TCONS_00047103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047103
Unique NameTCONS_00047103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047103 ID=TCONS_00047103|Name=TCONS_00047103|organism=Clytia hemisphaerica|type=transcript|length=2656bp
atcaaaagtgAACGAAGTTTTTCAAACTAAACACACAATCCACAACAAAC
ACCCCGATGAAAATAACAGAAAGTCACAGACATCTTTCATgatcaaaact
gaaaataattcattcaaaatgacaCCGCAATATACCACACTCTAAGCCAA
TCCAAATCTTCCTTCACACCGACACGCACAATCACGACAATGGAGACACC
TCACGGTGGAAGTCCGCGATCGCTACACGACCACGATGACGTTTACCAAG
CACGAACACACAACACGGCTGCGTCACCATCAAATCACCGCTTGGCCACT
GACACATTCTCAATAGACAGCTCACATTATGATGAACAGTGTGGCTGGAG
TAAATGCAAACCAAAGAAGATTCAAAAACTGAACAGCCCTAAATGGTTCC
TTTTCTTCTTAGCTGTATTCTCTGTTTCACAAAGTATGATTGTTAACGGT
TTTACAAACGTTGGTTTGGGCACACTTGAAAAGCAGTTCAAACTGACAAG
CAAACAGTCTGGAATGATTGTAGCAGCCAAAGAACTCTCATCCCTTCTCT
TGATTGCTTTCCTCAGTTTCTACGGAAGTTTTGGTCACAAGCCTAAATAT
CTCGGATACGGCGCAATTTCGACGGCGTGTGGTAGTATGTTGTACGTACT
CCCGCATGCGTTGATTGGTAAACATATACCCAAAGGTATGTCTATGAAAA
TATTCCGAAGTCAAGAACTTTGCTCGATCACCTCTATGAATCAAACATTA
AGCGAGGCAAGATGCGAAATGCTGGGAGGTTCTGAATGGTATTACTTGTT
CGTCTTTATCATCGCTAaacttctgattggtgccggaACGGCGCCCCTTT
TCACATTGGGTACATCTTACTTAGATGAGAATGTTAAACCGAAAGTGGCT
CCTGTTTATTTGGGTATTTGGTACGCGTGCACTTCTTTTGGCCCTGGGAT
CGGATTTGTGGCTGGAGGGACACTTTTGAATGTTTACGTTGATCTGATAC
AGcCGCCTGGTTTCGATCTAACTCCGGAGGACCCTCGCTGGATAGGCGCT
TGGTGGCTGGGCCACTTCTTCGgtgccattttgattttcttatcGGCGTG
TGCTTTACTTGCGTATCCGCGCTCCATGCCTGGTGCAAGGGAGATGAGAC
GGCAAGCTATACGCGATGGGACCTTACGTCCGGAAGATAATAGACTTCAA
GGAAAAATCACAGATATTATACCAGCTACATTGactttattcaaaaatat
gACTTTCATGTTTAACACGCTAGCTTTGACTTGTACCATGGTCATATCAA
CCGGCCTTGGCCCGTTTGTTGTTAAATACCTTCAAGCTCAATTCGGTGTT
TCGATTATGAAAGCTGGAATCGCATCTGGAATAGCTCTAATACCGGGCAC
AACTATAGGTATCTTTCTTGGCAGCTATCTTATGCGTCGTATGAAGGGTC
AGAACACGTGCGAAGGTGCCGCAcgctattgtttcattttccaAATGTTG
GCAGTTCTTTCGGTTGCCAGTTTCTTGATACCTGGTTGTGATCGACCCTC
CATCGTTGGAATACATCACGAATATAAAAACAGtaCTATTCTCAACAATG
TGACGTCGTCATGCAATGCGAACTGCGCATGTCACGGTATACAATTCGAA
CCTGTCTGTGGTGTTGATAATCAAACTTATTTCTCACCATGTCACATGGG
ATGTACTCAGAAAATGAATAAAACTTACCACAGCTGCCGATGTTTAGATT
CTCGCTTTTCCGACTGGAACACCAAGCGGTCACCACTCAACTATTCACAT
TCAATAGCATTTGAAGAGCACAGCCTTACTGCAAAGCTAGGAGAATGTGA
TAGGAATTGTCAAAACATGGAACCGTTCTTGTGTGCCATTGTTGTGTTAC
TGATCTTAAACTTTGTCAATGCTGTGCCTGGTAAAATGGTCGTCATGAGG
TGCGTTCCTGACAATGAGCGTGCGTACGCTTTGGGTGTTCAATGGATTGT
TCTCACACTTCTTGGCGCTATTCCTGGTCCTCTCCTCTTCGGTATTTTCA
TCGACAAAACATGTGACCTATGGGAAACGACTTGTCACGGGCAAGGAAAC
TGCTTGGTCTATGATAACAAGATCCTGAGCTATCGTTTAGCTGGAgctat
atttatttttgaagCACTTGCAGCCTTGTGTTATTTCATCTCATGGAAGA
CGTTTAAACCAATGGGTGAAAAAGAAATCGCCAGGAATCTCGATTACATC
ACCAGTACCTCCATTGATCCGGACCCACAGTTTGATACGCAGGCGTTAAA
TACGGAAACACCTGGATCACCGGACTTAACCATTACCACTGACCTGAGTG
