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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047215 ID=TCONS_00047215|Name=TCONS_00047215|organism=Clytia hemisphaerica|type=transcript|length=2142bp
TACTTCTGAAGCAAACTTCAACAAGTGAAAAATAACTCAAAATGAAGACA
ATGATTGTTCTCACGATGGCTCTTTTCGCTGtttgTTCAGCCTCCTCATT
TTACGAACCTTACAACGATTGTCCATCAAGTCTTTGCAAATGGAAACCAC
ACGGTGCAACCTTCAGATTGAGCGATAAATTGGCGCCTGTTTTCGTACAA
TGCAGTCATGGCAACGCTATTTGTTTGAACTGTCCACATGGTACCATCTT
TAACAATCAACATAATGTTTGTGTCCGAGATCAACGTGGCAGCAAGAAAT
TCGGACACTTTAACAAGCATGGTCACCATGGAGATGAAGTTCACCATTTC
AACAAAGACACGACAACGATGACAACGATCCCTACTGCGACCACCTCCAC
AACAACTGAGAAAATCGAACAACTTCCTCATGATATTCACTGCCCCTCCT
ACTTGTGCAAATGGAAGCCAAACGGTGCTTTATTCCGCTTGAGAAATGAC
AAACCACAATATTACGTTCAATGTTCGAATGGAATCGCTTACTGTAGACA
ATGCCCTTCACATcaatatttcaacaacaaatttTCTGTTTGTGTCAGAA
GAACTGTTGCGAAAGACTGGTAAATCCGAAAGGATAACGTAATGAAATCT
TGGAACTGGAAATGCTACTGGACACACGTTATAATAgtcttatatttttt
gtttgttaaatttctataatcttttgaatttatttcatgtgattatcata
ttatttttttctttgaaagcgTTGAtcgtattttgaaaatatatactcAG
GATAAATCGAAACTTACTGTCACATCGTTACCCAGTTTATCTTCAAGTTT
TGCAAGGGATCGAAAAAAACAACTGCTTATTCTAATTGgggttaaaaaat
attaaaaattctaGTGATTACCGATTAATGtacaaaaatacaattaaaaa
aaatcattgttacAATAAATTGGttagaaaattaaaattgatttacaaat
tgttttgttaaaaaattataatacaATTTAGTAGTGAGCATAATTAGCAA
TACCTTCTAATGGTCCATGactaaatcaaaattttaaagaagaaagaCCT
GAAGGAGAACCAATCTGATCTGATAATGTAGTTTCAACGTTATGGATGAA
GATTACTATCTCCAAAATTGCAAATACGGATTTAAATCAAATCTACAATG
GACATGGTTCGGAGAATTTTAGTGTGTCGAGAAAATAAACGGAAATAGAT
TTTGGGTGGTTTAAAAATCTCGTAATATCGCCAGAGCTTAGAACAATTGA
AATAAAATGGAATTCCTtatgtttaaaaataaatatattttctatTCTCA
AACgtaatgaaattattttttgaaaaacaatttggATGATTAGGTATTGA
AAATCCCTGGTCGAGGCACTCGGGCGATATTGGGAACGGGGACGTGTCAC
TGGTCAGGGTTTctttttttaggctctgaagatatctgacagggtcccaa
atttactaatttttaacatttgtacCTGACAGGGTCGTCTTTTAGgtcat
ttttgacaattttcagggtggaaatcaaaatttttaggatGAAAATGGGA
AATTTGTTTCGATTTTCCTtccgacagggtcccaaatttaccaaacattc
atatctgacagggtccacttttcaaactcccgCGGCACATCCCCGTCTGC
CGTCAAGGTCAGCCCCCCGGGTGAAATCCCTATTTATAACTTCTGTTTTC
CGGACACACTGTATAATGAACCGAGCTTTTAAAAACTCTGAACAATGTGA
GTTAGGATGTTTTAGTCACTATATAAACCCAGCTACCTTTATAATGCTGT
GTCTCTGTGACTTCAAGATTTCCAACTGATTCTAGAATATCCGTTATTTC
GTTCTGAGTaaaaatatggtaatatttCTGCTCTTCCTCAATGTCAGTTT
TCCGGTTAATTCCCAAGTTATTTgttattttatcttttcctttatgtttc
aaccatgattgtattTCTGGGAAGAGGTTGGAACAAAGTTTTTCTTTCGT
TTCACTGATTAGCGATCCTATTGGTGTGTTTTTCTTGAGAATAGCATCTG
