|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047232 ID=TCONS_00047232|Name=TCONS_00047232|organism=Clytia hemisphaerica|type=transcript|length=1964bp
tcagaaagaacaaaataaaataactataaaaacaaaaatgagcCAATCAC
AATTACAATCAAATTTACCATCAACCAAACCATCAAGCTATTCGGACTAC
GCACATATTAGCTCTCAACATCCTCCAGATGATGACATTTGGGGTGTATT
AGTCCCCTTGCAACTTAAGAAGTACGACACTTGTGTTTTGACGGAAGATG
TCGTATCTTTTGGTCGTCTTCCAGACAACACATTTATGTTTAGTCGGGAA
AGACACAATTTACAACAAAAGGTTTTCGATAACATCTCCAAGACACATTT
TGTTATCAAACGTGATGATAATTCATCTAAAGTCACCATTACTGATAAGT
CTATGAACGGGACTTATGTAAATGGACAAAAGATTCCTACAGACAAACCT
TTTCCTTTACCCCACCTGAGCGTTGTCTCGATGTCTGTTAcgaaaaataa
ggtttttcaGTTTTATAACCGAACACAACTGAAACTTCTTTTTGCATCAG
CTCcgagtgattttttcaaaaaatacacatNTACAACAAAAGGTTTTCGA
TAACATCTCCAAGACACATTTTGTTATCAAACGTGATGATAATTCATCTA
AAGTCACCATTACTGATAAGTCTATGAACGGGACTTAtgtaaatggacaa
aaaattccTACAGACAAACCTTTTCCTTTACCCCACCTGAGCGTTGTCTC
GATGTCCGTTAcgaaaaataaggtttttcaattttataacCGAACACAAC
TGAAACTTCTTTTTGCATCAGCTCCGagtgattttttcaagaaatacaCA
CTAGAGGATGAGATCCTGGGTAAAGGTGGCTACGCTACGGTTAAGAAAGG
CTTCAAGAATCAAGATTATCGTGATAAGGTTGCCGTTAAAATAGTCGACA
AAGATAATATACGTAACCGTTGTGGAAGTGAAAGAGACTTTTCGTACGAG
GTCAATATTGTTAAAGACTTGGATCATGAAAACATTGTGAAAATTCGcga
ttattttgaaaatgatcatTTCATATACATTGTAATGGAGTTGGCATCAG
AAGGAAGTTTGTTGGGCTATATGCGTAAAAGGCGCAGCGGTGTCATATCA
GAGCCATTATGCAAAgacttttttaaacaaattttaatGGGTGTTAAATT
TTTACACGAGAATAATATAATACATAGAGACATTAAAGCAGATAATATTC
TTTTACACCGTAATCCAGATGTTAGTTTTGTCGCTAAAATTACTGATTTC
GGTGCTTCACGTCACTTGAGTCCACAATCGCAATGTCTTTCCCCTGTGGG
AACCGAGCATTATTGGGCCCCTGAGGTCAATTCTGGCTTTGGTTACACCA
AACAAGCTGATTTATGGTCATTAGGGTGTCTCCTATTTGTAATGTTGTTT
GGTCAAACCCCTTACAAGCAAAAGCCAAACCATGCAGTCATCGAATCGTT
AATGGATGATGCAAGACTTGCCAATAAACCGTTAGTGAAAGATTTATTGT
CGGGCTTCCTGAAGATGGATCCAGAACAGAGACTTTCTATTCAAGAAGCC
ATACATCATGATTGGTTTCATCAGCAAGAATCTGTAGAAAACCCTTCGAA
ACGACAACGTGTTAAGTAAtgggttttgatttttattttgaatttcttta
cgGCGATCAACTTTCCTCTAGTTTTTGAAAGTTCTGTTTTAGATATTTTG
TTAATTTACCTAGTTTTTTCTATTCACATACGCAAGTCACTTTTTCACGA
CTCACGACAGCCATGTTTGTTGTGTGCAATATTGATGGTTTTCCTTTTTA
TTGGACTACACTTTGTATACTGAGCTGGGTATATGGTTCCTTCtttttaa
ggaatatttttctttagGGAAAGTAATTTCTCTTTTCAGTCCTAAAATTC
ACCGCacactttaggcgtacaaaatttcgcgagcagaaactttcgcaatt