ACTCGTATTTATCAATAAATAACGGTGTTTCGAAAAGTCTTCTAGAAGCT
CAGATGGATCGCCCGGATTCTGGTATAGAGTGACTCTAGTTAGACGGAGC
TGCTTGGTGTATGTTCCTTTATTTGGAAAACTAGGATTTGTTTCCTGGAG
TGGAATGCACTGCTGTTATAGGGTTTGATGGTTGTTACTGAACCACATGG
GTGGTTGGGGATATAATACCCTGTCAAAGGTAAGGCAACAATAGTATATC
TAACAtggtattttttatattttgattgtTATTTATATATTCAAACAAAT
TCTAAN
Run BLAST on NCBI

transcript from alignment at scaffold_121:17135..28467+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047103 ID=TCONS_00047103|Name=TCONS_00047103|organism=Clytia hemisphaerica|type=transcript|length=11333bp|location=Sequence derived from alignment at scaffold_121:17135..28467+ (Clytia hemisphaerica)
atcaaaagtgAACGAAGTTTTTCAGTAAGACTGATACTTTGTGTGTTTTT
ACTGTATATTATTCGAGAATCCTCAACACTTGAACCTTTTATGTTTCGGA
TTAGCTCGGTCGGAAATGTTTTGCAGACATTCTTGGATTGATGATAGAAT
TTGTATTACGTATTGGGTAATCTCAGTTATTGCTCATTGGAAATAAGAGC
AATGTACTGGAAAGTTCTTATTTCTTTATCTGAATTGAACTGAGCCAGGC
Tcaagcattattcttatttttatcaattctgagcctcattgttcttataa
aggagAGAGTATACGagtcttttttgtgttttttggtCACTTTGAGCTTT
TAAGTCCATAGAATATGGTAATGGTGAGATCCACggaaatttgaccaaaa
tacacgtttttttataagaatgtgcCTTTCCaattcatcataaatattct
taacttattgGTGAAAAtccatcctaaaatattcttacggtattcttaga
tTTGGATCCAAACCCAGCCAAAATCCCAAAATCTAGCATTAATACATACC
TCAAGTTAAAGTTTGGTATTTTGGGGGAACCTTTTAGCAATGCTCTACTC
TAGAATGCTCTagaaatggcattcttaggttaagttgctaaattccatga
tggtggtattcttaccatattcttaattttttggccattttcatcatgga
cattttcttataaagtgtattcttatcaaaaaagCATGTAGAACATTTCT
GTTGATTTTATTCCATTGATGTTTAGAATGTAGTTCAATGACTTCAATAA
TATAGAGTGAGTGTTTATTTTTGGTGgaggttttttttaagaatacgAAT
ATACATTCTTTATCAGTTTATACTAGTCTAAATTACTTATTACACAAAAG
AAGCAGTTATCAAAGAAACTACCTCGTAGTTTGCACCAACCTGTGGAATT
GCTTTTCAGACTGTTTCCTTTAAAAGTCAGCTCCATGAAACGAtccacgt
ttttttataagagtaNGTTTATACTAGTCTAAATTACTTATTACACAAAA
GAAGCAGTTATCAAAGAAACTACCTCGTAGTTTGCACCAACCTGTGGAAT
TGCTTTTCAGACTGTTTCCTTTAAAAGTCAGCTCCATGAAACGATCCACG
TATGTTCAActtcataagaacataaggcttaagTAGCCAAAATctttaga
acaagttaagaacattttaaggctttgtcgGCTCTTATACAcctgttttc
ttaggaaaattgataaaaatactcaaaaaatgctgaaaataagaacatgt
taagaacatttttaggcttgaaacccaaaaagttgaaagaaacatctgaa
ggcttcaaaaatttaggaCGTGTACTCTTTAATGGGCAATTTCTTATATA
AAATAACAAGTGAATGTGTTTGCTTATGAGGTTTTGTCACATAAATCCTA
TTACAGTGACTCTTAATGATGTTATTTGGTTTTGTTCGAGTAGCTCTGGA
TTAAGAGATATGTATCTTCTCTTCTCCACATACGTAAGACGTCATCTGAT
TTTGACAATCTTTATTATCCCTATGCGTGACGTCAATTCGAGTAAATCTA
GTCACGAAAGATTTTGGAACTAAGTTGTACGTTGTATTAGGATAGGACGT
AGTACGTCGTAGTAGGGCTAATAAGacgtattttgttttgttttagggAC
AGTATATATCTATTGCGTTGTATTTGAGTTAGTACTACGCCGTACGTTGT
ACGAAGAACGTTTTGATAGGGTTAGTActtaaaaggttaaaaaatttgtt
cttatgaaattgttctagTTTAAAGACAGTGTATTTTAAGGTTAATTTTT
CCAGGAAACCCGATTTAAAGGATTGGATAATCTCTCAACAAAATAATACT
GACTTTAAGAGAGAAAATCTTGTACAGATCTTTTCCTCGATAAGAAAATT
