|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047148 ID=TCONS_00047148|Name=TCONS_00047148|organism=Clytia hemisphaerica|type=transcript|length=4430bpRun BLAST on NCBI protein sequence of TCONS_00047148-protein >TCONS_00047148-protein ID=TCONS_00047148-protein|Name=TCONS_00047148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=850bp MLTLLLFRGANVNATDRKDRRPIHYAAFMGHIEVLHRLVSNNADIDCADKRun BLAST on NCBI transcript from alignment at scaffold_122:211674..232092- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047148 ID=TCONS_00047148|Name=TCONS_00047148|organism=Clytia hemisphaerica|type=transcript|length=20419bp|location=Sequence derived from alignment at scaffold_122:211674..232092- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_122:211674..232092- >TCONS_00047148 ID=TCONS_00047148|Name=TCONS_00047148|organism=Clytia hemisphaerica|type=CDS|length=56166bp|location=Sequence derived from alignment at scaffold_122:211674..232092- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047148 vs. Swiss-Prot (Human)
Match: ANR28 (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5) HSP 1 Score: 828.935 bits (2140), Expect = 0.000e+0 Identity = 435/909 (47.85%), Postives = 608/909 (66.89%), Query Frame = 1
Query: 460 ACATGSEACIRVLLDYQADVNARDKSWQIPLHIVAAHNFLPAAETLLSLVSNVNITDRAGRSSLHHAAYNGHAEMLTLLLFRGANVNATDRKDRRPIHYAAFMGHIEVLHRLVSNNADIDCADKKGYTPLHAAVSMGQSNVVTDLLDFGANANTKTVAGNTPLHIACLNGQGGVIADLVNFQTDVNALNSKKQTPLHLACASPVGGMCIDMLLDYGSDPNLPDANGQTPIHICATHGHVSKVRSLLQQGAQINVVDAKGNTPLHLAARNGHELFVLELLGHNADPLSRGEAGMTALHLASLGGFTDCARTLIGNGCNVNSIDGNDRTPLHCAACSGSQECLQLLVRQGSEVDLSDKLGRTPLHYAASFVHHKSVKILLNKGCTVDKQDTNGCTPLHYASAKDEDALCVDLLIKYGSLGTEVDKQGFLSLHYAALNGHRLTIQ---------ILLDHCGKKLKQKGASEVSSTTPLHFAAFYGHNDALSALMTHYTNLNAKDGNGCTPLDLASYAGHTDCVRTLLTSDNQADVLVYSHKSRRTALHAAAYNGHTDCLRLLLQHAEAEGIVDCLDGQDRTPLMLAVMNGHRDSVMLLLEQAANANAVDVNGRTSAHRGAICGQEECVDALLLSKADPNARDFHGHTPVTFASICDHIGILGTLVQNG----GNVYSLDNRRYSSLHWACYIGNESCVELILEDNSKDALSGNNFSPLHCAVLRGHDACLEVILDTLNKEDVINLKDHKGRSVLHAAAFNDHGDCIQTLLENNADVNSTDNTGQTPLMVASQRGHSSVLDAL-SDVDADFNVVDQSKNTALHHACLDSHSMCALQILEKINDE-LISAPNEDGKTCLHIAAKNGLSDVVSSLVDRGANFLAEDKQGFWPALACAPNNEVAECLRILILAMLP 3141
A A+ SE ++VLL + ADVNARDK+WQ PLHI AA+ + AE L+ L+SNVN++DRAGR++LHHAA++GH EM+ LLL RGAN+NA D+KDRR IH+AA+MGHIEV+ LVS+ A++ C DKK YTPLHAA S G +VV LLD G + N GNTPLH+AC NGQ V+ +L++ VN N K TPLH A AS G +C+++L+ G+D N+ +G+TP+H+ A HG S+ ++++Q GA I+ D GNTPLH+AAR GHEL + L+ AD RG GM LHLA+L GF+DC R L+ +G ++++ D RT LH AA G+ ECL LL+ G++ + DK GR+PLHYAA+ +++ + L+ G +V+ D GCTPLHYA+ D D C++ L++ + DKQG+ ++HY+A GHRL +Q +L++ G + + ++ +PLH AA++GH+ AL L+ +L+ ++ +G TPLDLA++ GH +CV L+ + A +LV + +RT +HAAA NGH++CLRLL+ +AE + VD DG +TPLML+V+NGH D V LL + AN +A D GRT+ HRGA+ G EECVDALL A RD G TP+ ++ C HIG+LG L+Q+ N + DN Y++LHWACY G+E+CVEL+LE GN FSPLHCAV+ ++ E+++DTL ++N D KGR+ LHAAAF DH +C+Q LL +NA VNS D+TG+TPLM+A++ G ++ ++ L S A+ + D SKNTALH AC H AL ILEKI D LI+A N +T LH+AA+NGL+ VV L+ +GA+ LA D+ G+ PALACAPN +VA+CL +++ M+P
