atctagaaaAAGTAAGATTTTAATAATACAGATATTGAACAGATTTTAAC
AGAGAAATTGTAAATACAAGCATAGGTGTATAAAAaactgatgaaatttg
gcaaaaatgaCCAAATGTATGCAAAATGCGAATGAGATATCCAGATTTCC
ATCCTCAAATTGTGTTCTTTCTCCATTAAACAAGGC

Coding sequence (CDS) from alignment at scaffold_123:252128..255163

>TCONS_00047260 ID=TCONS_00047260|Name=TCONS_00047260|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at scaffold_123:252128..255163 (Clytia hemisphaerica)
tcaaCTAGACTTTCTTCGTTTTGTGGGTGGGACATCCGACTCAGCAATGA
ACGGATGTTCAAGTGCCTCACTGACACTCAGCCGATCTTCTTCGTTCACG
GTTAATAGCCCTTGAACTAATTCTTTAGCATTCTGGGAAATGTGGGCCCA
TCGTTCTTCGTGGAACGTGAATGAGCCTTTCATGATTAACGTATCCAAAT
CATGGTCAGGGTCTTCGCTGGAGAAAGGAGGATATCCACCAAGAAGGATG
AACAAAATACAACCAAGTGACCAAGAATCCACTTTTTTGGTGTATCCTTT
TGCTCTTTTTGATGGACTTAGAATCTCAGGTGCCAGATAGGAATGGGTAC
CAACAAGTGATTCCATGAGTGATGTTTCGGAGACAAAACGAGACAAACCA
AAATCTGTCACCTTGAGAATCGATGGATTATCTTTGTGATTgagtaaaat
attttcaggcttCAGATCTCTGTGAGTGATTCCTTTAGCATGAAGATATG
CAACACCTTCCAGTAATTGCTTAAAGAATTTTGCAGCACGCCGTTCATCC
ACAGCACCTTtgtttttaacaaaatcaaaaagctcACCACCTTGAACAAA
CTCCATAACCATGTATAAATAATGTTCgttttcaaaacaatcaaaaactt
TCACAATATACTCATGTTCTACACTTGACAAAATACTGGCTTCATAAGAG
AAATCTGAAATGTGCGAATCCAAGGACCTCCCTTTTGTTAAAACTTTAAC
CGCAAATTTTCGGTTTGGTTGTTCTTTAAGAAAACATTTCTTGACACAAC
CTTGTCTTCCTTCCCCGAGAATCATATGCTCCAGAATGTATTTTTCCTTG
AATCCCTCAGGCATCCTCTCTtcttccttcttcttttcagcCATGTTAAT
AAATGTAAACACATCATGATTGGGCAATCCCATGCCAATTACACATAAAT
GAGTCAGCGGATAAGTGTTGTTCTTACCAATTTTGGTCCTGTTAACAAAT
GTCCCGTTCGAGCTGAGAtcttttatattaatacttccATCTGCATCCTT
CTTAATTGTAAAATGGGTTTTGGAAATGTTCAAATATTCTTGTTGAGTCA
ACATTTCTTTATCGAATGCATAATCATGATCAGGATGTCTACCGAATTTC
ATTTCTGTATCACCGCTTAAAATAAATGCTGAATATCTGACCGGGTTTAC
AGGGTTCAATTGACCCCATGCCTGATTTTGAATGTTGTTTGCAGTAGCAA
TCTGCTCTTGGTAGTCTTCCTCTTCTATTGGTTTTGTAGATGGGAGTGAT
TGTGATGCACTATTGCTTGATTGCGGTGTTGGTTCTGAGCTAGAAGTAGT
TGGGTTACTACTAGACTGCGGGGTGGGCTCTAAACTTGAACTTGTCTTAT
GGCTCCTTGATGAAGTACCCAGAGATGAGGAGCTAGATTCATTAGTTGCC
At
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030101XLOC_030101Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047260-proteinTCONS_00047260-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047260-exon-scaffold_123-1491911889:252128..255163TCONS_00047260-exon-scaffold_123-1491911889:252128..255163Clytia hemisphaericaexon
TCONS_00047260-exon-scaffold_123-1510915933:252128..255163TCONS_00047260-exon-scaffold_123-1510915933:252128..255163Clytia hemisphaericaexon
TCONS_00047260-exon-scaffold_123-1575043694:252128..255163TCONS_00047260-exon-scaffold_123-1575043694:252128..255163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:252128..255163 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.2961	22.5815	7.22369	5.02068	24.9287	18.739	16.8007	15.4675	10.9907	13.9261	8.78763	6.47719	7.22647	6.73374	8.28717	8.48056	12.0504	10.466	6.01921	6.77379	9.87858	11.1754	21.3205	22.1046	7.64767	8.89523	10.6259	8.35819	15.0728	14.8649
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR000253FHA_dom
IPR008271Ser/Thr_kinase_AS
IPR008984SMAD_FHA_domain
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00047260 vs. Swiss-Prot (Human)
Match: CHK2 (Serine/threonine-protein kinase Chk2 OS=Homo sapiens GN=CHEK2 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.554e-72
Identity = 149/385 (38.70%), Postives = 216/385 (56.10%), Query Frame = 3 
Query:  513 FGRHPDHDYAFDKEMLTQQE-YLNISKTHFTIKKDADGSIN-----IKDLSSNGTFVNRTKIGKNNTYPLTHLCVIGMGLPNHDVFTFINMAEKKKEEERMPEGFKEKYILEHMILGEGRQGCVKKCFLKEQPNRKFAVKVLTK-------GRSLDSHISDFSYEASILSSVEHEYIVKVFDCFENEHYLYMVMEFVQGGELFDFVKNKGAVDERRAAKFFKQLLEGVAYLHAKGITHRDLKPENILLNHKDNPSILKVTDFGLSRFVSETSLMESLVGTHSYLAPEILSPSKRAKGYTKKVDSWSLGCILFILLGGYPPFSSEDPDHDLDTLIMKGSFTFHEERWAHISQNAKELVQGLLTVNEEDRLSVSEALEHPFIAESDV 1628
            FGR    +Y FD+ +L + + Y   SK HF I ++  G  N     I+D S NGTFVN   +GK    PL +   I + L  + VF F ++     ++   P+  +++YI+    LG G  G VK  F + +  +K A+K+++K        R  D  + +   E  IL  + H  I+K+ + F+ E Y Y+V+E ++GGELFD V     + E     +F Q+L  V YLH  GI HRDLKPEN+LL+ ++   ++K+TDFG S+ + ETSLM +L GT +YLAPE+L     A GY + VD WSLG ILFI L GYPPFS       L   I  G + F  E WA +S+ A +LV+ LL V+ + R +  EAL HP++ + D+
Sbjct:  115 FGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREV-GPKNSYIAYIEDHSGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLT--VDDQSVYPKALRDEYIMSKT-LGSGACGEVKLAF-ERKTCKKVAIKIISKRKFAIGSAREADPAL-NVETEIEILKKLNHPCIIKIKNFFDAEDY-YIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTA-GYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDM 491
The following BLAST results are available for this feature:
BLAST of TCONS_00047260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHK22.554e-7238.70Serine/threonine-protein kinase Chk2 OS=Homo sapie... [more]
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