GTTGTCAATAGTTACTTATTTTGCACACCTATTCGCGTAGTGTAAGtcat
aaatatttcaataaagttgaaaattctctttcttgaaaatttcaaagatg
CCAGGGACTTTGTGTGATAAGTAATGTGCTGTATTGTTTTTAAAGAGAAT
TTTAGACAAACAATCGTTTTAAAAAATCGTTATGGAATCTCCAATGCTTT
AGCTAAGCTCCTTACTGCATGATCCTTGGTAAGAGGACTTGCTTGAAGAT
GAAATAATTATACGAAATCGATTATCCTGTATGGGAATCTATTATGATTC
CAAATATTCTACTTGATGTACAGATTGCTGTTTTGAAAACTGTTATTAGT
GCTCTCAGTCTTTCCTTAGGCCAGTATTGGCTTTCTTTCAGAAATCAATG
AGTCAAAATACACGTTTTATGTTTATACACTTTTGATTACCTTTTCAACA
AAGTTATAAAACTAGTCACTTGaacatattttttaaacatagCTATTTGT
TACTTTCTCTCTGTTGTAAGTTAACTCAAAAGTTATAAGTGACCATGCTG
AGTctaattttaattattttttcgtttgATACAAACATTTATTTAAACAG
TCAAGACCCTCACGTGATCACCTAAAGCTTTTCTCTGACATTATCTATTC
ATATCAATCAGATAGGGGTTTTCCTCTGTATATTAAAAAGTTgaattgtt
tttaaatatttgataTCTTTGAAAGTTCGTTTCATCGTGTCAAACagtgt
tgaaataaaaaaaaaagaaaaaagtattcagtttctttgcttgttcgtCC
TTTCAGGagataacttttttttctgtgatagctTTGTGAGAAATGTGATG
TTTATGGAAAATTCATGCATAGAACTGTTCAAATCATTTCTGTTCTCGGC
CTTAAAGCTCTTTTTCCTACGGTTAGATTTTAATAGTGTCTGTTAAAGAA
GTTAgtgatatattttatttttattttttgtacgTTGCATAATTATGGTT
TTGTCCTCTTCATTTTTCATGCATTTTGGACACTTTTGGAACGTTCGTTG
TAAAATAATCGCTCTGTGTCTGttattacacgtttttattaTGAGGACAT
CCAgaacttttgaagccttaggatgttctaagctttttgagttttaagcc
taaaaatgttcttaacatgttcttatttttaccattttgtgagcattttt
ggaGAATGCTGACTCAGGGCCTTCTGGTTTGTTTAAGTCTTTTTTTTGGA
TTACACAATGCCtttcactgatacaggggtacAGGGGTGAAAATGTCATG
GTAAATTTCGGGAAAAGTCTTACTCAGTTTAATTTCCTTTATAGTCCTTT
ACAATGTTGATGATTAAAACAAGGCTTTTATGCCTTTCCAGACacatggg
gggggggttagTTTATTATATTCtttctcttttgaaaaaattccttaATA
CCTATTTTAAAGTTATATGCATGTGATTTAATACCATTATGACTTCGTGC
CGATTGCTTCTTgcagaaatgtttttttatattaaacGTTAGCACGCGAG
AAGATAATCTATTACTAAAGGTTTTGCAGCTACTTTACCTTCTATATTTT
TGTTTATGATGTCATACTTTTAATCCTATTTGCTATAACACATTTTATTA
GAACAACGTTACAAAGAATAAGgccttataaagtgtattcttataaaaaa
gcgtatgTTGGCACTGCCAAGGCATGTTGTGAAAATAATACAAAAGGCTC
TTTATAACTCTTACACGTTGTTTGAGTTCAGGAAATCTACCCTAAGAATT
GCTACGAAGGCTCTCCCTTTGATAGCCAGAGTACGTAATATACTCTTTAA
TCACTGCACTTATCTATCTTTGAAATTATACTATAGCTTGGAACCTTGGC
CATCCCCTTTGAAGGTGTTTGTATTATTGTATAACCAATCTGTTTCGTGT
GTTTAGTCtgacaatgtttttgtttttatttcGAGATTCACTTTTTATGG
CGATTTCTCTTTTTTACTTTGACCAAATGAcgacacgcgaaaattttctc
ACCGGGCTTTTTCCGTGTCACAATGTTTTTTCTCGTAACAAAACAGGTTT
AAATATGGATTGCACTTTCGCTATTTCTGTTTCCACGGATATAATTTGGT
TTATTTTCCGTTCTTTTAAAGTTTATTACATACACATAGTTTATCATGAT
TGTTATGGATGGTTTTGACTTGTGTATCTTTTTTTTGTCTTGACTAGAAT
ACTGTAGTGTGGACAGTGAATGTATTTTCATGGTTATCGAAGCAGTATTA
ATGTGTTACCTTGATTTCATTCTTCTGTGGAGAGTATAAACTCTTTGTTT
TCTACCCTACAGTACCCGAATTAGTAATTTGAGGCTGAGGCTGAAATTGG
TTTCAAGGTGTATTTGGGATATTGTaaatattgtttttgaattaaagATT
TGCACTAAAGTTTAAAATGAAGTGGAATACGATCCACACgaaaatcttca
gtttttgGTCTGACCACACAAGATGAAAAAAGTTTAGCTGAAAATTTGta
tttctcaaaaacctaaaaattcGCATTtctcaaaaaccaaaaaatacgca
