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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047080 ID=TCONS_00047080|Name=TCONS_00047080|organism=Clytia hemisphaerica|type=transcript|length=646bp
AGTGATCCTTGTATTCTTGTGACTTCTGAGCAACATGATGTAAAGTTTGT
ATGCATAAATCAATGAGAAATGTAAGAAATTCATGGTTAGTATAGAAGCC
CACATGATGACATCACGTGTTTTAGCGCTTTTCTGTGTAAAGTAAATGGC
GGATAAAGCTGCCAGTAAAAGCACTGAGGTGAAAGATGAATAAATAACAT
GAGTAGTTTCCTTGAAATGTGATGGTAGGTGTCGAGCCCTGACGGCTTGT
ATGCCATTGGCTAGAACTAGAAGTAAAACGTAAACCATTTGGATGATGAT
ATGATTGTTTTTAGTGCAAGTGAGTTCTTGAATGTTTTCGGCGTCATTGC
GAATGGTTTTAGGCTTGGGAACACCATTGTAGAATGTTAAAGCTAGCAAT
AATATACAGATTAGTAGCGATGTACCGACGATAAGCCACTCCAGAAATCT
GATTGCCAACTTTTGTTTCCTAGAATGCCTTGTAttcgaatgaaaaatga
tatgCAGCTTTTGCGTTTTGGCTAGATTGACAGAGATAGTTGCTGTGAAA
CAAATGCCAACGATGATTGGTTTTGAAATGCATTTCAAGTGCGTAGGTTC
TTCAAGAAACAGATAAGGTGGTATAGTTGCCAGTAGGAAGTGTCCG Run BLAST on NCBI protein sequence of TCONS_00047080-protein >TCONS_00047080-protein ID=TCONS_00047080-protein|Name=TCONS_00047080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
GHFLLATIPPYLFLEEPTHLKCISKPIIVGICFTATISVNLAKTQKLHII
FHSNTRHSRKQKLAIRFLEWLIVGTSLLICILLLALTFYNGVPKPKTIRN
DAENIQELTCTKNNHIIIQMVYVLLLVLANGIQAVRARHLPSHFKETTHV
IYSSFTSVLLLAALSAIYFTQKSAKTRDVIMWASILTMNFLHFSLIYAYK
LYIMLLRSHKNTRIT Run BLAST on NCBI transcript from alignment at scaffold_120:45458..46103 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047080 ID=TCONS_00047080|Name=TCONS_00047080|organism=Clytia hemisphaerica|type=transcript|length=646bp|location=Sequence derived from alignment at scaffold_120:45458..46103 (Clytia hemisphaerica)
CGGACACTTCCTACTGGCAACTATACCACCTTATCTGTTTCTTGAAGAAC
CTACGCACTTGAAATGCATTTCAAAACCAATCATCGTTGGCATTTGTTTC
ACAGCAACTATCTCTGTCAATCTAGCCAAAACGCAAAAGCTGcatatcat
ttttcattcgaaTACAAGGCATTCTAGGAAACAAAAGTTGGCAATCAGAT
TTCTGGAGTGGCTTATCGTCGGTACATCGCTACTAATCTGTATATTATTG
CTAGCTTTAACATTCTACAATGGTGTTCCCAAGCCTAAAACCATTCGCAA
TGACGCCGAAAACATTCAAGAACTCACTTGCACTAAAAACAATCATATCA
TCATCCAAATGGTTTACGTTTTACTTCTAGTTCTAGCCAATGGCATACAA
GCCGTCAGGGCTCGACACCTACCATCACATTTCAAGGAAACTACTCATGT
TATTTATTCATCTTTCACCTCAGTGCTTTTACTGGCAGCTTTATCCGCCA
TTTACTTTACACAGAAAAGCGCTAAAACACGTGATGTCATCATGTGGGCT
TCTATACTAACCATGAATTTCTTACATTTCTCATTGATTTATGCATACAA
ACTTTACATCATGTTGCTCAGAAGTCACAAGAATACAAGGATCACT Coding sequence (CDS) from alignment at scaffold_120:45458..46103 >TCONS_00047080 ID=TCONS_00047080|Name=TCONS_00047080|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_120:45458..46103 (Clytia hemisphaerica)
GGACACTTCCTACTGGCAACTATACCACCTTATCTGTTTCTTGAAGAACC
TACGCACTTGAAATGCATTTCAAAACCAATCATCGTTGGCATTTGTTTCA
CAGCAACTATCTCTGTCAATCTAGCCAAAACGCAAAAGCTGcatatcatt
tttcattcgaaTACAAGGCATTCTAGGAAACAAAAGTTGGCAATCAGATT
TCTGGAGTGGCTTATCGTCGGTACATCGCTACTAATCTGTATATTATTGC
TAGCTTTAACATTCTACAATGGTGTTCCCAAGCCTAAAACCATTCGCAAT
GACGCCGAAAACATTCAAGAACTCACTTGCACTAAAAACAATCATATCAT
CATCCAAATGGTTTACGTTTTACTTCTAGTTCTAGCCAATGGCATACAAG
CCGTCAGGGCTCGACACCTACCATCACATTTCAAGGAAACTACTCATGTT
ATTTATTCATCTTTCACCTCAGTGCTTTTACTGGCAGCTTTATCCGCCAT
TTACTTTACACAGAAAAGCGCTAAAACACGTGATGTCATCATGTGGGCTT
CTATACTAACCATGAATTTCTTACATTTCTCATTGATTTATGCATACAAA
CTTTACATCATGTTGCTCAGAAGTCACAAGAATACAAGGATCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047080-exon-scaffold_120-1491911889:45458..46103 | TCONS_00047080-exon-scaffold_120-1491911889:45458..46103 | Clytia hemisphaerica | exon |
| TCONS_00047080-exon-scaffold_120-1510915933:45458..46103 | TCONS_00047080-exon-scaffold_120-1510915933:45458..46103 | Clytia hemisphaerica | exon |
| TCONS_00047080-exon-scaffold_120-1575043694:45458..46103 | TCONS_00047080-exon-scaffold_120-1575043694:45458..46103 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:45458..46103 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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