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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047109 ID=TCONS_00047109|Name=TCONS_00047109|organism=Clytia hemisphaerica|type=transcript|length=3200bp
CATAATTAGTTTAAATACAAAATATATACGACAAGtgataaaatgaaaat
ggcCCTCCAAAAATAATGCTGTaaaatgtttataaataaatgaatgaatg
aatgaatgaatgaatgagtaAGTGAAATGAATAAATGATCAGAGCTGGTA
ATCACGAAAAATTTCCTGAACGAAAAGATTGCGTTGACTAAAAAGAAAAT
CCCTTCCCGATTCTGTCATTCGTAATGGCCACCACATTGGATGTCCcgaa
aattttcagctttaacCTTCCACGGTCATTTACGGAGTACACAAAGGGAA
CTTTCCCAATCGGGAAGCATGGTCCCTTCCGAAGTCAGAAACTGTAAATG
TTAATTATTCGTATATGCAATTCTTGCAATTATCATAATGTtagaaatta
agttttagaaatTAGTATACCAGTAATTGttacaaaagaaaattataatc
attaaaaactgtaaaaaatataatacaaaaataacttCAGAACGACCAAG
TGCGACAAAAGTGCGATAATGTATATTGCTTTTCGTGACGTGATGACGGT
GAAATTAATCAAAGAGCAGCAATGCCTCCGTACGCAGTGAAAATATAAAC
TTCATTAGGATCAACTTTGTTTTTCGCAACAGTGATAACCACATTTTCCA
ACAAAGGGTAGCTCGACAAATTGACGTAATCGTCAACTCGATATTTGGGG
AACCCACACTGGCACGACGCATGGTTAAATGAGGGTAAAATCTGCTCCAT
TTCGGTCATTCGAACGCTCCAATCCGTTAAATCAAATAAGTCGCTTTCGC
AAAAATTTTCGAGCCATGCATACAGCGAGCCGCTTGCTTCCGTAATAGGA
GATTCTTCAACCAAATCGTTGACGGTTAATTTAATTTTGCTGAAGTCAGC
AATAATACTGTTGAAAGTATGCGTTGAACATTCCTTACTGAATGTACCAG
TAACATCTTTAAACATGCAACAACAATTTTCATCCTTTTCAATGGTGACA
GGTCGATCGAGTTTTCTGACGATGGTTGATCCTGGCTTCGGTACATTTGG
AACATCAATTTTAGTAGCAGAATATGTTGGTGGAAATGTTTCACATTGAG
AAAAGAAATCGTTGAAGAATTCATCTCGCGCCTCGTCAGTGTACGTTATA
CATTGAAATTCTTCTGATTTCAAAGCATACAGATCTAATTCTGATTGAGA
ATTTGATCCCTCTGACGATTCAGGCTCTGGTATATCTTCTGTGTCGGGTG
GTAACTCATTTTTACAGTATTCATAATATCTGTCAATAGCATTGAGAATA
TATCGTCCATGAAAGTCTCTTGACTTGTAAGATTTCCACTTGCCAATGTT
TGAGAAGTAATCCTCACAATCGTCATAGTCAGAATCAAGGCCAGAGCTGG
ATTCACCATCGGATTCACCACCAGATTCTTCATCATCAGATTCTCGACCA
AGCCTCGTGACATGTGATCTGATTTCAGATTCTACATCAATGCCTATATC
ATCTCGATCGAAATGTGTTGACATGAATTTCCTATCAACACTATGGTACA
AATCTTCATTTGGATTCTTGTTAGCTTTTCTTTGAGCTACTTTGAAGATG
GTACCGTGAACAGATTCCTCAGCAAATACACCATAAAGAAGATCTCTCAA
CTGTACAGTTGTTGCACTCCTTGTTTCTCTATCATAATTTACCAAATAGT
GTTTATCATTGGGTGCATTTCCGAGTAAACAAATTGAATGCACTGCTGCA
ACTTTAATGCATCTTTCCAGATTGGCTGTGACAAATTCTCCATTTTGAAA
TGAGAATTTGGTGAAAACTCCACTGTGGTAGTCAACAGTTGGCATGAATC
TACTGGAAAGCACTTTCCGTTTTTCTGTATTCAAAGATGGAAAAACTTCA
CATAAGCTTTGTAAAGATTTGTCATCCTGCAGGTAGACCATGATCTTATG
CCAAACCTCTTGAGAGAAAATGTTGAATGGGTTCGTTATAGGAGCAGATG
