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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047143 ID=TCONS_00047143|Name=TCONS_00047143|organism=Clytia hemisphaerica|type=transcript|length=2734bp
GGAAGAGAGAGGGAGAGGGTTGTCGTGGTGCTATTGGAACAAAATGTGGT
TTCATCTTGCAACCATTGCATAATCTTAAAAGGGACATTTCTGAGGTTAT
GTGAACTTTGTCTCTTGTGGTGGTGGgaaaaaaaaagtcaaagatGGTGC
TGGAATTTTTGAAGCGTTTTTTATCGTACACCATTGTACNAAAAAAAGTC
AAAGATGGTGCTGGAAtttttgaagcgttttttctCGTACACCATTGTAC
CCTTGCTGCTGATATCCATCATGCCAAACTTCGTGCTCGTTTTATGGTAT
ATCGTGAGTCAGTGTGATGGAAGCTTTATGCAATTTTATGAGAAAATCCT
AACTGTGCAGCCGAAAGAATTTTTGTTGGCAATGTGGCGCCCAGCATTCT
CGTGGGAATCTAAAGCACATGTCTTCATTCTCGGGTACAGCTTATGGGCT
GGTCTTTTGCAAGTTATCGTTCCTGGCCCACGACTAGAAGGCCCCCTGAC
AGCCAAAGGGAACACACCAGTGTACAAGGATAACGGGTTTTCGTGTTACG
TCATCACCATGGCAGCGTTTGGTGGATTGACGTACGTCATGAAGACGAAG
TACGGAATGACGCCGACTGTCGTGTTTGATCATTACGGAGAAGTATTAGC
GTGGTTGAGTTTGTACAGTTTATTCATTTGTGTATTGTTGTATCTGAAAG
GGCGGTTGGCGCCCTCGACATCTGATAACGGATCTAGTGGAAACTTCATC
TTTGATTATTATTGGGGTACTGAACTCTATCCACGCATCTTCGGTATTGA
CATCAAAGTATTCACTAATTGCAGATTTGGTCTAACCGTTTGGGCGTTGG
TTATTAGCATTTGTTTTCTGAAGAGTTACGAACTGTACGGTTTTGTTGAC
AGTATGTTCGTATGCTGGTTATTGCAGATTATCTATTTGACAAAGTTCTT
CTGGTGGGAAGGAGGCTACATGCGTACCATGGATATCTCTGTTGATCGAG
CTGGGTTCTACATCTGTTGGGGGTGTCTTGTCTACGTACCTGGTTTTTAC
ACATTATGTAGTTTGTACATGGTTGCGCATCCAGTGAAACTTGGTATTGA
GTTGACCGCCTTCTTCATTGTTGCCGGTGCTGCGTCAATCTTCATCAATT
ACCAAGCTGATTATCAACGCCAGGTGTTCCGTGAAACTGGGGGTAAATGT
CTGATCTGGGGTAGGAAGCCAGATATGATTTGGGCTAAATACCGCACAGA
GGCCGGTCAAGATAAATTGAATCCATTGCTTTTATCTGGATGGTGGGGTG
TTGCAAGGCATTTTCACTATTTACCAGAGCTTGCTTTATCCTTCTTTTGG
TCGGTTCCAGCTCTCTTTGATCACTTGTTACCATTctcttatttcatttt
tctgacCATCTTATTGGTTCATCGCACTTTCCGTGATGACGTCAAATGCC
AAAAGAAATATGGCAGATATTGGCAACAATACTGCAAGAAAGTACCTTAT
AAAATTGTCCCATATATTTTCTAAGTGATTGTTAACTTTTTAATTTAGgg
atctttttgaaataatttactctttatataagaataccttaagtggataa
attttggcggggatttaatttggcgatagatcaatttcgtaaaatttggc
ggggatttaatttggcgaactggaaattttgtcacactgaaatgggtgaa
aattactcaagaatatactaaaaagttgtgatttttcacataattctctt
tttgttaaatttggcggggatttaatttggcgaattgccgaatttggaaa
ttttggcgaggatttaattttgcgaattttggcataattcgccaaattcg
ccaaatttaatccccgccaaaatttatccacttaatggctaacaaattaa
aaattatgCTAAGCTGAATTTGTGTCCTAAGCAAGTTGTGAAAAATATGT
TAGAATGAAGTTTGATAGAAAACACTCTTATATTTTGATaacttacctta
