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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047225 ID=TCONS_00047225|Name=TCONS_00047225|organism=Clytia hemisphaerica|type=transcript|length=3598bp
ATCTGAGGTAAACTTACATTAGGTTGGTGATTGCgataaatttacaattt
ctttGGGATCCTTGATTTTTGTGCTTCGATAGATGAATCAGCGTGCCCTG
GGAATCCCATGGTTGTAAACCCTGGGTGTGTGACTGGATGTCCTAACATT
GATCCTGTAGATGATGGTTCTTGAGAAAAAGCCATGTTTCGTTTGGTACC
GGTGACATCTTTCGTTGATTCAGCAGCTGGAATTCGTGAGCGTGCGAACT
GTGTTAAAGGTGCACCGTGGGGTGATGTGAATCCAGCCACGCCACCCATG
CCGCCCATTCCGTATCCGAGGCGATAATTGTCGCCACTTGCGTATCCGTA
ACCAACATGGATGGTTTGTTTTTTGGTTTGTCGTCTTGGGATAGCACTCT
TCTTTGTATCTTTAGAAGCAGTATCCTTGGTAGATTTGGATGCTGAGCTA
TCTTTGGATGTcactttcttttctttgagTTTGGATCCAGGGACCTTATT
CTTGATCCAAGGCCATCCCCATCCCCAGAGTCCCGTACCGACTCCTGGAT
ATCCGTGAAAGTATGGGAAACCGTATCCACCATTGTATCCAATGGGAACG
CAGAATCGCTTGGTGGTTGCATCTTCGTGGTCATCAGCTCCATTCACTTT
CTCAACTTGATCTTTACAATGGTAAGCTTGAAGATGAGCGCCACGACCGA
AGCTAAATCCAACATTTCGTCCCATACCGTGGTGTCCACAACCTGAGCAT
CTACCTCGGCAACCGCCTGCGTGATGGCCACAACCACCACATCCACCGCA
TCCACCACCGTGACCCTGACCGTGACCTTCTCCCCAAGAATGATGACCGT
GACCACCCCACCAGTCTCCCCACCATGGGTAGGCAGACCATGGACCATAG
TTGGCATATGGATAGAACACGCCTTGTTTGGCTGCACCAGTCTCTGTGTT
TTCTTCTTCAGGAGTAGGAATATCAGCTCTGGCGTAACATCTGTTGTGTC
CGAATTTGTGTGCACTGGTATCGCAATCAATGTAGACGTGAGCTGGTCGA
TGAACAACAGGTAAGTACAATGGATGATGGCGAACACTCTTGCACAGACA
TCGTGATCCACCGCTTGGTAGATCGTGGCATTTATGACAAACACGGTAGT
TGTCGAATTTGCGTACTGGCCATCCGGAATGTCCATATACACCGTAATTG
TTCAAGCCACCACCAAGAGCGAAACCAGGGCCGCAACCGCAACCACCGGC
ATTGCATCCACAACCTCCGACAGCGCCACCAAGAGCGAAACCAGGGCCGC
AACCGCAACCACCGGCATTGCATCCACAACCTCCGACAGCGCCACCAAGG
CCAAACCCACCAGATCCTGCACCATATCCACCACCCAATCCACCGTATCC
ACCACCGAGTCCACCATATCCACCACCGAGTCCTCCGTATCCACCACCGA
GTCCTCCGAAGAAACCATTACCAGCTGGACCTTCAAAATGAAGAGAAGGA
TAAAATCGTGAGAATCGGTGAACACCGTTCAATGGAACACATGCACGGCC
ATGTCCACAATGATCATCATGTGGCAAGTGAGTCATATCAGTCAAATAAC
GGAACGAATGCGTGTTATGANATAAGCTTGAAGATGGGCGCCATGACCGA
AGCTAAATCCAACATTTCGTCCCATACCGTGGTGTCCACAACCTGAGCAT