AGTTGGTGGACAAAGTTGATATTTGTGAATTTGATATGGAATGGTCTTGA
GAGATTGGTAATTCCTTTGGCAACACAGGTTCTGAGACAGCGTCAAAATG
TTGTGGGTAGTTATACCTCAACGAGAGACTTTTCTCATAACATTCATTTG
CTCTCTTATTGTCCTTTTCCATTTCAAATTGCTGTGCTTGGCGAAATAAT
TGTAAACATTTCTGATAATCATCAATCTCATCTTTGGGAGGGTAGAATCC
CAATTTGACATCCACACGTTCAACCATAATGTCTGTTTTGATGACAAATT
TGTAACTTTTGTTTGGTGTAAGTTTACAACCTTCATGGATCaagttttgt
ttgaaaatgagaCCACAACCAGTTTCTGGAGAGACAGAGAAACAGTCATA
CCCTGAACGTAAACTTCTATGTCTCTTGATTTCTTCCTTCACAGTGCATC
CTTTGGTGTCAATAGATGAGTCTTTTGGAACATAAAATTTTGTCTGACCG
CCACGAAAACCATCATTCAAATAGATGAGCATAGTATACAACGATCTTTT
GTGACCATTGGGACAAAATGAAGCATCTCTATGAGGagcaaaaaattctt
tcttttttccgccatatCTATTCACTCAGGCGCATTGCTTGATTGACACA
AGATAACTTCCAATGGCCCCTAGCTGCATCAAAGCCAAATGGATGAATAC
GAGCATCTCCGATTTGCTTTTCAAATTGGTTGGAAATATTATCCCAAAGA
AAATCTGCAAATTCTTCATCAAATAAAACTAATCGAGAATTCTTTCTTGT
TTCATCATAGCAACATAACTGCAAGTTTAGATTTTCAGCTTTACCAATAA
TTTCTTTGCATTGAGGTTCAGTCAACAAATTCTTCACCAAATAAATATCA
TTtgcaatttttgtcaatttctatGTCTGGTTTAACATCTGCCATCTTGT
CATCAAGAAATCGAAAATCTTTTCCCCAATCAGTTGTACGTAAAGAAGTT
TCTGCCAGGAGATATGGTTTTCCAATCATGTCAGGCGTGATGTTATTTCT
TATTATGTTTTTCACATTGTTGTACATTTTGGTTTCTTCTatctaaaata
taaatatacatTATTAAAAAAGACCCAAAGACATTCAAATTCTCTCTtgt
agaaaaaataaaagttaaaatagTACCTCGAGACCATGCATCCTTTTTCA Run BLAST on NCBI transcript from alignment at scaffold_121:3946..10037- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047109 ID=TCONS_00047109|Name=TCONS_00047109|organism=Clytia hemisphaerica|type=transcript|length=6092bp|location=Sequence derived from alignment at scaffold_121:3946..10037- (Clytia hemisphaerica)
CATAATTAGTTTAAATACAAAATATATACGACAAGTGATAAAATGAAAAT
GGCCCTCCAAAAATAATGCTGTAAAATGTTTATAAATAAATGAATGAATG
AATGAATGAATGAATGAGTAAGTGAAATGAATAAATGATCAGAGCTGGTA
ATCACGAAAAATTTCCTGAACGAAAAGATTGCGTTGACTAAAAAGAAAAT
CCCTTCCCGATTCTGTCATTCGTAATGGCCACCACATTGGATGTCCCGAA
AATTTTCAGCTTTAACCTTCCACGGTCATTTACGGAGTACACAAAGGGAA
CTTTCCCAATCGGGAAGCATGGTCCCTTCCGAAGTCAGAAACTGTAAATG
TTAATTATTCGTATATGCAATTCTTGCAATTATCATAATGTTAGAAATTA
AGTTTTAGAAATTAGTATACCAGTAATTGTTACAAAAGAAAATTATAATC
ATTAAAAACTGTAAAAAATATAATACAAAAATAACTTCAGAACGACCAAG
TGCGACAAAAGTGCGATAATGTATATTGCTTTTCGTGACGTGATGACGGT
GAAATTAATCAAAGAGCAGCAATGCCTCCGTACGCAGTGAAAATATAAAC
TTCATTAGGATCAACTTTGTTTTTCGCAACAGTGATAACCACATTTTCCA