agggaagaaattttcgcgggaatttaatttcgcggttcatcgattttcga
aaaattcacgggaatttaatttcgcggttgcaagatatttttggccaaaa
gcgttattaaataagcaaaaaaactgctttaaggcttgaaatagtacCAA
TTTGGGGTaatgcgtgaaataaattaaatttcgcgaattgacgattttgt
aaaatttCGCGAAAATATCTTCCCTTAATGTATTCAATCTTCCCAACCGT
CGTATGCTAATAATTGCCAAAATATAACCAGTTCTTAAAGCAAGTACATA
AACGTAAGGAAATAAATAAGCAAAGTTAGTCATTTGTCGTAGCATGATTC
CTATTATTAACttagatttaaaaattttgataatttacatttttttttta
aattaatcaCTTACAAAATTTGTACACTGatgataaaaagatatttacaa
ataaaattctAATAACGTGATATTTGATTATTTCATAAATTAGTTTTCTA
TAGTATTGACGATAAAAGTAACACTTGAAGGATCAAATTCAGGAAATACC
AGTCATTGcacttgaaaataatttatgataatgcctacatgttttttctt
ttataagcatattgatacaaaatctaaaacataaccCATTCAACCTCTTT
AGcagtaaaattaatttttagaaaaaatatgataaaactgaaaattaata
TCTTGGTAAAAATGCAGTAACTgtcaaaattttt Run BLAST on NCBI protein sequence of TCONS_00047143-protein >TCONS_00047143-protein ID=TCONS_00047143-protein|Name=TCONS_00047143-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MVLEFLKRFFSYTIVPLLLISIMPNFVLVLWYIVSQCDGSFMQFYEKILT
VQPKEFLLAMWRPAFSWESKAHVFILGYSLWAGLLQVIVPGPRLEGPLTA
KGNTPVYKDNGFSCYVITMAAFGGLTYVMKTKYGMTPTVVFDHYGEVLAW
LSLYSLFICVLLYLKGRLAPSTSDNGSSGNFIFDYYWGTELYPRIFGIDI
KVFTNCRFGLTVWALVISICFLKSYELYGFVDSMFVCWLLQIIYLTKFFW
WEGGYMRTMDISVDRAGFYICWGCLVYVPGFYTLCSLYMVAHPVKLGIEL
TAFFIVAGAASIFINYQADYQRQVFRETGGKCLIWGRKPDMIWAKYRTEA
GQDKLNPLLLSGWWGVARHFHYLPELALSFFWSVPALFDHLLPFSYFIFL
TILLVHRTFRDDVKCQKKYGRYWQQYCKKVPYKIVPYIF Run BLAST on NCBI transcript from alignment at scaffold_122:169251..172314- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047143 ID=TCONS_00047143|Name=TCONS_00047143|organism=Clytia hemisphaerica|type=transcript|length=3064bp|location=Sequence derived from alignment at scaffold_122:169251..172314- (Clytia hemisphaerica)
GGAAGAGAGAGGGAGAGGGTTGTCGTGGTGCTATTGGAACAAAATGTGGT
TTCATCTTGCAACCATTGCATAATCTTAAAAGGGACATTTCTGAGGTTAT
GTGAACTTTGTCTCTTGTGGTGGTGGGTACGTGGAAAAAGATATGTCAAT
CATGTGTTTTAGTGATTTTACGTCAACAGCTCTCATAACAACTTAACCTA
CTTTTCTTGCACAGTGAAAAATACTGAGTATTCTTGCTCGAGCTTTTTTG
CAGATTTTTAATGTTTGTAAACTACGAGCTTTTAAACCTTTAAACATACT
CAAACATTTATACCTGGAAGCGTTTGCTGTGTTAATTTTGGTTGTATCAT
TCTTCTTTTCAAAAATGAATACTAAAGGATCGGAGTGCGAGTGTTTTGAG
AAAAATACTTGAAACGTATATATAGAAATAATTCTTTCTTTATCTATCTC
TTTCAGGAAAAAAAAAGTCAAAGATGGTGCTGGAATTTTTGAAGCGTTTT
TTATCGTACACCATTGTACNAAAAAAAGTCAAAGATGGTGCTGGAATTTT
TGAAGCGTTTTTTCTCGTACACCATTGTACCCTTGCTGCTGATATCCATC