CTACCTCGGCAACCGCCTGCGTGATTACCGCAACCATCACATCCACCGCA
TCCACCACCGTGACCCTGACCCTGACCGTGACCCGAACCGTGACCTTCTC
CAAAAGCGTGATGACCGTGACCACCCCACCAGTCTCCCCACCATGGGTAG
GCAGACCATGGACCATAGTTGGCATATGGATAGAACACGCCTTGTTTGGC
TGCACCAGTCTCTGTGTTTTCTTCTTCAGGAGTAGGAATATCAGCTCTGG
CGTAACATCTGTTGTGTCCGAATTTGTGTGCACTGGTATCGCAATCAATG
TAGACGTGAGCTGGTCGATGAACAACAGGTAAGTACAATGGATGATGACG
AACACTCTTGCACAGACATCGTGATCCACCGCTTGGTAGATCGTGGCATT
TATGACAAACACGGTAGTTGTCGAATTTGCGTACTGGCCATCCGGAATGT
CCATATACACCGTAATTGTTCAAGCCACCACCAAGAGCGAAACCAGGGCC
GCAACCGCAACCACCGGCATTGCATCCACAACCTCCGACAGCGCCACCAA
GGCCAAACCCACCAGATCCTGCACCATATCCACCACCCAATCCACCGTAT
CCACCACCGAGTCCACCATATCCACCACCGAGTCCTCCGTATCCACCACC
GAGTCCTCCGAAGAAACCATTACCAGCTGGACCTTCAAAATGAAGAGAAG
GATAAAATCGTGAGAATCGGTGAACACCGTTCAATGGAACACATGCACGG
CCATGTCCACAATGATCATCATGTGGCAAGTGAGTCATATCAGTCAAATA
ACGGAACGAATGCGTGTTATGATCCCAGTCAGACCAATCATCCCCGAAAT
GGTCATATCCGAAACTCCATGGGCCTTGGATGCGATGATCATGGTTATCA
TGCCCTGAACCATGATCACTAAAATGGTACCCACCGTGTCCAGTTGTTCC
CAAATGGCATCCACATCTCTTGGTGACCTTTGGATCTTTGGATTTGCAAC
AGTCAGGGATTTTGCTCTTGTAGTGACCACCAACGTGTCCACCACAACCA
CCGTGTCCACATCCACCATGGCCGTTTCCGCCATATCCATGACCTCCATA
GCCACCATATCCTCCTCCGCAGCCACCATGACCGCAACCACCGCCATTTC
CTCCGTAGCCTCCGTTGCCGCCACCGTATCCACCCAAACCGCCGCCATAA
CCGCCACCGTATCCACCCAAACCACCGCCATAGCCGCCACCGTAGCCACC
ACCGTGACCGCCGTGTAAGCCATGGTGACCCCATTGCCAGCCACCACCAT
CACCAATAGCGTGAGGGTGTCCCCAGTGGGAGTGACCCCAACCTCCCCAG
TGATCTCCAACTAACCACCATTTCTTGGAAGCATCTTCACCGTCAGTGGC
ATCTTCAGCTTTTTGAGGGGTAGCagttttggttttggttttgtCAACTT
TCTCACGTTTGTATCCGCCGCCGCCACCGTGGTGACCACCGTGATGATGT
CCGTGCTCACCGTGATGTCCTCCTTCGTGGTGTCCATGATGTTCACCTTC
ATGACCACCATGCTCTCCCCATTCTTCATAGAATTCATAACCATGATCAT
GATGTTGGTGACCGTGATGATGATTGTCGTGTTCGTGATGACCGTGTTGG
CCTTCGTGACCACCTTCGTCTCCGTGATGGCCACCACCCTCATGTCCACC
GCCGAAATCCCTCTTGGCAGCATCATCAGTGTTGTCCTCAGTATCTGCGA
CATCGTCTGACGATTCTTCAGATGCTTCGGCGTCCTGATTAAGAAAGATA
GAAGATTTACAGTGTTTACAGTACactgtttttcattttccttgacaAGT