tccgcgaattttgg Run BLAST on NCBI transcript from alignment at scaffold_123:246457..248420- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047232 ID=TCONS_00047232|Name=TCONS_00047232|organism=Clytia hemisphaerica|type=transcript|length=1964bp|location=Sequence derived from alignment at scaffold_123:246457..248420- (Clytia hemisphaerica)
TCAGAAAGAACAAAATAAAATAACTATAAAAACAAAAATGAGCCAATCAC
AATTACAATCAAATTTACCATCAACCAAACCATCAAGCTATTCGGACTAC
GCACATATTAGCTCTCAACATCCTCCAGATGATGACATTTGGGGTGTATT
AGTCCCCTTGCAACTTAAGAAGTACGACACTTGTGTTTTGACGGAAGATG
TCGTATCTTTTGGTCGTCTTCCAGACAACACATTTATGTTTAGTCGGGAA
AGACACAATTTACAACAAAAGGTTTTCGATAACATCTCCAAGACACATTT
TGTTATCAAACGTGATGATAATTCATCTAAAGTCACCATTACTGATAAGT
CTATGAACGGGACTTATGTAAATGGACAAAAGATTCCTACAGACAAACCT
TTTCCTTTACCCCACCTGAGCGTTGTCTCGATGTCTGTTACGAAAAATAA
GGTTTTTCAGTTTTATAACCGAACACAACTGAAACTTCTTTTTGCATCAG
CTCCGAGTGATTTTTTCAAAAAATACACATNTACAACAAAAGGTTTTCGA
TAACATCTCCAAGACACATTTTGTTATCAAACGTGATGATAATTCATCTA
AAGTCACCATTACTGATAAGTCTATGAACGGGACTTATGTAAATGGACAA
AAAATTCCTACAGACAAACCTTTTCCTTTACCCCACCTGAGCGTTGTCTC
GATGTCCGTTACGAAAAATAAGGTTTTTCAATTTTATAACCGAACACAAC
TGAAACTTCTTTTTGCATCAGCTCCGAGTGATTTTTTCAAGAAATACACA
CTAGAGGATGAGATCCTGGGTAAAGGTGGCTACGCTACGGTTAAGAAAGG
CTTCAAGAATCAAGATTATCGTGATAAGGTTGCCGTTAAAATAGTCGACA
AAGATAATATACGTAACCGTTGTGGAAGTGAAAGAGACTTTTCGTACGAG
GTCAATATTGTTAAAGACTTGGATCATGAAAACATTGTGAAAATTCGCGA
TTATTTTGAAAATGATCATTTCATATACATTGTAATGGAGTTGGCATCAG
AAGGAAGTTTGTTGGGCTATATGCGTAAAAGGCGCAGCGGTGTCATATCA
GAGCCATTATGCAAAGACTTTTTTAAACAAATTTTAATGGGTGTTAAATT
TTTACACGAGAATAATATAATACATAGAGACATTAAAGCAGATAATATTC
TTTTACACCGTAATCCAGATGTTAGTTTTGTCGCTAAAATTACTGATTTC
GGTGCTTCACGTCACTTGAGTCCACAATCGCAATGTCTTTCCCCTGTGGG
AACCGAGCATTATTGGGCCCCTGAGGTCAATTCTGGCTTTGGTTACACCA
AACAAGCTGATTTATGGTCATTAGGGTGTCTCCTATTTGTAATGTTGTTT
GGTCAAACCCCTTACAAGCAAAAGCCAAACCATGCAGTCATCGAATCGTT
AATGGATGATGCAAGACTTGCCAATAAACCGTTAGTGAAAGATTTATTGT
CGGGCTTCCTGAAGATGGATCCAGAACAGAGACTTTCTATTCAAGAAGCC
ATACATCATGATTGGTTTCATCAGCAAGAATCTGTAGAAAACCCTTCGAA
ACGACAACGTGTTAAGTAATGGGTTTTGATTTTTATTTTGAATTTCTTTA
CGGCGATCAACTTTCCTCTAGTTTTTGAAAGTTCTGTTTTAGATATTTTG
TTAATTTACCTAGTTTTTTCTATTCACATACGCAAGTCACTTTTTCACGA