ATGCCAAACTTCGTGCTCGTTTTATGGTATATCGTGAGTCAGTGTGATGG
AAGCTTTATGCAATTTTATGAGAAAATCCTAACTGTGCAGCCGAAAGAAT
TTTTGTTGGCAATGTGGCGCCCAGCATTCTCGTGGGAATCTAAAGCACAT
GTCTTCATTCTCGGGTACAGCTTATGGGCTGGTCTTTTGCAAGTTATCGT
TCCTGGCCCACGACTAGAAGGCCCCCTGACAGCCAAAGGGAACACACCAG
TGTACAAGGATAACGGGTTTTCGTGTTACGTCATCACCATGGCAGCGTTT
GGTGGATTGACGTACGTCATGAAGACGAAGTACGGAATGACGCCGACTGT
CGTGTTTGATCATTACGGAGAAGTATTAGCGTGGTTGAGTTTGTACAGTT
TATTCATTTGTGTATTGTTGTATCTGAAAGGGCGGTTGGCGCCCTCGACA
TCTGATAACGGATCTAGTGGAAACTTCATCTTTGATTATTATTGGGGTAC
TGAACTCTATCCACGCATCTTCGGTATTGACATCAAAGTATTCACTAATT
GCAGATTTGGTCTAACCGTTTGGGCGTTGGTTATTAGCATTTGTTTTCTG
AAGAGTTACGAACTGTACGGTTTTGTTGACAGTATGTTCGTATGCTGGTT
ATTGCAGATTATCTATTTGACAAAGTTCTTCTGGTGGGAAGGAGGCTACA
TGCGTACCATGGATATCTCTGTTGATCGAGCTGGGTTCTACATCTGTTGG
GGGTGTCTTGTCTACGTACCTGGTTTTTACACATTATGTAGTTTGTACAT
GGTTGCGCATCCAGTGAAACTTGGTATTGAGTTGACCGCCTTCTTCATTG
TTGCCGGTGCTGCGTCAATCTTCATCAATTACCAAGCTGATTATCAACGC
CAGGTGTTCCGTGAAACTGGGGGTAAATGTCTGATCTGGGGTAGGAAGCC
AGATATGATTTGGGCTAAATACCGCACAGAGGCCGGTCAAGATAAATTGA
ATCCATTGCTTTTATCTGGATGGTGGGGTGTTGCAAGGCATTTTCACTAT
TTACCAGAGCTTGCTTTATCCTTCTTTTGGTCGGTTCCAGCTCTCTTTGA
TCACTTGTTACCATTCTCTTATTTCATTTTTCTGACCATCTTATTGGTTC
ATCGCACTTTCCGTGATGACGTCAAATGCCAAAAGAAATATGGCAGATAT
TGGCAACAATACTGCAAGAAAGTACCTTATAAAATTGTCCCATATATTTT
CTAAGTGATTGTTAACTTTTTAATTTAGGGATCTTTTTGAAATAATTTAC
TCTTTATATAAGAATACCTTAAGTGGATAAATTTTGGCGGGGATTTAATT
TGGCGATAGATCAATTTCGTAAAATTTGGCGGGGATTTAATTTGGCGAAC
TGGAAATTTTGTCACACTGAAATGGGTGAAAATTACTCAAGAATATACTA
AAAAGTTGTGATTTTTCACATAATTCTCTTTTTGTTAAATTTGGCGGGGA
TTTAATTTGGCGAATTGCCGAATTTGGAAATTTTGGCGAGGATTTAATTT
TGCGAATTTTGGCATAATTCGCCAAATTCGCCAAATTTAATCCCCGCCAA
AATTTATCCACTTAATGGCTAACAAATTAAAAATTATGCTAAGCTGAATT
TGTGTCCTAAGCAAGTTGTGAAAAATATGTTAGAATGAAGTTTGATAGAA
AACACTCTTATATTTTGATAACTTACCTTAAGGGAAGAAATTTTCGCGGG
AATTTAATTTCGCGGTTCATCGATTTTCGAAAAATTCACGGGAATTTAAT
TTCGCGGTTGCAAGATATTTTTGGCCAAAAGCGTTATTAAATAAGCAAAA
AAACTGCTTTAAGGCTTGAAATAGTACCAATTTGGGGTAATGCGTGAAAT
AAATTAAATTTCGCGAATTGACGATTTTGTAAAATTTCGCGAAAATATCT
TCCCTTAATGTATTCAATCTTCCCAACCGTCGTATGCTAATAATTGCCAA
AATATAACCAGTTCTTAAAGCAAGTACATAAACGTAAGGAAATAAATAAG
CAAAGTTAGTCATTTGTCGTAGCATGATTCCTATTATTAACTTAGATTTA
AAAATTTTGATAATTTACATTTTTTTTTTAAATTAATCACTTACAAAATT
TGTACACTGATGATAAAAAGATATTTACAAATAAAATTCTAATAACGTGA