CATAAGGGAAAGCAATACTTGAAAATGAGGCTAAAAAGGGGTCCTTAC Run BLAST on NCBI transcript from alignment at scaffold_123:61441..65893- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047225 ID=TCONS_00047225|Name=TCONS_00047225|organism=Clytia hemisphaerica|type=transcript|length=4453bp|location=Sequence derived from alignment at scaffold_123:61441..65893- (Clytia hemisphaerica)
ATCTGAGGTAAACTTACATTAGGTTGGTGATTGCGATAAATTTACAATTT
CTTTGGGATCCTTGATTTTTGTGCTTCGATAGATGAATCAGCGTGCCCTG
GGAATCCCATGGTTGTAAACCCTGGGTGTGTGACTGGATGTCCTAACATT
GATCCTGTAGATGATGGTTCTTGAGAAAAAGCCATGTTTCGTTTGGTACC
GGTGACATCTTTCGTTGATTCAGCAGCTGGAATTCGTGAGCGTGCGAACT
GTGTTAAAGGTGCACCGTGGGGTGATGTGAATCCAGCCACGCCACCCATG
CCGCCCATTCCGTATCCGAGGCGATAATTGTCGCCACTTGCGTATCCGTA
ACCAACATGGATGGTTTGTTTTTTGGTTTGTCGTCTTGGGATAGCACTCT
TCTTTGTATCTTTAGAAGCAGTATCCTTGGTAGATTTGGATGCTGAGCTA
TCTTTGGATGTCACTTTCTTTTCTTTGAGTTTGGATCCAGGGACCTTATT
CTTGATCCAAGGCCATCCCCATCCCCAGAGTCCCGTACCGACTCCTGGAT
ATCCGTGAAAGTATGGGAAACCGTATCCACCATTGTATCCAATGGGAACG
CAGAATCGCTTGGTGGTTGCATCTTCGTGGTCATCAGCTCCATTCACTTT
CTCAACTTGATCTTTACAATGGTAAGCTTGAAGATGAGCGCCACGACCGA
AGCTAAATCCAACATTTCGTCCCATACCGTGGTGTCCACAACCTGAGCAT
CTACCTCGGCAACCGCCTGCGTGATGGCCACAACCACCACATCCACCGCA
TCCACCACCGTGACCCTGACCGTGACCTTCTCCCCAAGAATGATGACCGT
GACCACCCCACCAGTCTCCCCACCATGGGTAGGCAGACCATGGACCATAG
TTGGCATATGGATAGAACACGCCTTGTTTGGCTGCACCAGTCTCTGTGTT
TTCTTCTTCAGGAGTAGGAATATCAGCTCTGGCGTAACATCTGTTGTGTC
CGAATTTGTGTGCACTGGTATCGCAATCAATGTAGACGTGAGCTGGTCGA
TGAACAACAGGTAAGTACAATGGATGATGGCGAACACTCTTGCACAGACA
TCGTGATCCACCGCTTGGTAGATCGTGGCATTTATGACAAACACGGTAGT
TGTCGAATTTGCGTACTGGCCATCCGGAATGTCCATATACACCGTAATTG
TTCAAGCCACCACCAAGAGCGAAACCAGGGCCGCAACCGCAACCACCGGC
ATTGCATCCACAACCTCCGACAGCGCCACCAAGGCCAAACCCACCAGATC
CTGCACCATATCCACCACCCAATCCACCGTATCCACCACCGAGTCCACCA
TATCCACCACCGAGTCCTCCGTATCCACCACCGAGTCNTCCAGGGACCTT
ATTCTTGATCCAAGGCCATCCCCATCCCCATAGTCCCGTACCGACTCCTG
GATATCCGTGAAAGTATGGGAAACCGTATCCACCATTGTATCCAATGGGA
ACGCAGAATCGCTTGGTGGTTGCATCTTCGTGGTCATCAGCTCCATTCAC
TTTCTCAACTTGATCTTTACAATGATAAGCTTGAAGATGAGCGCCATGAC
CGAAGCTAAATCCAACATTTCGTCCCATACCGTGGTGTCCACAACCTGAG