tttctagaatttttcaatGCTTAAACTTTGAATCGAATTATCTCGGCTTT
GGTGATAGCTAAACCCTTAATGTttggtaccgttggaaagctctttcaaa
GCTCTATATCTTTTCAGATTACCAGTCCTGAATCAAAACTACCGGCAGCA
GAAAATCTCGTTCCCGAGAGAACAAAGTTTCGCTGGTGGGACGTCAAGGA
ATTAAAAGTGGAAACTTTTGTTGGTTTAGTGCCTAAATTCATCCCTGTTA
CCCGGACTGTACCTTTTACTTTCAAAGGGGAAATTtgccccaattttttt
tttttaaggcaATTTAAGTGAGTTGTTTGAGTTGTACGTAGGCACTCTAA
AATAGCCATTGAGGACCGCCATTTTGAAGGTTGGGGAGGATTAGACACCC
TTCTGtcgttttgaaaatttacaggtACATTTTCTCACAAAACTtttaat
atcaaaataaaaggtaCAAAGACAGAATTGCAAATGTCCATTTCAATTGG
ATCAAAGTCAAAACCAAACCAtacgaaaaaaagtttttttaccatGGTCT
TCATTATACTTTAAAAATTGGGAGAAGGGTCCCTCTCCACAAAGAGGCTC
AAATTTTACGATGGACATGAAAAACGGAAAAAATAtgtctattttgaaaa
aagaaactggAGCTTatgaaatttgaattatttatcTTGCTCGTCGTCCT
TcatcatcaaatttttcattattttattatgTTGTTGTATTGACTACCAT
AAAAGAAAGCGCTCCTTGTCCATAGTCTctcactttattaatttttcaac
AGCTTGTAAACTTAGTTATTGGTCGCGAAGAAGTTCATGAGAATTTTCTT
GCAAAAAAATGATGCAGTAAAATACGTAGGCCGtctgttttgatgttttg
taatttcctttcaaattgaaaataattgtttGAGTTTTTCAAATTATTCG
ATACGCGGTGATTTTGTCTAACGCAAAAAGTAAAGTTTTGTATCTAATCA
CGTCTCAAAGTAAGAGGCCCTGAAGGCCCAGAATGAAATATGGAGAGGCA
TAGAGATAAGTTCTCCTTGATCATAAATATACCTTTTACAcacccatttt
tttttttttttttaatttcctcaCCATAACTTATCAGGCTTATCAATTTT
CTACATTGAACTGTATTTTACCTATGTTACATGTTTATTTTCGAGGGAGA
AAATCTGTCTCCGTTTGTTATCTGATTCTAAATAAGCTTCGTGTGAGAGC
CCATACACAAGGACAATGTATCAACTTTCAacttgtcaaaatatttaaaa
atgtttcaataatgttttgaaattttctctcaTATACAGTATCACTGTTT
CGCTCGTCTAAAGGTCGTGCAGTATGTTTGTCAATTTAACATATAGTTTG
TTCACAAAGGCACGTGATTTTTTGCAGGGGAATAGAATTTAACTAATTCA
AAAGTTAGAATGGGTGCTCTATAATTTTTGATGTtgccttataaaaaagt
gtagatTGGAACCGTTCTGTTAGACCATTTTGTTTTCCAGACAATTTTGA
CAATCTTTTTTGTCTAAATGACTCACTCCGGACATGAAGATCTTGAAATA
TTGGTTTTTAAATTCTTAGGTTTCCAGTGGGTTACCCCTCacttagaaat
ttgaaaaatctttgcaAGATTTTGTAATCTTCTGTTTGTGCAGTACACAT
AACTTTTATCAATTTCAATCTCAGAACTAAACACACAATCCACAACAAAC
ACCCCGATGAAAATAACAGAAAGTCACAGACATCTTTCATgatcaaaact
gaaaataattcattcaaaatgacaCCGCAATATACCACACTCTAAGCCAA
TCCAAATCTTCCTTCACACCGACACGCACAATCACGACAATGGAGACACC
TCACGGTGGAAGTCCGCGATCGCTACACGACCACGATGACGTTTACCAAG
CACGAACACACAACACGGCTGCGTCACCATCAAATCACCGCTTGGCCACT
GACACATTCTCAATAGACAGCTCACATTATGATGAACAGTGTGGCTGGAG
TAAATGCAAACCAAAGAAGATTCAAAAACTGAACAGCCCTAAATGGTTCC
TTTTCTTCTTAGCTGTATTCTCTGTTTCACAAAGTAAGAATAGTTGCTTT
CTTATACTTTATTCTTCATAAGAGTAATGCTTTAAATTTTTCACCTCAGA
TTTTTCCTAGTAGAAAGGGTATGCTCGAAAGAGCCCCCTCAGCGGTTTGC
GTAATGACTAAATTGGGTCTTTTTTAGCCTGATGGCAGGATCTACGATTT
CAAAAAGCGTGGTGCGCGATTGATGAGAGATTTTCTGATAAGGGAATATT
TTTAGCGTGATGGGGTGAAGGCGTGATTAGAACTTTTCTTGGCGTGATGG
CGTAACCAGGGACTCCGCTTGGGGACCTCTCAAAACATCCCAAActtata
aaaagattttcatacttCGTTTTAATGAAATGTAAAATggcttcgaaaaa
ttaacatgGTGTTCAGGTCCAACTTGATTTAACATCATCATTGAAATAAC
GCTGTGTGTCAACTGGGTCCCTAATAGCTTTATCTTTTTCTATTTCAATT