ACAAAGGGTAGCTCGACAAATTGACGTAATCGTCAACTCGATATTTGGGG
AACCCACACTGGCACGACGCATGGTTAAATGAGGGTAAAATCTGCTCCAT
TTCGGTCATTCGAACGCTCCAATCCGTTAAATCAAATAAGTCGCTTTCGC
AAAAATTTTCGAGCCATGCATACAGCGAGCCGCTTGCTTCCGTAATAGGA
GATTCTTCAACCAAATCGTTGACGGTTAATTTAATTTTGCTGAAGTCAGC
AATAATACTGTTGAAAGTATGCGTTGAACATTCCTTACTGAATGTACCAG
TAACATCTTTAAACATGCAACAACAATTTTCATCCTTTTCAATGGTGACA
GGTCGATCGAGTTTTCTGACGATGGTTGATCCTGGCTTCGGTACATTTGG
AACATCAATTTTAGTAGCAGAATATGTTGGTGGAAATGTTTCACATTGAG
AAAAGAAATCGTTGAAGAATTCATCTCGCGCCTCGTCAGTGTACGTTATA
CATTGAAATTCTTCTGATTTCAAAGCATACAGATCTAATTCTGATTGAGA
ATTTGATCCCTCTGACGATTCAGGCTCTGGTATATCTTCTGTGTCGGGTG
GTAACTCATTTTTACAGTATTCATAATATCTGTCAATAGCATTGAGAATA
TATCGTCCATGAAAGTCTCTTGACTTGTAAGATTTCCACTTGCCAATGTT
TGAGAAGTAATCCTCACAATCGTCATAGTCAGAATCAAGGCCAGAGCTGG
ATTCACCATCGGATTCACCACCAGATTCTTCATCATCAGATTCTCGACCA
AGCCTCGTGACATGTGATCTGATTTCAGATTCTACATCAATGCCTATATC
ATCTCGATCGAAATGTGTTGACATGAATTTCCTATCAACACTATGGTACA
AATCTTCATTTGGATTCTTGTTAGCTTTTCTTTGAGCTACTTTGAAGATG
GTACCGTGAACAGATTCCTCAGCAAATACACCATAAAGAAGATCTCTCAA
CTGTACAGTTGTTGCACTCCTTGTTTCTCTATCATAATTTACCAAATAGT
GTTTATCATTGGGTGCATTTCCGAGTAAACAAATTGAATGCACTGCTGCA
ACTTTAATGCATCTTTCCAGATTGGCTGTGACAAATTCTCCATTTTGAAA
TGAGAATTTGGTGAAAACTCCACTGTGGTAGTCAACAGTTGGCATGAATC
TACTGGAAAGCACTTTCCGTTTTTCTGTATTCAAAGATGGAAAAACTTCA
CATAAGCTTTGTAAAGATTTGTCATCCTGCAGGTAGACCATGATCTTATG
CCAAACCTCTTGAGAGAAAATGTTGAATGGGTTCGTTATAGGAGCAGATG
AGTTGGTGGACAAAGTTGATATTTGTGAATTTGATATGGAATGGTCTTGA
GAGATTGGTAATTCCTTTGGCAACACAGGTTCTGAGACAGCGTCAAAATG
TTGTGGGTAGTTATACCTCAACGAGAGACTTTTCTCATAACATTCATTTG
CTCTCTTATTGTCCTTTTCCATTTCAAATTGCTGTGCTTGGCGAAATAAT
TGTAAACATTTCTGATAATCATCAATCTCATCTTTGGGAGGGTAGAATCC
CAATTTGACATCCACACGTTCAACCATAATGTCTGTTTTGATGACAAATT
TGTAACTTTTGTTTGGTGTAAGTTTACAACCTTCATGGATCAAGTTTTGT
TTGAAAATGAGACCACAACCAGTTTCTGGAGAGACAGAGAAACAGTCATA
CCCTGAACGTAAACTTCTATGTCTCTTGATTTCTTCCTTCACAGTGCATC
CTTTGGTGTCAATAGATGAGTCTTTTGGAACATAAAATTTTGTCTGTCCG
CCACAAAAATCATCATTCAAATAAATGAGCATAGTATACAATGATCTCAT
ATCACCATTGGGACAGAATGGAGCATCTCTGTGGGGACCGAAAAACTCTT
TCCTTTTTCCACTGTATCTGTTCAAACGCATGGCTTGATTGACACAAGAT
AACTTCCAATGGCCTCTAGCGGCGTCGAAACCGAATGGATGAATTTGATC
ACTTTCAAGTTTGTTTATAAACTTCTCAGAAATATTATTCCAAAGAAAAT
CAGCAAATGTTTCATCAAATAAAACTAGTCTGGAATTGTTTCGTTCCTGT
GCGTAACAACAAAGTTGCATGTTTAATGTATTTGCTTTACCAATGATCTC