CATCTACCTCGGCAACCGCCTGCGTGATTACCGCAACCATCACATCCACC
GCATCCACCACCGTGACCCTGACCCTGACCGTGACCCGAACCGTGACCTT
CTCCAAAAGCGTGATGACCGTGACCACCCCACCAGTCTCCCCACCATGGG
TAGGCAGACCATGGACCATAGTTGGCATATGGATAGAACACGCCTTGTTT
GGCTGCACCAGTCTCTGTGTTTTCTTCTTCAGGAGTAGGAATATCAGCTC
TGGCGTAACATCTGTTGTGTCCGAATTTGTGTGCACTGGTATCGCAATCA
ATGTAGACGTGAGCTGGTCGATGAACAACAGGTAAGTACAATGGATGATG
ACGAACACTCTTGCACAGACATCGTGATCCACCGCTTGGTAGATCGTGGC
ATTTATGACAAACACGGTAGTTGTCGAATTTGCGTACTGGCCATCCGGAA
TGTCCATATACACCGTAATTGTTCAAGCCACCACCAAGAGCGAAACCAGG
GCCGCAACCGCAACCACCGGCATTGCATCCACAACCTCCGACAGCGCCAC
CAAGGCCAAACCCACCAGATCCTGCACCATATCCACCACCCAATCCACCG
TATCCACCACCGAGTCCACCATATCCACCACCGAGTCCTCCGTATCCACC
ACCGAGTCCTCCGAAGAAACCATTACCAGCTGGACCTTCAAAATGAAGAG
AAGGATAAAATCGTGAGAATCGGTGAACACCGTTCAATGGAACACATGCA
CGGCCATGTCCACAATGATCATCATGTGGCAAGTGAGTCATATCAGTCAA
ATAACGGAACGAATGCGTGTTATGANATAAGCTTGAAGATGGGCGCCATG
ACCGAAGCTAAATCCAACATTTCGTCCCATACCGTGGTGTCCACAACCTG
AGCATCTACCTCGGCAACCGCCTGCGTGATTACCGCAACCATCACATCCA
CCGCATCCACCACCGTGACCCTGACCCTGACCGTGACCCGAACCGTGACC
TTCTCCAAAAGCGTGATGACCGTGACCACCCCACCAGTCTCCCCACCATG
GGTAGGCAGACCATGGACCATAGTTGGCATATGGATAGAACACGCCTTGT
TTGGCTGCACCAGTCTCTGTGTTTTCTTCTTCAGGAGTAGGAATATCAGC
TCTGGCGTAACATCTGTTGTGTCCGAATTTGTGTGCACTGGTATCGCAAT
CAATGTAGACGTGAGCTGGTCGATGAACAACAGGTAAGTACAATGGATGA
TGACGAACACTCTTGCACAGACATCGTGATCCACCGCTTGGTAGATCGTG
GCATTTATGACAAACACGGTAGTTGTCGAATTTGCGTACTGGCCATCCGG
AATGTCCATATACACCGTAATTGTTCAAGCCACCACCAAGAGCGAAACCA
GGGCCGCAACCGCAACCACCGGCATTGCATCCACAACCTCCGACAGCGCC
ACCAAGGCCAAACCCACCAGATCCTGCACCATATCCACCACCCAATCCAC
CGTATCCACCACCGAGTCCACCATATCCACCACCGAGTCCTCCGTATCCA
CCACCGAGTCCTCCGAAGAAACCATTACCAGCTGGACCTTCAAAATGAAG
AGAAGGATAAAATCGTGAGAATCGGTGAACACCGTTCAATGGAACACATG
CACGGCCATGTCCACAATGATCATCATGTGGCAAGTGAGTCATATCAGTC
AAATAACGGAACGAATGCGTGTTATGATCCCAGTCAGACCAATCATCCCC
GAAATGGTCATATCCGAAACTCCATGGGCCTTGGATGCGATGATCATGGT
TATCATGCCCTGAACCATGATCACTAAAATGGTACCCACCGTGTCCAGTT
GTTCCCAAATGGCATCCACATCTCTTGGTGACCTTTGGATCTTTGGATTT
GCAACAGTCAGGGATTTTGCTCTTGTAGTGACCACCAACGTGTCCACCAC