TATTTGATTATTTCATAAATTAGTTTTCTATAGTATTGACGATAAAAGTA
ACACTTGAAGGATCAAATTCAGGAAATACCAGTCATTGCACTTGAAAATA
ATTTATGATAATGCCTACATGTTTTTTCTTTTATAAGCATATTGATACAA
AATCTAAAACATAACCCATTCAACCTCTTTAGCAGTAAAATTAATTTTTA
GAAAAAATATGATAAAACTGAAAATTAATATCTTGGTAAAAATGCAGTAA
CTGTCAAAATTTTT Coding sequence (CDS) from alignment at scaffold_122:169251..172314- >TCONS_00047143 ID=TCONS_00047143|Name=TCONS_00047143|organism=Clytia hemisphaerica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_122:169251..172314- (Clytia hemisphaerica)
ATGGTGCTGGAATTTTTGAAGCGTTTTTTCTCGTACACCATTGTACCCTT
GCTGCTGATATCCATCATGCCAAACTTCGTGCTCGTTTTATGGTATATCG
TGAGTCAGTGTGATGGAAGCTTTATGCAATTTTATGAGAAAATCCTAACT
GTGCAGCCGAAAGAATTTTTGTTGGCAATGTGGCGCCCAGCATTCTCGTG
GGAATCTAAAGCACATGTCTTCATTCTCGGGTACAGCTTATGGGCTGGTC
TTTTGCAAGTTATCGTTCCTGGCCCACGACTAGAAGGCCCCCTGACAGCC
AAAGGGAACACACCAGTGTACAAGGATAACGGGTTTTCGTGTTACGTCAT
CACCATGGCAGCGTTTGGTGGATTGACGTACGTCATGAAGACGAAGTACG
GAATGACGCCGACTGTCGTGTTTGATCATTACGGAGAAGTATTAGCGTGG
TTGAGTTTGTACAGTTTATTCATTTGTGTATTGTTGTATCTGAAAGGGCG
GTTGGCGCCCTCGACATCTGATAACGGATCTAGTGGAAACTTCATCTTTG
ATTATTATTGGGGTACTGAACTCTATCCACGCATCTTCGGTATTGACATC
AAAGTATTCACTAATTGCAGATTTGGTCTAACCGTTTGGGCGTTGGTTAT
TAGCATTTGTTTTCTGAAGAGTTACGAACTGTACGGTTTTGTTGACAGTA
TGTTCGTATGCTGGTTATTGCAGATTATCTATTTGACAAAGTTCTTCTGG
TGGGAAGGAGGCTACATGCGTACCATGGATATCTCTGTTGATCGAGCTGG
GTTCTACATCTGTTGGGGGTGTCTTGTCTACGTACCTGGTTTTTACACAT
TATGTAGTTTGTACATGGTTGCGCATCCAGTGAAACTTGGTATTGAGTTG
ACCGCCTTCTTCATTGTTGCCGGTGCTGCGTCAATCTTCATCAATTACCA
AGCTGATTATCAACGCCAGGTGTTCCGTGAAACTGGGGGTAAATGTCTGA
TCTGGGGTAGGAAGCCAGATATGATTTGGGCTAAATACCGCACAGAGGCC
GGTCAAGATAAATTGAATCCATTGCTTTTATCTGGATGGTGGGGTGTTGC
AAGGCATTTTCACTATTTACCAGAGCTTGCTTTATCCTTCTTTTGGTCGG
TTCCAGCTCTCTTTGATCACTTGTTACCATTCTCTTATTTCATTTTTCTG
ACCATCTTATTGGTTCATCGCACTTTCCGTGATGACGTCAAATGCCAAAA
GAAATATGGCAGATATTGGCAACAATACTGCAAGAAAGTACCTTATAAAA
TTGTCCCATATATTTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047143-exon-scaffold_122-1575043694:172189..172314 | TCONS_00047143-exon-scaffold_122-1575043694:172189..172314 | Clytia hemisphaerica | exon |
| TCONS_00047143-exon-scaffold_122-1575043694:169251..171858 | TCONS_00047143-exon-scaffold_122-1575043694:169251..171858 | Clytia hemisphaerica | exon |