Sbjct: 81 AVASCSEEAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFAAASTHGALCLELLVGNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQCLFALVGSGASVNDLDERGCTPLHYAATSDTDGKCLEYLLRNDANPGIRDKQGYNAVHYSAAYGHRLCLQLIASETPLDVLMETSGTDMLSDSDNR-ATISPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLI--NQGASILVKDYILKRTPIHAAATNGHSECLRLLIGNAEPQNAVDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCLLRDSRGRTPIHLSAACGHIGVLGALLQSAASMDANPATADNHGYTALHWACYNGHETCVELLLEQEVFQKTEGNAFSPLHCAVINDNEGAAEMLIDTLGAS-IVNATDSKGRTPLHAAAFTDHVECLQLLLSHNAQVNSVDSTGKTPLMMAAENGQTNTVEMLVSSASAELTLQDNSKNTALHLACSKGHETSALLILEKITDRNLINATNAALQTPLHVAARNGLTMVVQELLGKGASVLAVDENGYTPALACAPNKDVADCLALILATMMP 985 HSP 2 Score: 243.432 bits (620), Expect = 1.055e-65 Identity = 210/674 (31.16%), Postives = 337/674 (50.00%), Query Frame = 1
Query: 1084 IDMLLDYGSDPNLPDANGQTPIHICATHGHVSKVRSLLQQGAQINVVDAKGNTPLHLAARNGHELFVLELLGHNADPLSRGEAGMTALHLASLGGFTDCARTLIGNGCNVNSIDGNDRTPLHCAACSGSQECLQLLVRQGSEVDLSDKLGRTPLHYAASFVHHKSVKILLNKGCTVDKQDTNGCTPLHYASAKDEDALCVDLLIKYGSLGTEVDKQGFLSLHYAALNGHRLTIQILLDHCGKKLKQKGASEVSSTTPLHFAAFYGHND-ALSALMTHYTNLNAKDGNGCTPLDLASYAGHTDCVRTLLTSDNQADVLVYSHKSRRTALHAAAYNGHTDCLRLLLQHAEAEGIVDCLDGQDRTPLMLAVMNGHRDSVMLLLEQAANANAVDVNGRTSAHRGAICGQEECVDALLLSKADPNARDFHGHTPVTFASICDHIGILGTLVQNGGNVYSLDNRRYSSLHWACYIGNE-SCVELILEDNSKDALSGNN-FSPLHCAVLRGHDACLEVI-----LDTLNK---EDVINLKDHKGR-SVLHAAAFNDHGDCIQTLLENNADVNSTDNTGQTPLMVASQRGHSSVLDALSDVDADFNVVDQS-KNTALHHACLDSHSMCALQILEKINDE-LISAPNEDGKTCLHIAAKNGLSDVVSSLVDRGANFLAEDKQG 3063
+ L+ D N D +TP+H A G + L+ GA++N D+K TPLH A + E V LL H+AD +R + T LH+A+ CA L+ NVN D RT LH AA SG E ++LL+ +G+ ++ DK R +H+AA H + VK+L++ G V +D TPLH A++ ++ V L+ G E + G LH A NG + + L+D CG + QK TPLHFAA H L L+ + ++N K +G TPL + + G +T++ S V+ K+ T LH AA GH + L+ + A+ + G PL LA ++G D LL + + D GRT H A G EC++ LL + AD N +D G +P+ +A+ + L LV +G +V LD R + LH+A + C+E +L +++ + ++ +H + GH CL++I LD L + D+++ D++ S LH AA++ H ++ L+++ D++ +++G+TPL +A+ +GH +D L + A V D K T +H A + HS C ++ + + + +G+T L ++ NG +D V SL+++GAN A+DK G
Sbjct: 24 VRALIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDSKWLTPLHRAVASCSEEAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISV-VKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELID-CGAIVNQKNE---KGFTPLHFAAASTHGALCLELLVGNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQS---GAVIDCEDKNGNTPLHIAARYGHELLINTLIT-SGADTAKRGIHGM--FPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQCLFALVGSGASVNDLDERGCTPLHYAATSDTDGKCLEYLLRNDANPGIRDKQGYNAVHYSAAYGHRLCLQLIASETPLDVLMETSGTDMLSDSDNRATISPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYILKRTPIHAAATNGHSECLRLLIGNAEPQNAVDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGANVDAKDKWG 686 HSP 3 Score: 143.28 bits (360), Expect = 3.124e-34 Identity = 65/117 (55.56%), Postives = 90/117 (76.92%), Query Frame = 2
Query: 95 MTLVNLGTEPPIVKACFHGKPDDIQTYVDRGESVNYQDSEKRTALHAAAHCGDVECLQVLINNGAKVNVKDAKWLTPLHRACATGSEACIRVLLDYQADVNARDKSWQIPLHIVAAH 445
M + L +P +V+A F+G PD+++ + + E VN+QD+EKRT LHAAA+ GD E +++LI +GA+VN KD+KWLTPLHRA A+ SE ++VLL + ADVNARDK+WQ PLHI AA+
Sbjct: 1 MAFLKLRDQPSLVQAIFNGDPDEVRALIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDSKWLTPLHRAVASCSEEAVQVLLKHSADVNARDKNWQTPLHIAAAN 117 The following BLAST results are available for this feature:
BLAST of TCONS_00047148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.