TCONS_00047128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047128
Unique NameTCONS_00047128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length971

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047128 ID=TCONS_00047128|Name=TCONS_00047128|organism=Clytia hemisphaerica|type=transcript|length=971bp
GTGGAGGTAAAAAACAGTAACGTATTAAAGTATTTAATCTTCAATAGCCA
ATTTTCTGAATAAATTTATAAAacgtaaaatacaaaaaaatagtTACAAT
CTCCTTTCGTCCAAATTACTTTCCctgtaaaaattacaaaataaatcATT
CCTTCTTCAAACAATTGGTATACTTTTAGTCAAACATGATAACGGGGCTG
ACTTCACATTTGTCTCGAAAATTCGAATATCACGCACGGGGAAGACAATC
TAATTTCTTTTGGAGTATTCGATATGAAAACTAATTTACAAGGCTCTTTG
GGGACAGAAGGTTCGTTTGAGTTGTAGGTGATAAAAAAGCCAAAATGACG
CATCGTGCTTTCTATTAACgcatactcttaggtgccaaataaacgggccc
cccgcttgttaattattcgatttttttccaaaccccccggaccttattag
gacccccccgtttattaatttttgaaaaaattcccagctaccaaaaggaa
agttccttgttttctctaaaaagcctaaatttagtctattttgaccattt
ttagggtttttaaggtccattttccaaccccccggtaattaggtcccccc
gtttattcgaaccccccccccccgtttatttggcacctaagagtaaacaG
TTAAATCATAGCTTACAAAACACCTTTCTTTAAGATAATATTCCCATAAA
GTGCATTTTCTCCTGTAGCAACGACTGCAAATGCTTTTTCTGCGCGTTTA
TAAAATTCGAATCGTTCAATTAAGgaaactgaaatatttttcccttCTGA
TTGATTGACTGCTGCTTTGTATTCTTCCCAGATCGGAGTTTTGATTCCTT
TCACTTTGTCACTTTCGGTGGGATCCATTAACATGACAGGTGCTTCAACG
TACATATCAAGTggtaataattttaaaacgccTTTCAATATTTCCATACA
CCCATGGCCGTCAGCTCTTat
Run BLAST on NCBI

transcript from alignment at scaffold_122:41192..42216-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047128 ID=TCONS_00047128|Name=TCONS_00047128|organism=Clytia hemisphaerica|type=transcript|length=1025bp|location=Sequence derived from alignment at scaffold_122:41192..42216- (Clytia hemisphaerica)
GTGGAGGTAAAAAACAGTAACGTATTAAAGTATTTAATCTTCAATAGCCA
ATTTTCTGAATAAATTTATAAAACGTAAAATACAAAAAAATAGTTACAAT
CTCCTTTCGTCCAAATTACTTTCCCTGTAAAAATTACAAAATAAATCATT
CCTTCTTCAAACAATTGGTATACTTTTAGTCAAACATGATNAAAATAAAT
TATTCCTTCTTCAAACAATTGGTATACTTTTAATCAAACATGATAACGGG
GCTGACTTCACATTTGTCTCGAAAATTCGAATATCACGCACGGGGAAGAC
AATCTAATTTCTTTTGGAGTATTCGATATGAAAACTAATTTACAAGGCTC
TTTGGGGACAGAAGGTTCGTTTGAGTTGTAGGTGATAAAAAAGCCAAAAT
GACGCATCGTGCTTTCTATTAACGCATACTCTTAGGTGCCAAATAAACGG
GCCCCCCGCTTGTTAATTATTCGATTTTTTTCCAAACCCCCCGGACCTTA
TTAGGACCCCCCCGTTTATTAATTTTTGAAAAAATTCCCAGCTACCAAAA
GGAAAGTTCCTTGTTTTCTCTAAAAAGCCTAAATTTAGTCTATTTTGACC
ATTTTTAGGGTTTTTAAGGTCCATTTTCCAACCCCCCGGTAATTAGGTCC
CCCCGTTTATTCGAACCCCCCCCCCCCGTTTATTTGGCACCTAAGAGTAA
ACAGTTAAATCATAGCTTACAAAACACCTTTCTTTAAGATAATATTCCCA
TAAAGTGCATTTTCTCCTGTAGCAACGACTGCAAATGCTTTTTCTGCGCG
TTTATAAAATTCGAATCGTTCAATTAAGGAAACTGAAATATTTTTCCCTT
CTGATTGATTGACTGCTGCTTTGTATTCTTCCCAGATCGGAGTTTTGATT
CCTTTCACTTTGTCACTTTCGGTGGGATCCATTAACATGACAGGTGCTTC
AACGTACATATCAAGTGGTAATAATTTTAAAACGCCTTTCAATATTTCCA
TACACCCATGGCCGTCAGCTCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030049XLOC_030049Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047128-exon-scaffold_122-1575043694:42032..42216TCONS_00047128-exon-scaffold_122-1575043694:42032..42216Clytia hemisphaericaexon
TCONS_00047128-exon-scaffold_122-1575043694:41192..41977TCONS_00047128-exon-scaffold_122-1575043694:41192..41977Clytia hemisphaericaexon
TCONS_00047128-exon-scaffold_122-1510915933:42032..42216TCONS_00047128-exon-scaffold_122-1510915933:42032..42216Clytia hemisphaericaexon
TCONS_00047128-exon-scaffold_122-1510915933:41192..41977TCONS_00047128-exon-scaffold_122-1510915933:41192..41977Clytia hemisphaericaexon
TCONS_00047128-exon-scaffold_122-1491911889:42032..42216TCONS_00047128-exon-scaffold_122-1491911889:42032..42216Clytia hemisphaericaexon
TCONS_00047128-exon-scaffold_122-1491911889:41192..41977TCONS_00047128-exon-scaffold_122-1491911889:41192..41977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_122supercontigscaffold_122:41192..42216 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.18115	0	1.14903	0.333404	0	0	0	0.160085	0	0	0	0	0	0	0	0	0	0	0	0	0.156471	0.332608	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023750RbsD-like
IPR007721RbsD_FucU
Vocabulary: Molecular Function
TermDefinition
GO:0048029monosaccharide binding
GO:0016853isomerase activity
Vocabulary: Biological Process
TermDefinition
GO:0005996monosaccharide metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005996 monosaccharide metabolic process
molecular_function GO:0016853 isomerase activity
molecular_function GO:0048029 monosaccharide binding
Blast
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BLAST of TCONS_00047128 vs. Swiss-Prot (Human)
Match: FUCM (Fucose mutarotase OS=Homo sapiens GN=FUOM PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.788e-34
Identity = 60/102 (58.82%), Postives = 82/102 (80.39%), Query Frame = -1 
Query:  666 IRADGHGCMEILKGVLKLLPLDMYVEAPVMLMDPTESDKVKGIKTPIWEEYKAAVNQSEGKNISVSLIERFEFYKRAEKAFAVVATGENALYGNIILKKGVL 971
            IRADG G  ++L+ VLKLLPLD YVE+P  +M+   SDK +G++TP+W EY++ + ++ G   +++ IERFEFY+RA+KAFAVVATGE ALYGN+IL+KGVL
Sbjct:   48 IRADGLGIPQLLEAVLKLLPLDTYVESPAAVMELVPSDKERGLQTPVWTEYESILRRA-GCVRALAKIERFEFYERAKKAFAVVATGETALYGNLILRKGVL 148
The following BLAST results are available for this feature:
BLAST of TCONS_00047128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FUCM7.788e-3458.82Fucose mutarotase OS=Homo sapiens GN=FUOM PE=1 SV=... [more]
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