AGGTATGATTGTTAACGGTTTTACAAACGTTGGTTTGGGCACACTTGAAA
AGCAGTTCAAACTGACAAGCAAACAGTCTGGAATGATTGTAGCAGCCAAA
GAACTCTCATCCCTTCTCTTGATTGCTTTCCTCAGTTTCTACGGAAGTTT
TGGTCACAAGCCTAAATATCTCGGATACGGCGCAATTTCGACGGCGTGTG
GTAGTATGTTGTACGTACTCCCGCATGCGTTGATTGGTAAACATATACCC
AAAGGTATGTCTATGAAAATATTCCGAAGTCAAGAACTTTGCTCGATCAC
CTCTATGAATCAAACATTAAGCGAGGCAAGATGCGAAATGCTGGGAGGTT
CTGAATGGTATTACTTGTTCGTCTTTATCATCGCTAaacttctgattggt
gccggaACGGCGCCCCTTTTCACATTGGGTACATCTTACTTAGATGAGAA
TGTTAAACCGAAAGTGGCTCCTGTTTATTTGGGTATTTGGTACGCGTGCA
CTTCTTTTGGCCCTGGGATCGGATTTGTGGCTGGAGGGACACTTTTGAAT
GTTTACGTTGATCTGATACAGGTAAGGCTATATGTAAAGGTTCTTTTGTT
ATTACTTGTTTGAGAAAAGAAGACGACTTGTAAATTCCATACTTAAAGTT
TCCTTCCACAGAATTCCAATCTTCATTTGACAATAATCGTAAATTTCGCT
GAAGATTGTGATCCTATATGACATGAAACTTTTAGTGTGAAATTTACAAC
TTTTCTTCTTTGCACAAAGCTCTTTTATCAATAACGTTATCCCTCTTATT
GTTATTCGCTAACGAAAGAAGCATAACCTTTTGTAATCACGTCAACAATa
gcttctttctttttttcaattctttgggACACTCATCCCGAATTTTCCAT
TTCTTACTTTATgagggtattgaaaaaattgtctaattcttcgtTTTTTA
TTCCTATTTGGTCTCTTCTGCTTTACTCTAGTTCATTAATCGCTATAATT
CACATTACATTCTATGTCCCTTTCGTATACTTttatattcttcttttttc
agcCGCCTGGTTTCGATCTAACTCCGGAGGACCCTCGCTGGATAGGCGCT
TGGTGGCTGGGCCACTTCTTCGgtgccattttgattttcttatcGGCGTG
TGCTTTACTTGCGTATCCGCGCTCCATGCCTGGTGCAAGGGAGATGAGAC
GGCAAGCTATACGCGATGGGACCTTACGTCCGGAAGATAATAGACTTCAA
GGAAAAATCACAGATATTATACCAGCTACATTGactttattcaaaaatat
gACTTTCATGTTTAACACGCTAGCTTTGACTTGTACCATGGTCATATCAA
CCGGCCTTGGCCCGTTTGTTGTTAAATACCTTCAAGCTCAATTCGGTGTT
TCGATTATGAAAGCTGGAATCGCATCTGGAATAGCTCTAATACCGGGCAC
AACTATAGGTATCTTTCTTGGCAGCTATCTTATGCGTCGTATGAAGGGTC
AGAACACGTGCGAAGGTGCCGCAcgctattgtttcattttccaAATGTTG
GCAGTTCTTTCGGTTGCCAGTTTCTTGATACCTGGTTGTGATCGACCCTC
CATCGTTGGAATACATCACGAATATAAAAACAGGTAAATGTCGGAAGATT
TGCGATTCATTTCTTTCTAAGAGCCCTCAATAGAAGGgtttttttcaaac
agattATTCAGAAAAtcttataaacatttaaaagaccagatagttgctat
gacggaattagacaaggtatgtcggCATTACACGAAGGTACGGTACATTT
TTGAACAATGTAcattacagaatttcaaaattgaacTATGAGAATAATTT
TTTAATGCCCTGAAGTTAGCCGAAGAAATACTCTTTTAGAAGAACGTCCA
CAGTAAAATAAATCACCAGTCTGTATTGACAAAGCAAAAAAAACGCTCAC
GACACTCAAAtctcaaataaaataaacaaagtttccctgaaacaaagttt
taattaccaaataaaaagcaaaatcttcatttttcatattttcagtaCTA
TTCTCAACAATGTGACGTCGTCATGCAATGCGAACTGCGCATGTCACGGT
ATACAATTCGAACCTGTCTGTGGTGTTGATAATCAAACTTATTTCTCACC
ATGTCACATGGGATGTACTCAGAAAATGAATAAAGTATGCTGActgtatt
ttctttctttttcaaccaTTTTACTGAAACTAAGAATTgatcatctattt
tgaaaaagtgctgAACATCATtataatttattcaaaaaatacaTTATGAG
TATTAGCTTAACCAGCCGCTCTGCACCAGAACTTACCTTACTTTTACTGT
TCGATACTTTTCTTCTAGGTCGGTCACTCACAATTTCATTCATCTTTCGT
TGCTTATTGCATCTGTTTCTTCTAGACTTACCACAGCTGCCGATGTTTAG
ATTCTCGCTTTTCCGACTGGAACACCAAGCGGTCACCACTCAACTATTCA
CATTCAATAGCATTTGAAGAGCACAGCCTTACTGCAAAGCTAGGAGAATG
TGATAGGAATTGTCAAAACATGGAACCGTTCTTGTGTGCCATTGTTGTGT