CTCACGACAGCCATGTTTGTTGTGTGCAATATTGATGGTTTTCCTTTTTA
TTGGACTACACTTTGTATACTGAGCTGGGTATATGGTTCCTTCTTTTTAA
GGAATATTTTTCTTTAGGGAAAGTAATTTCTCTTTTCAGTCCTAAAATTC
ACCGCACACTTTAGGCGTACAAAATTTCGCGAGCAGAAACTTTCGCAATT
TCCGCGAATTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047232-exon-scaffold_123-1575043694:246457..248420 | TCONS_00047232-exon-scaffold_123-1575043694:246457..248420 | Clytia hemisphaerica | exon |
| TCONS_00047232-exon-scaffold_123-1510915933:246457..248420 | TCONS_00047232-exon-scaffold_123-1510915933:246457..248420 | Clytia hemisphaerica | exon |
| TCONS_00047232-exon-scaffold_123-1491911889:246457..248420 | TCONS_00047232-exon-scaffold_123-1491911889:246457..248420 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:246457..248420 - |
Blast
BLAST of TCONS_00047232 vs. Swiss-Prot (Human)
Match: CHK2 (Serine/threonine-protein kinase Chk2 OS=Homo sapiens GN=CHEK2 PE=1 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.527e-47 Identity = 124/369 (33.60%), Postives = 190/369 (51.49%), Query Frame = 3
Query: 546 FDNISKTHFVIKRD---DNSSKVTITDKSMNGTYVNGQKIPTDKPFPLPHLSVVSMSVTKNKVFQFYNRT-QLKLLFASAPSDFFKKYTLEDEILGKGGYATVKKGFKNQDYRDKVAVKIVDKDNIRNRCGSERD----FSYEVNIVKDLDHENIVKIRDYFENDHFIYIVMELASEGSLLGYMRKRRSGVISEPLCKDFFKQILMGVKFLHENNIIHRDIKADNILLHRNPDVSFVAKITDFGASRHLSPQSQCLSPVGTEHYWAPEVNSGF---GYTKQADLWSLGCLLFVMLFGQTPYKQKPNHAVIESLMDD-------------ARLANKPLVKDLLSGFLKMDPEQRLSIQEAIHHDWFHQQE 1580
+ SK HF I R+ NS I D S NGT+VN + + K PL + S +++S+++NKVF F++ T + ++ A D + + + LG G VK F+ + + KVA+KI+ K E D E+ I+K L+H I+KI+++F+ + + YIV+EL G L + + + E CK +F Q+L+ V++LHEN IIHRD+K +N+LL + + KITDFG S+ L S + GT Y APEV GY + D WSLG +LF+ L G P+ + H SL D A ++ K L DL+ L +DP+ R + +EA+ H W ++
Sbjct: 136 YRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDDQSVYPKALRDEY----IMSKTLGSGACGEVKLAFERKTCK-KVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDY-YIVLELMEGGELFDKVVGNKR--LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLI-KITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSE---HRTQVSLKDQITSGKYNFIPEVWAEVSEKAL--DLVKKLLVVDPKARFTTEEALRHPWLQDED 490
The following BLAST results are available for this feature:
|