CTCACATTGTGATTCTGTCAAAAGGTTTCGCACCAAATAAATATCACTTG
CAATTTCATCAATTTCTATGTCTGGTTTAACATCTGCCATCTTGTCACCA
AGAAATCGAAAATCTTTTCCCCAATCAGTTGTACGTAAAGAAGTTTCTGC
CAGGAGATATGGTTTTCCAATCATGTCAGGAGTGACATCATTTCTTATTA
TGTTTTTTACGTTCTTATACATTTTGTTTTATTTATCTAAAATGAAAAAT
AATATACACGTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTTG
ATGGCCAAAATGTTAAGAACAAGTAAGAACATTTTAAGGCTTTGCGGACT
CGAAAACACCCGATATTTTAGGAAAATGGGTAAAAAAATCACAAAATGGT
GAAAAATAAGAACATATTAAGAACATTTTTTAGGCTCTAATAATCTTTAA
AATAAAATATAATTATATTTGGATAGTTTAAGGGATATTATTTCCACTGA
TTGGTGAAGATAGATATCAACCTTTTGGCAGTTTGTTAAAAAAAGTTTTA
TTCGAAACTTGCTATCTACAATGTTTTGAGATAAAACTATTTACTGTGAT
ATATATTTGAGTGAGCTACGAAAACAAAAAAACTGAAGCTTGTATGTGCA
AATAGGATCATAAAACAAAATAATTCATCATAGAGCAGTGATACCATCAT
ACTCCGTATAGATATAAACTTCGTTTGAATCCTTTTTATTCGTTGCCACG
ACAACAGCAATGGTATCTAACATTGGATAGTTGGACAAATTGACATAATC
ATTAACTTTGTAATTTGGGAACATACACTGGCACGACGCATGATTGAAAG
AAGAGAACACTTCTTCCATTTGCCTGATATTTACACGGTATGTTATCAAC
TCAAAATCTCCATCATCACAAAAATGTTCAATCCATTGGGAAAATTGGTA
AACTGAGTTCAAATAATCAGCAGCTAATTCTACCGCCAGTTTCGTTTTGC
TGAAATTAGCAACAATACTATTAAAAAGATGAGTGGAGCAGTTTTCAGTC
AATCTACTACCAACATCTGCAAAAACACAAACACAGCTCTCTCCTCTCAT
ATCATCAATTGGTTTATTTAGTTTTCGGAAGATTGCACAACTTGGTTCTA
ATGAGGTAGGAACATTCATCCTGGTTACATGATAGTTGTAATGGTCTTCA
GGGACTAATTTTTCCAGTAGTTCGTTTCGTTGATCTTCTGGGTACGTAAT
ACAATCATATAAACAAGCAGATGATTTATAATAATCAGCCTCGTCAGCTG
ACTTAGGTGGAAACTTATTTCTACAATATCGGTAATAGTGGTCAAAACCA
TCTAAGGTTATACGATTGTGAAAATCTTTTATAGGATATGGTTTATCTTT
GGCATTATTGTAGAAATCTTTCTTCGTGAATTCATCAGTTTTTCCTTCTC
GGTCACTTTCCTCAGAATCGCTGTACTCTTCATCATCACTGTCCTTATCA
TATATCGTGAGATGTGATCTAATTTCAGATTTTAAATCAATACCAATATC
ATCTCGATCAAAATGTGTTGACATGAATTTCCTATCAACACTATGGTACA
AATCTTCATTCGGATTCTTGTTAGCTTTTCTTTGAGCTACTTTGAAGAAT
GTTCCTTGGACAGGTTCCTCAGCAAACACCCCATAAAGAAGATCTTTCAA
TTGGGCTGTAGTAGCATTTCTAGTTTCTCTATCATAATTCACCAAATAAT
GCGAATTTCTTTGCTCATTACCAAGTAAACACATTGAATAAACTGCTGAA
ACTTTAATACACCTTTCTAGATTTTCAGAAACAAACTTTCCATTTTGAAA
TGGGAATTTGGTGAAAATTCCACTATGATGGTCAACCTTTGGCACAAATT
GATTGGACAAAATCTTCCTTCGCTCTGAGCTTAAAAAAGAAAAAACTTCA
CAAAGGCTTTGTAAAGCTTTGTCATGTTGCAGGTAGACCATAATTTTATG
CCACACCTCTTGAGAAAAAATGTAGAAAGGATTTGTATTTGATGAGGTGG
AGAGAGTTGATATTTGAGAGCAAGGTAAAGATTCTTGCGATTCTGCAACA
TTGTCAGTCAATAATTGTTCTCCTTTTTGATAAATACCACCATCAAGATT