TACTGATCTTAAACTTTGTCAATGCTGTGCCTGGTAAAATGGTCGTCATG
AGGTACGCGAAGAATTTTAGCGATAATTTAGTGTTGTATAGATGTTATCG
ACGTGTGATGGATGACTTTTTACGTTAGTAGATAAGGGTGTTGAAACATA
GATGATGTTAGCGTCCGTAAAGCTTTATTTGTGTGTGGAGAAAATATGAT
GCTAGAGGTAAAGCTGTTCATGCATCATGGCTGTACAACAAACGCGGTGG
GATTGATGAGTTATACTACAAGATTACAGCTACTCCCGAGAAAAAACTCC
CCTCTTTGCGTCTGCTCCTGATATGAAACTCGAGATAAAATAGTTTAGTT
GAAGCATTTTTATACGGATACCATGTGTACTGTAGCTGGTTTCTTTATCA
CTCTTAAAGCAGTtatcttcttaaaaaaaacattacctTTTAAGAAACCT
TATCAGTtccaaaactttatttttacgATCAAAAAGCTGGCTGCCTCTTA
TCTGTACAACTATCTAGATTTCATGCCCTTTCCTAAATACCGAATTTCAG
AATCTAGCTCTAACACCTAATTCATAACTTCTCTTCCAATTTCTCATCAT
AACCAGGTGCGTTCCTGACAATGAGCGTGCGTACGCTTTGGGTGTTCAAT
GGATTGTTCTCACACTTCTTGGCGCTATTCCTGGTCCTCTCCTCTTCGGT
ATTTTCATCGACAAAACATGTGACCTATGGGAAACGACTTGTCACGGGCA
AGGAAACTGCTTGGTCTATGATAACAAGATCCTGAGCTATCGTTTAGCTG
GAgctatatttatttttgaaggtAAGCATAAATAATAGCTTTTCATGTAC
CATGATCTGTTATCTTCTACATTCCAATTTTTAATATGCCTAAGTCCTAT
CGCCACCCTCTCCTCGGTGACGTAATTTTGTGACAGTAAATGGTGGAAAT
AACTGAGTAACTTTGATTTGTTTGAGAAGTTCAATTTTTGTATTATCTTT
TTGTAAATGTTTTTGTACACTTTGCTCTATTATATcattgcctctgtttt
ctttgGTTCTGTTGTTTGCAAAAGTCCTTCCTTTTTTTTAGCACTTGCAG
CCTTGTGTTATTTCATCTCATGGAAGACGTTTAAACCAATGGGTGAAAAA
GAAATCGCCAGGAATCTCGATTACATCACCAGTACCTCCATTGATCCGGA
CCCACAGTTTGATACGCAGGCGTTAAATACGGAAACACCTGGATCACCGG
ACTTAACCATTACCACTGACCTGAGTGACTCGTATTTATCAATAAATAAC
GGTGTTTCGAAAAGTCTTCTAGAAGCTCAGATGGATCGCCCGGATTCTGG
TATAGAGTGACTCTAGTTAGACGGAGCTGCTTGGTGTATGTTCCTTTATT
TGGAAAACTAGGATTTGTTTCCTGGAGTGGAATGCACTGCTGTTATAGGG
TTTGATGGTTGTTACTGAACCACATGGGTGGTTGGGGATATAATACCCTG
TCAAAGGTAAGGCAACAATAGTATATCTAACAtggtattttttatatttt
gattgtTATTTATATATTCAAACAAATTCTAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030030XLOC_030030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047103-exon-scaffold_121-1491911889:17135..17158TCONS_00047103-exon-scaffold_121-1491911889:17135..17158Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1510915933:17135..17158TCONS_00047103-exon-scaffold_121-1510915933:17135..17158Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1575043694:17135..17158TCONS_00047103-exon-scaffold_121-1575043694:17135..17158Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1491911889:23409..23817TCONS_00047103-exon-scaffold_121-1491911889:23409..23817Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1510915933:23409..23817TCONS_00047103-exon-scaffold_121-1510915933:23409..23817Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1575043694:23409..23817TCONS_00047103-exon-scaffold_121-1575043694:23409..23817Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1491911889:24287..24855TCONS_00047103-exon-scaffold_121-1491911889:24287..24855Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1510915933:24287..24855TCONS_00047103-exon-scaffold_121-1510915933:24287..24855Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1575043694:24287..24855TCONS_00047103-exon-scaffold_121-1575043694:24287..24855Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1491911889:25337..25917TCONS_00047103-exon-scaffold_121-1491911889:25337..25917Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1510915933:25337..25917TCONS_00047103-exon-scaffold_121-1510915933:25337..25917Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1575043694:25337..25917TCONS_00047103-exon-scaffold_121-1575043694:25337..25917Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1491911889:26330..26468TCONS_00047103-exon-scaffold_121-1491911889:26330..26468Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1510915933:26330..26468TCONS_00047103-exon-scaffold_121-1510915933:26330..26468Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1575043694:26330..26468TCONS_00047103-exon-scaffold_121-1575043694:26330..26468Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1491911889:26710..26936TCONS_00047103-exon-scaffold_121-1491911889:26710..26936Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1510915933:26710..26936TCONS_00047103-exon-scaffold_121-1510915933:26710..26936Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1575043694:26710..26936TCONS_00047103-exon-scaffold_121-1575043694:26710..26936Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1491911889:27491..27705TCONS_00047103-exon-scaffold_121-1491911889:27491..27705Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1510915933:27491..27705TCONS_00047103-exon-scaffold_121-1510915933:27491..27705Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1575043694:27491..27705TCONS_00047103-exon-scaffold_121-1575043694:27491..27705Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1491911889:27976..28467TCONS_00047103-exon-scaffold_121-1491911889:27976..28467Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1510915933:27976..28467TCONS_00047103-exon-scaffold_121-1510915933:27976..28467Clytia hemisphaericaexon
TCONS_00047103-exon-scaffold_121-1575043694:27976..28467TCONS_00047103-exon-scaffold_121-1575043694:27976..28467Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_121supercontigscaffold_121:17135..28467 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37396	3.47324	5.25117	1.55763	0.00165563	1.30684	0.125871	2.42478	7.70358	3.8445	4.58389	5.71917	8.8294	9.01619	0.726087	5.49018	10.159	12.9796	16.0587	14.7776	11.8135	9.31178	8.86732	5.63152	1.68478	7.98553	12.7977	12.7108	9.19155	9.09154
Blast