TGTTCGGAGATGTATTGTTTTTGTTAGCTGTGAAAAAGAGAA Run BLAST on NCBI transcript from alignment at scaffold_123:459045..461746+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047215 ID=TCONS_00047215|Name=TCONS_00047215|organism=Clytia hemisphaerica|type=transcript|length=2702bp|location=Sequence derived from alignment at scaffold_123:459045..461746+ (Clytia hemisphaerica)
TACTTCTGAAGCAAACTTCAACAAGTGAAAAATAACTCAAAATGAAGACA
ATGATTGTTCTCACGATGGCTCTTTTCGCTGGTGAGTGGTtcttcgtgaa
attctggatttTTATCTAAAACACCTTCTAAGacttgttttctttatttt
tctaccCTCTTGCAAGAAAACTTTTGATCTGCTACTGTACAAACAGNGTA
AATTCAGTGGAAAATCATTCAAAATCCAAAGTTACTTCTGAAGCAAACTT
CAACAAGTGAAAAACAACTCAAAATGAAGACAATGATTGTTCTCACAATG
GCCCTTTTCGCTGgcaagtttttcaatttttaattttaagttaAACCTTT
GAAACttgttcttctttattttttacacTCTTACGAGATAACTTTTAGTC
TGCCATTTTACAGTGTTTAGTGTGGATTTTCTATGAAtgagatttgtttt
catttttcagtttgTTCAGCCTCCTCATTTTACGAACCTTACAACGATTG
TCCATCAAGTCTTTGCAAATGGAAACCACACGGTGCAACCTTCAGATTGA
GCGATAAATTGGCGCCTGTTTTCGTACAATGCAGTCATGGCAACGCTATT
TGTTTGAACTGTCCACATGGTACCATCTTTAACAATCAACATAATGTTTG
TGTCCGAGATCAACGTGGCAGCAAGAAATTCGGACACTTTAACAAGCATG
GTCACCATGGAGATGAAGTTCACCATTTCAACAAAGACACGACAACGATG
ACAACGATCCCTACTGCGACCACCTCCACAACAACTGAGAAAATCGAACA
ACTTCCTCATGATATTCACTGTAAGTAgaactttttttgcttatatggCA
ACAGCATGATAATCTTTGGTGTTGAGTATAGGTAGAGGGTCTTTTATATT
TCACTTAATGAGATGTTTTACTACAAAATGATACGGGGTTGTTTTGCAAA
GTTAGTTTCTCAATTTAGTTAATAACGAAAATATTACGTTATTTCTACCA
GGCCCCTCCTACTTGTGCAAATGGAAGCCAAACGGTGCTTTATTCCGCTT
GAGAAATGACAAACCACAATATTACGTTCAATGTTCGAATGGAATCGCTT
ACTGTAGACAATGCCCTTCACATcaatatttcaacaacaaatttTCTGTT
TGTGTCAGAAGAACTGTTGCGAAAGACTGGTAAATCCGAAAGGATAACGT
AATGAAATCTTGGAACTGGAAATGCTACTGGACACACGTTATAATAgtct
tatattttttgtttgttaaatttctataatcttttgaatttatttcatgt
gattatcatattatttttttctttgaaagcgTTGAtcgtattttgaaaat
atatactcAGGATAAATCGAAACTTACTGTCACATCGTTACCCAGTTTAT
CTTCAAGTTTTGCAAGGGATCGAAAAAAACAACTGCTTATTCTAATTGgg
gttaaaaaatattaaaaattctaGTGATTACCGATTAATGtacaaaaata
caattaaaaaaaatcattgttacAATAAATTGGttagaaaattaaaattg
atttacaaattgttttgttaaaaaattataatacaATTTAGTAGTGAGCA
TAATTAGCAATACCTTCTAATGGTCCATGactaaatcaaaattttaaaga
agaaagaCCTGAAGGAGAACCAATCTGATCTGATAATGTAGTTTCAACGT
TATGGATGAAGATTACTATCTCCAAAATTGCAAATACGGATTTAAATCAA
ATCTACAATGGACATGGTTCGGAGAATTTTAGTGTGTCGAGAAAATAAAC
GGAAATAGATTTTGGGTGGTTTAAAAATCTCGTAATATCGCCAGAGCTTA
GAACAATTGAAATAAAATGGAATTCCTtatgtttaaaaataaatatattt
tctatTCTCAAACgtaatgaaattattttttgaaaaacaatttggATGAT