| TCONS_00047143-exon-scaffold_122-1510915933:172189..172314 | TCONS_00047143-exon-scaffold_122-1510915933:172189..172314 | Clytia hemisphaerica | exon |
| TCONS_00047143-exon-scaffold_122-1510915933:169251..171858 | TCONS_00047143-exon-scaffold_122-1510915933:169251..171858 | Clytia hemisphaerica | exon |
| TCONS_00047143-exon-scaffold_122-1491911889:172189..172314 | TCONS_00047143-exon-scaffold_122-1491911889:172189..172314 | Clytia hemisphaerica | exon |
| TCONS_00047143-exon-scaffold_122-1491911889:169251..171858 | TCONS_00047143-exon-scaffold_122-1491911889:169251..171858 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_122 | supercontig | scaffold_122:169251..172314 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001171 | Ergosterol_biosynth_ERG4_ERG24 |
| IPR018083 | Sterol_reductase_CS |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0016628 |
oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor |
Blast
BLAST of TCONS_00047143 vs. Swiss-Prot (Human)
Match: DHCR7 (7-dehydrocholesterol reductase OS=Homo sapiens GN=DHCR7 PE=1 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 6.793e-64 Identity = 128/348 (36.78%), Postives = 199/348 (57.18%), Query Frame = 1
Query: 487 EGPLTAKGNTPVYKDNGFSCYVITMAAFGGLTYVMKTKYGMTPTVVFDHYGEVLAWLSLYSLFICVLLYLKGRLAPSTS-DNGSSGNFIFDYYWGTELYPRIFG-IDIKVFTNCRFGLTVWALVISICFLKSYELYGFV-DSMFVCWLLQIIYLTKFFWWEGGYMRTMDISVDRAGFYICWGCLVYVPGFYTLCSLYMVAHPVKLGIELTAFFIVAGAASIFINYQADYQRQVFRETGGKCLIWGRKPDMIWAKYRTEAGQDKLNPLLLSGWWGVARHFHYLPELALSFFWSVPALFDHLLPFSYFIFLTILLVHRTFRDDVKCQKKYGRYWQQYCKKVPYKIVPYIF 1521
EG +T G Y+ NG +++T + +++ +PT++FD++ +L ++ + +KG P+++ D +GNF ++Y G E PRI D K+F N R G+ W L+ K EL+ V ++M + +LQ IY+ FFW E Y++T+DI D G+Y+ WG V++P YTL LY+V HPV+L ++ G +I A++Q+ +FR T G+CLIWGRKP +I Y + GQ + LL+SG+WGVARHF+Y+ +L S + + HLLP+ Y I++ ILL HR RD+ +C KYGR W++Y VPY+++P IF
Sbjct: 131 EGAVTPAGVVNKYQINGLQAWLLTHLLWFANAHLLSW---FSPTIIFDNWIPLLWCANILGYAVSTFAMVKGYFFPTSARDCKFTGNFFYNYMMGIEFNPRIGKWFDFKLFFNGRPGIVAWTLINLSFAAKQRELHSHVTNAMVLVNVLQAIYVIDFFWNETWYLKTIDICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYHPVQLSTPHAVGVLLLGLVGYYIFRVANHQKDLFRRTDGRCLIWGRKPKVIECSYTSADGQRHHSKLLVSGFWGVARHFNYVGDLMGSLAYCLACGGGHLLPYFYIIYMAILLTHRCLRDEHRCASKYGRDWERYTAAVPYRLLPGIF 475
The following BLAST results are available for this feature:
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