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BLAST of TCONS_00047103 vs. Swiss-Prot (Human)
Match: SO4A1 (Solute carrier organic anion transporter family member 4A1 OS=Homo sapiens GN=SLCO4A1 PE=1 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 2.094e-106
Identity = 216/670 (32.24%), Postives = 340/670 (50.75%), Query Frame = 1 
Query:  340 CGWSKCKPKKIQKLNSPKWFLFFLAVFSVSQSMIVNGFTNVGLGTLEKQFKLTSKQSGMIVAAKEXXXXXXXXXXXXYGSFGHKPKYLGYGAISTACGSMLYVLPHALIGKH---IPKGMSMKIFRSQELCSITSMNQTLSEARCEMLGGSEWYYLFVFIIAKLLIGAGTAPLFTLGTSYLDENVKPKVAPVYLGIWYACTSFGPGIGFVAGGTLLNVYVDLIQPPGFDLTPEDPRWIGAWWLGHFFGAILIFLSACALLAYPRSMPGA------REMRRQAIRDGTLRPEDNRLQGKITDIIPATL-TLFKNMTFMFNTLALTCTMVISTGLGPFVVKYLQAQFGVSIMKAGIASGIALIPGTTIGIFLGSYLMRRMKGQNTCEGAARYCFIFQMLAVLSVASFLIPGCDRPSIVGIHHEYKNSTILN---NVTSSCNANCACHGIQFEPVCGVDNQTYFSPCHMGCTQKM------NKTYHSCRCLDSRFSDWNTKRSPLNYSHSIAFEEHSLTAKLGECDRNCQNMEPFLCAIVVLLILNFVNAVPGKMVVMRCVPDNERAYALGVQWIVLTLLGAIPGPLLFGIFIDKTCDLWETTCHGQGNCLVYDNKILSYRLAGAIFIFEALAALCYFISWKTFKPMGEKEIARNLDYITSTSIDPDPQFDTQ 2292
            CGW    P  +Q LN+PK  LFFL   +  Q M VNGF N  + +LE+++ L S QSG+I ++ ++++ L + F+S++G  GHKP++LG+G +    GS+++ LPH   G++   +  G+         +C+    + T   +R          Y  VF++ + L G G  PL+TLG +YLDENVK   +PVY+ I+Y     GP  G++ GG LLN+Y ++ +    +LT E P W+GAWW+G        F +A  +L YPR +PG+      R      ++D +     N   GK    +P ++  L KN TF+   LA      + TG+  F  K+L++QF +S  +A    G  ++P    G FLG + + +++ + +     ++C    ++++L +  F +  C    + G+   Y  S +     N+T+ CNA C+C    + PVCG D   YFS CH GC           K Y  C C+    S          + H+ A          G+C   CQ     L  I V++   F++++P     +RCV D +R++ALG+QWIV+ +LG IPGP+ FG  IDK C LW+  C  QG+CLVY N  +S  +     +++ L  L + I+   +KP+ E         + S S  PD   D+Q
Sbjct:   86 CGWWAFAPPCLQVLNTPKGILFFLCAAAFLQGMTVNGFINTVITSLERRYDLHSYQSGLIASSYDIAACLCLTFVSYFGGSGHKPRWLGWGVLLMGTGSLVFALPHFTAGRYEVELDAGVRTCPANPGAVCA----DSTSGLSR----------YQLVFMLGQFLHGVGATPLYTLGVTYLDENVKSSCSPVYIAIFYTAAILGPAAGYLIGGALLNIYTEMGRRT--ELTTESPLWVGAWWVGFLGSGAAAFFTAVPILGYPRQLPGSQRYAVMRAAEMHQLKDSSRGEASNPDFGKTIRDLPLSIWLLLKNPTFILLCLAGATEATLITGMSTFSPKFLESQFSLSASEAATLFGYLVVPAGGGGTFLGGFFVNKLRLRGS--AVIKFCLFCTVVSLLGILVFSL-HCPSVPMAGVTASYGGSLLPEGHLNLTAPCNAACSCQPEHYSPVCGSDGLMYFSLCHAGCPAATETNVDGQKVYRDCSCIPQNLSS--------GFGHATA----------GKCTSTCQRKPLLLVFIFVVIFFTFLSSIPALTATLRCVRDPQRSFALGIQWIVVRILGGIPGPIAFGWVIDKACLLWQDQCGQQGSCLVYQNSAMSRYILIMGLLYKVLGVLFFAIACFLYKPLSESSDGLE-TCLPSQSSAPDSATDSQ 717
The following BLAST results are available for this feature:
BLAST of TCONS_00047103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SO4A12.094e-10632.24Solute carrier organic anion transporter family me... [more]
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