TAGGTATTGAAAATCCCTGGTCGAGGCACTCGGGCGATATTGGGAACGGG
GACGTGTCACTGGTCAGGGTTTctttttttaggctctgaagatatctgac
agggtcccaaatttactaatttttaacatttgtacCTGACAGGGTCGTCT
TTTAGgtcatttttgacaattttcagggtggaaatcaaaatttttaggat
GAAAATGGGAAATTTGTTTCGATTTTCCTtccgacagggtcccaaattta
ccaaacattcatatctgacagggtccacttttcaaactcccgCGGCACAT
CCCCGTCTGCCGTCAAGGTCAGCCCCCCGGGTGAAATCCCTATTTATAAC
TTCTGTTTTCCGGACACACTGTATAATGAACCGAGCTTTTAAAAACTCTG
AACAATGTGAGTTAGGATGTTTTAGTCACTATATAAACCCAGCTACCTTT
ATAATGCTGTGTCTCTGTGACTTCAAGATTTCCAACTGATTCTAGAATAT
CCGTTATTTCGTTCTGAGTaaaaatatggtaatatttCTGCTCTTCCTCA
ATGTCAGTTTTCCGGTTAATTCCCAAGTTATTTgttattttatcttttcc
tttatgtttcaaccatgattgtattTCTGGGAAGAGGTTGGAACAAAGTT
TTTCTTTCGTTTCACTGATTAGCGATCCTATTGGTGTGTTTTTCTTGAGA
ATAGCATCTGTGTTCGGAGATGTATTGTTTTTGTTAGCTGTGAAAAAGAG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047215-exon-scaffold_123-1491911889:459045..459125 | TCONS_00047215-exon-scaffold_123-1491911889:459045..459125 | Clytia hemisphaerica | exon |
| TCONS_00047215-exon-scaffold_123-1510915933:459045..459125 | TCONS_00047215-exon-scaffold_123-1510915933:459045..459125 | Clytia hemisphaerica | exon |
| TCONS_00047215-exon-scaffold_123-1575043694:459045..459125 | TCONS_00047215-exon-scaffold_123-1575043694:459045..459125 | Clytia hemisphaerica | exon |
| TCONS_00047215-exon-scaffold_123-1491911889:459505..459864 | TCONS_00047215-exon-scaffold_123-1491911889:459505..459864 | Clytia hemisphaerica | exon |
| TCONS_00047215-exon-scaffold_123-1510915933:459505..459864 | TCONS_00047215-exon-scaffold_123-1510915933:459505..459864 | Clytia hemisphaerica | exon |
| TCONS_00047215-exon-scaffold_123-1575043694:459505..459864 | TCONS_00047215-exon-scaffold_123-1575043694:459505..459864 | Clytia hemisphaerica | exon |
| TCONS_00047215-exon-scaffold_123-1491911889:460046..461746 | TCONS_00047215-exon-scaffold_123-1491911889:460046..461746 | Clytia hemisphaerica | exon |
| TCONS_00047215-exon-scaffold_123-1510915933:460046..461746 | TCONS_00047215-exon-scaffold_123-1510915933:460046..461746 | Clytia hemisphaerica | exon |
| TCONS_00047215-exon-scaffold_123-1575043694:460046..461746 | TCONS_00047215-exon-scaffold_123-1575043694:460046..461746 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:459045..461746 + |
Blast
The following BLAST results are available for this feature:
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