AACCACCGTGTCCACATCCACCATGGCCGTTTCCGCCATATCCATGACCT
CCATAGCCACCATATCCTCCTCCGCAGCCACCATGACCGCAACCACCGCC
ATTTCCTCCGTAGCCTCCGTTGCCGCCACCGTATCCACCCAAACCGCCGC
CATAACCGCCACCGTATCCACCCAAACCACCGCCATAGCCGCCACCGTAG
CCACCACCGTGACCGCCGTGTAAGCCATGGTGACCCCATTGCCAGCCACC
ACCATCACCAATAGCGTGAGGGTGTCCCCAGTGGGAGTGACCCCAACCTC
CCCAGTGATCTCCAACTAACCACCATTTCTTGGAAGCATCTTCACCGTCA
GTGGCATCTTCAGCTTTTTGAGGGGTAGCAGTTTTGGTTTTGGTTTTGTC
AACTTTCTCACGTTTGTATCCGCCGCCGCCACCGTGGTGACCACCGTGAT
GATGTCCGTGCTCACCGTGATGTCCTCCTTCGTGGTGTCCATGATGTTCA
CCTTCATGACCACCATGCTCTCCCCATTCTTCATAGAATTCATAACCATG
ATCATGATGTTGGTGACCGTGATGATGATTGTCGTGTTCGTGATGACCGT
GTTGGCCTTCGTGACCACCTTCGTCTCCGTGATGGCCACCACCCTCATGT
CCACCGCCGAAATCCCTCTTGGCAGCATCATCAGTGTTGTCCTCAGTATC
TGCGACATCGTCTGACGATTCTTCAGATGCTTCGGCGTCCTGATTAAGAA
AGATAGAAGATTTACAGTGTTTACAGTACACTGTTTTTCATTTTCCTTGA
CAAGTCATAAGGGAAAGCAATACTTGAAAATGAGGCTAAAAAGGGGTCCT
TAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047225-exon-scaffold_123-1575043694:64611..65893 | TCONS_00047225-exon-scaffold_123-1575043694:64611..65893 | Clytia hemisphaerica | exon |
| TCONS_00047225-exon-scaffold_123-1575043694:61441..63755 | TCONS_00047225-exon-scaffold_123-1575043694:61441..63755 | Clytia hemisphaerica | exon |
| TCONS_00047225-exon-scaffold_123-1510915933:64611..65893 | TCONS_00047225-exon-scaffold_123-1510915933:64611..65893 | Clytia hemisphaerica | exon |
| TCONS_00047225-exon-scaffold_123-1510915933:61441..63755 | TCONS_00047225-exon-scaffold_123-1510915933:61441..63755 | Clytia hemisphaerica | exon |
| TCONS_00047225-exon-scaffold_123-1491911889:64611..65893 | TCONS_00047225-exon-scaffold_123-1491911889:64611..65893 | Clytia hemisphaerica | exon |
| TCONS_00047225-exon-scaffold_123-1491911889:61441..63755 | TCONS_00047225-exon-scaffold_123-1491911889:61441..63755 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:61441..65893 - |
Blast
The following BLAST results are available for this feature:
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