CTGAGGGTAGCAATACCTCAAAGAGAGACTTCGTTCATAACACTCGTTAG
CTTTATCATAATTACGTCCCAATTCAAATTGTTGTGCTTGGCGAAATAAT
TGCAAACACTTCTTATTATCATCAAATTTTTCCTTAGGAGGGCAGAATCC
AAGCTTTTTTCCAACCCGCTCAGTCATAATATCAGTTTTGATTACAAACT
TGTAACTCTTTGGTGAAAGCTTGCATCCTTCATGAATCAGATTTTGTTTG
AAAATAACTGCTTGCCCTGTCTTTGGTGCAATAATATGGCAGTCATATCC
TGAACATAAACTTCTCTTTTACCTCCTCCTTTATAGTGCAGCCTTTAGTG
ACAATTGTTGTGTCTTTTGGAACATAAAATTTTGTCTGACCGCCACGAAA
ACCATCATTCAAATAGATGAGCATAGTATACAACGATCTTTTGTGACCAT
TGGGACAAAATGAAGCATCTCTATGAGGAGCAAAAAATTCTTTCTTTTTT
CCGCCATATCTATTCACTCAGGCGCATTGCTTGATTGACACAAGATAACT
TCCAATGGCCCCTAGCTGCATCAAAGCCAAATGGATGAATACGAGCATCT
CCGATTTGCTTTTCAAATTGGTTGGAAATATTATCCCAAAGAAAATCTGC
AAATTCTTCATCAAATAAAACTAATCGAGAATTCTTTCTTGTTTCATCAT
AGCAACATAACTGCAAGTTTAGATTTTCAGCTTTACCAATAATTTCTTTG
CATTGAGGTTCAGTCAACAAATTCTTCACCAAATAAATATCATTTGCAAT
TTTTGTCAATTTCTATGTCTGGTTTAACATCTGCCATCTTGTCATCAAGA
AATCGAAAATCTTTTCCCCAATCAGTTGTACGTAAAGAAGTTTCTGCCAG
GAGATATGGTTTTCCAATCATGTCAGGCGTGATGTTATTTCTTATTATGT
TTTTCACATTGTTGTACATTTTGGTTTCTTCTATCTAAAATATAAATATA
CATTATTAAAAAAGACCCAAAGACATTCAAATTCTCTCTTGTAGAAAAAA
TAAAAGTTAAAATAGTACCTCGAGACCATGCATCCTTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047109-exon-scaffold_121-1575043694:7557..10037 | TCONS_00047109-exon-scaffold_121-1575043694:7557..10037 | Clytia hemisphaerica | exon |
| TCONS_00047109-exon-scaffold_121-1575043694:3946..4664 | TCONS_00047109-exon-scaffold_121-1575043694:3946..4664 | Clytia hemisphaerica | exon |
| TCONS_00047109-exon-scaffold_121-1510915933:7557..10037 | TCONS_00047109-exon-scaffold_121-1510915933:7557..10037 | Clytia hemisphaerica | exon |
| TCONS_00047109-exon-scaffold_121-1510915933:3946..4664 | TCONS_00047109-exon-scaffold_121-1510915933:3946..4664 | Clytia hemisphaerica | exon |
| TCONS_00047109-exon-scaffold_121-1491911889:7557..10037 | TCONS_00047109-exon-scaffold_121-1491911889:7557..10037 | Clytia hemisphaerica | exon |
| TCONS_00047109-exon-scaffold_121-1491911889:3946..4664 | TCONS_00047109-exon-scaffold_121-1491911889:3946..4664 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_121 | supercontig | scaffold_121:3946..10037 - |
Blast
The following BLAST results are available for this feature:
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