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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047227 ID=TCONS_00047227|Name=TCONS_00047227|organism=Clytia hemisphaerica|type=transcript|length=1872bp
ATTCGGCattgtttgaatgttttaataatttgaaaaaattattcgaaatt
tttgaatttttcgattgaaaaaaaggaaatgtaagaatttcattttgatt
aaaaaatggCGCATCATtgtgtttattttttgtttgtatgtTTTTGTTTA
TTACAAGGTTGGTGTCAAGGTTACGGTTATCAACAACAATATGGGCGGCG
ATACGCCCCCGCGAACAACAACAATGTATATGGACAAAATTTACAGCGTA
AAAACGACGTCCCTAAGAATTGGGTTGAACTCTATAAATCATTAGAACAT
AAACATACTCCTCGAAGTTCGGTAGGAGGTCGGCCGTTGTATAACAACCC
TGTTATTACGAATGCTCCGCCACAGTTTAATCAACGAAGTGGCGCAATTC
AACCCAAGGTACCTCAAATTTCACAACAAAAGGGCAGATTTGTAGTTGAC
CGTAAGAATATCATGGATTATTTCTACGCGAAACAAAATTCAAGAACACC
CAAACAAGAATTACGATTGGCTCAACAAACTATTCCATCATTAAACtcac
ttttccaaaaaagtataTACCCATCAATACTTCAAAGACACAAAGCCAAG
GATGCTTTACAAAGACAAGTTATAACATCAAAATATAATATGAAAATGCA
AAGTTCAATCAACCGTAACCTTGATAAGAAAAGTTTAATCAGAGGGCCAC
CATATTACCCTTATTACATGCCTTACACGGCAGCTTACAGAAACACGTGG
TACCCTTACCTACAACAGAGAAGCTATGTTCCATCTTCACCCACATTCAG
TCGAAACCTATATGCAGCTATGGGTAGATATGCTTCATACGCAGTCAACC
CAAACACTTACAGATCATACTATCAGCCAACCAATAGTAACATCAATCGG
TTTGCAGTCAAGAAGACAACAATCCCAAGAGGCAATGTTCCTACACAAGT
ATATCCAGCTTTCATCAGGCAAACAGTTGGACAGCCATTGGTGCAAGGAT
ATTCCCAACCAATGCCAATTGCTAAGAATATTCAAACTTTGATGCAAGCA
AACATCCAACCTTTAACAGTAACGAAAACTGTTCAACCAAACACACTAAA
GCCAATGGTAaacgcaaaaaatattcaacCTCAAACCAAACCACAACCGT
CGACGACTTTACCGGCATCGAACGATAAACCGTCAACAACAAAAGTAAAC
GCACAACCATCAACCAAAACTGGAAACTCCACAATGGTAATAACAGAAAA
AGgaagcaatgcccaaaatactAAATCAGTTGCCAACACAAATCAAGGAA
ATCCTAAACTAAAAGCTACATCACCAGCAAAGGGTACAAAACCAGTTACG
GTTCCTTCATCCGAAGCATCTGCTATAACTTCCAAGGGCAACATAGGTAA
CAAAACATCAACCAACCAACCTACAGTTCATTTACGTATCAGTAAACAAC
TCAATACAGGACAGAAACAAAATTCAACCCACGTAAAATCCATTCAAGCA
GCCGTAACTCCAATCCAACAAAAGCAGCAGAAAAATCAAGGAAAACCTCT
TTCAAAGAGTGCTAAACTAATAAACAGTACTATTACCAAGTCACCAATaa
catcaaagaaaatattgattCTGAATGACAAGACACAGTATAACCACACA
CATCATAAACGTCACTTCTTCCATAAAACACCACGAAAGTTATCCAGTAA
ACGAGAATTTCTGTCATCACCGGATGAGTTTGCAGACGAAGAAGGTGAAG
TACCATTGGAGAGCAACGCACAAGCAGTTGATGAAACCACAACAGATCCA
TTAGCAGCACTCGACGACACAAGTCAACAAGGTGAGTTACCAGCAACACA
ACAAGAAGCTTCACAACTTNCA Run BLAST on NCBI transcript from alignment at scaffold_123:77561..79814- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047227 ID=TCONS_00047227|Name=TCONS_00047227|organism=Clytia hemisphaerica|type=transcript|length=2254bp|location=Sequence derived from alignment at scaffold_123:77561..79814- (Clytia hemisphaerica)
ATTCGGCATTGTTTGAATGTTTTAATAATTTGAAAAAATTATTCGAAATT
TTTGAATTTTTCGATTGAAAAAAAGGAAATGTAAGAATTTCATTTTGATT
AAAAAATGGCGCATCATTGTGTTTATTTTTTGTTTGTATGTTTTTGTTTA
TTACAAGGTTGGTGTCAAGGTTACGGTTATCAACAACAATATGGGCGGCG
ATACGCCCCCGCGAACAACAACAATGTATATGGACAAAATTTACAGCGTA
AAAACGACGTCCCTAAGAATTGGGTTGAACTCTATAAATCATTAGAACAT
AAACATACTCCTCGAAGTTCGGTAGGAGGTCGGCCGTTGTATAACAACCC
TGTTATTACGAATGCTCCGCCACAGTTTAATCAACGAAGTGGCGCAATTC
AACCCAAGGTACCTCAAATTTCACAACAAAAGGGCAGATTTGTAGTTGAC
