TCONS_00047240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047240
Unique NameTCONS_00047240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047240 ID=TCONS_00047240|Name=TCONS_00047240|organism=Clytia hemisphaerica|type=transcript|length=657bp
TAtagttaaaaaagaaattaactTTTGCTAACAATGGGTGATGCAATTGA
GATCAAAACTAATTGGAAAAAGAAATATAGCTTGGATTTAGAAAGCTCTC
TTCTTTCTTGGATACAAGACGTGACTGGTGAAGATTTATCCGAAATCAAA
GGCCACGATCAATTCcgtcaaaaattcaaaacaggtGTCACGCTTTGTCA
ACTGATGAATAAAATCAAACCAGGATGTATCAAGACTTATAACAAGAATC
CGAAATTACCATTTCAACAGATGGAAAATATAGGATTTGTCAACCAAGCT
ATGAGAGAATATGGTGTTCAGAGTGAATATATTTTCGTTACCGCTGATTT
ACACCAAGGCAAGAATCTAGTCACTGTACAATTGGGATTAAGAAATCTTG
GTGATAAAGCAACCGCAAATGGATTTCAACCAGCtttcaaattatgaaat
tgtgaaattttcaacaaCAATTCCtcatttgtgattttttttctcaatat
tttagtatccttaacatatttttagaatttaaatgaaattttatattata
ttttactcatatatttttttctgctTTGTAATTGTTGAAACTTTAGAATT
TTATAGTAAATTTAACCTTTTGTTTGTGAGGCTGGTAAATAGATGGTGAT
AATTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_123:426097..427515-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047240 ID=TCONS_00047240|Name=TCONS_00047240|organism=Clytia hemisphaerica|type=transcript|length=1419bp|location=Sequence derived from alignment at scaffold_123:426097..427515- (Clytia hemisphaerica)
TATAGTTAAAAAAGAAATTAACTTTTGCTAACAATGGGTGATGCAATTGA
GATCAAAACTAATTGGAAAAAGAAATATAGCTTGGATTTAGAAAGCTCTC
TTCTTTCTTGGATACAAGGTAAGCTAGTATTATGGAACTTTCAAAACATC
AAGTGTGTCACATGTGAATATAACTGTTATGACCTTGTCTTAGTAGGCCA
TGGCTAGATGTACGGGCTCGAAAACCGCAAACTACCAACTAACCTGAAAA
AGATTATTTTCGCCCGACCAGTCTGCTTAGTCTGCGGGGAGGGAGGGGGT
GCCAAGGTTGCGACAAGTATGTATTGCGTTGCTCGACTTTTTACCCTCTT
CATGAATTTTACGACCCTTATTGAGACTAATTCATGATCTTCTGATTGAA
ATCTTCCTATTGAAACCGACCCTTAGAGGGACTGAAAATTAATTTTGTGA
TTTTCCACATCTGTACGATTCATTCACTTTCCTAGGCACCCCTTCCCTGG
GCTCAGGCTGAAAGTTAACATAAAAATACAGTTTTCTTCTTCATTTGTTC
CTTTTTAGACGTGACTGGTGAAGATTTATCCGAAATCAAAGGCCACGATC
AATTCCGTCAAAAATTCAAAACAGGTGTCACACTTTGTCAACTGATGAAT
AAAATCAATCCAGGATGCATCAAAACTTATAACAAGAATCCGAAATTACC
ATTTCAACAAATGGAAAATATAGGATTTGTCAACCAAGCTATGAGAGAGT
ATGGCGTTCAGAGTGAATACATTTTCGTTACCGCTGATNATTCATTCACT
TTCCTAGGCACCCCTTCCCTGGGCTCAGGCTGAAAGTTAACATAAAAATA
CAGTTTTTTTCTTCATTTGTTCCTTTTTAGACGTGACTGGTGAAGATTTA
TCCGAAATCAAAGGCCACGATCAATTCCGTCAAAAATTCAAAACAGGTGT
CACGCTTTGTCAACTGATGAATAAAATCAAACCAGGATGTATCAAGACTT
ATAACAAGAATCCGAAATTACCATTTCAACAGATGGAAAATATAGGATTT
GTCAACCAAGCTATGAGAGAATATGGTGTTCAGAGTGAATATATTTTCGT
TACCGCTGATTTACACCAAGGCAAGAATCTAGTCACTGTACAATTGGGAT
TAAGAAATCTTGGTGATAAAGCAACCGCAAATGGATTTCAACCAGCTTTC
AAATTATGAAATTGTGAAATTTTCAACAACAATTCCTCATTTGTGATTTT
TTTTCTCAATATTTTAGTATCCTTAACATATTTTTAGAATTTAAATGAAA
TTTTATATTATATTTTACTCATATATTTTTTTCTGCTTTGTAATTGTTGA
AACTTTAGAATTTTATAGTAAATTTAACCTTTTGTTTGTGAGGCTGGTAA
ATAGATGGTGATAATTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030092XLOC_030092Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047240-exon-scaffold_123-1575043694:427398..427515TCONS_00047240-exon-scaffold_123-1575043694:427398..427515Clytia hemisphaericaexon
TCONS_00047240-exon-scaffold_123-1575043694:426097..426635TCONS_00047240-exon-scaffold_123-1575043694:426097..426635Clytia hemisphaericaexon
TCONS_00047240-exon-scaffold_123-1510915933:427398..427515TCONS_00047240-exon-scaffold_123-1510915933:427398..427515Clytia hemisphaericaexon
TCONS_00047240-exon-scaffold_123-1510915933:426097..426635TCONS_00047240-exon-scaffold_123-1510915933:426097..426635Clytia hemisphaericaexon
TCONS_00047240-exon-scaffold_123-1491911889:427398..427515TCONS_00047240-exon-scaffold_123-1491911889:427398..427515Clytia hemisphaericaexon
TCONS_00047240-exon-scaffold_123-1491911889:426097..426635TCONS_00047240-exon-scaffold_123-1491911889:426097..426635Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:426097..427515 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0791914	0.0772241	0	0.0877228	3.73779	1.77219	1.01813	1.42974	0.467131	1.40521	0.240694	0.158223	9.48019	7.16517	1.30406	0.48257	79.7801	73.9067	16.3313	19.1157	55.8928	67.1117	18.3091	44.1639	4.98131	42.9493	7.95191	14.2541	0.878963	0
Blast
[Close]
BLAST of TCONS_00047240 vs. Swiss-Prot (Human)
Match: CNN3 (Calponin-3 OS=Homo sapiens GN=CNN3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.506e-16
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1 
Query:   31 TMGDAIEIKTNWKKKYSLDLESSLLSWIQDVTGEDLSEIKGHDQFRQKFKTGVTLCQLMNKIKPGCIKTYNKNPKLPFQQMENIGFVNQAMREYGVQSEYIFVTADLHQGKNLVTVQLGLRNLGDKATANGFQ 429
            + G + E+K     KY    E  L +WI++VTG  +        F+   K G+ LC+L+NK++PG +K  N++  L + Q+ENIG   +A++ YG++   IF   DL +  N+  VQ  L  L   A   GF 
Sbjct:    9 SYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGP-----NFQLGLKDGIILCELINKLQPGSVKKVNES-SLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFH 135
The following BLAST results are available for this feature:
BLAST of TCONS_00047240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNN32.506e-1633.83Calponin-3 OS=Homo sapiens GN=CNN3 PE=1 SV=1[more]
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