CGTAAGAATATCATGGATTATTTCTACGCGAAACAAAATTCAAGAACACC
CAAACAAGAATTACGATTGGCTCAACAAACTATTCCATCATTAAACTCAC
TTTTCCAAAAAAGTATATACCCATCAATACTTCAAAGACACAAAGCCAAG
GATGCTTTACAAAGACAAGTTATAACATCAAAATATAATATGAAAATGCA
AAGTTCAATCAACCGTAACCTTGATAAGAAAAGTTTAATCAGAGGGCCAC
CATATTACCCTTATTACATGCCTTACACGGCAGCTTACAGAAACACGTGG
TACCCTTACCTACAACAGAGAAGCTATGTTCCATCTTCACCCACATTCAG
TCGAAACCTATATGCAGCTATGGGTAGATATGCTTCATACGCAGTCAACC
CAAACACTTACAGATCATACTATCAGCCAACCAATAGTAACATCAATCGG
TTTGCAGTCAAGAAGACAACAATCCCAAGAGGCAATGTTCCTACACAAGT
ATATCCAGCTTTCATCAGGCAAACAGTTGGACAGCCATTGGTGCAAGGAT
ATTCCCAACCAATGCCAATTGCTAAGAATATTCAAACTTTGATGCAAGCA
AACATCCAACCTTTAACAGTAACGAAAACTGTTCAACCAAACACACTAAA
GCCAATGGTAAACGCAAAAAATATTCAACCTCAAACCAAACCACAACCGT
CGACGACTTTACCGGCATCGAACGATAAACCGTCAACAACAAAAGTAAAC
GCACAACCATCAACCAAAACTGGAAACTCCACAATGGTAATAACAGAAAA
AGGAAGCAATGCCCAAAATACTAAATCAGTTGCCAACACAAATCAAGGAA
ATCCTAAACTAAAAGCTACATCACCAGCAAAGGGTACAAAACCAGTTACG
GTTCCTTCATCCGAAGCATCTGCTATAACTTCCAAGGGCAACATAGGTAA
CAAAACATCAACCAACCAACCTACAGTTCATTTACGTATCAGTAAACAAC
TCAATACAGGACAGAAACAAAATTCAACCCACGTAAAATCCATTCAAGCA
GCCGTAACTCCAATCCAACAAAAGCAGCAGAAAAATCAAGGAAAACCTCT
TTCAAAGAGTGCTAAACTAATAAACAGTACTATTACCAAGTCACCAATAA
CATCAAAGAAAATATTGATTCTGAATGACAAGACACAGTATAACCACACA
CATCATAAACGTCACTTCTTCCATAAAACACCACGAAAGTTATCCAGTAA
ACGAGAATTTCTGTCATCACCGGATGAGTTTGCAGACGAAGAAGGTGAAG
TACCATTGGAGAGCAACGCACAAGCAGTTGATGAAACCACAACAGATCCA
TTAGCAGCACTCGACGACACAAGTCAACAAGGTAAGATTAGCTAATGGAC
ACTATCCAAATTAGTTCTTTTTGCGTCTTAAGTAATNAAGGTAAGATTAG
TTAATGGACACTATCCAAATTAGTTCTTTTTGCGTCTTAAGTAATAACTT
CTAACGAACTCGCCAAAAATAGGGACTGGTATGGACATCTGCATATTATT
TTGTACCATTTTTGATAACTCCTGCTAACGTTTTCAGCACGAAAGCGTGA
TCTCTTTAGAGCCAAAAATACGCTGCCCGACCTCACATTTAATCGGAAAG
ATTTATGAACATGAACATTCCAGTCTTTTTTAGAGTTGATAAAAATATGG
AGTTGAAAATGATTCAAAAATAGAAACTTTCCGCTGTGAATAAAAATCTG
TTCTTTTTTCTAGGTGAGTTACCAGCAACACAACAAGAAGCTTCACAACT
TNCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047227-exon-scaffold_123-1575043694:77984..79814 | TCONS_00047227-exon-scaffold_123-1575043694:77984..79814 | Clytia hemisphaerica | exon |
| TCONS_00047227-exon-scaffold_123-1575043694:77561..77601 | TCONS_00047227-exon-scaffold_123-1575043694:77561..77601 | Clytia hemisphaerica | exon |
| TCONS_00047227-exon-scaffold_123-1510915933:77984..79814 | TCONS_00047227-exon-scaffold_123-1510915933:77984..79814 | Clytia hemisphaerica | exon |
| TCONS_00047227-exon-scaffold_123-1510915933:77561..77601 | TCONS_00047227-exon-scaffold_123-1510915933:77561..77601 | Clytia hemisphaerica | exon |
| TCONS_00047227-exon-scaffold_123-1491911889:77984..79814 | TCONS_00047227-exon-scaffold_123-1491911889:77984..79814 | Clytia hemisphaerica | exon |
| TCONS_00047227-exon-scaffold_123-1491911889:77561..77601 | TCONS_00047227-exon-scaffold_123-1491911889:77561..77601 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:77561..79814 - |
Blast
The following BLAST results are available for this feature:
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