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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047077 ID=TCONS_00047077|Name=TCONS_00047077|organism=Clytia hemisphaerica|type=transcript|length=2615bp
TTCTAGATGAACTGAAAAATGAACGTGTTAGCTGATACTGAAATAGCGAT
TCAAACATTTTATCATTCACAAGTCGAAGAACAACGCAATGAAGCACACA
GATGGCTGCTTGAGCTTCAAAAGTCACCACAGGCATGGCAAGTCTCATTA
TTATTGTTAGATGCAACAAAACCAACAGAATGTCAATATTATGGTGCAGT
TATATTACACTACAAGATTTGTCATATGATGACAGAAGTTGGTGAAAAAG
AAGTAcaagatttaaaaaacaagCTGGTTTTATTGATATCTTCAGCTTGC
TCAGGACATTACCCATCTGACGAAACATGTAGTAGATTGACGTTAACTTT
TTGGTATCATCTACAAGATGATTTAGTGGATGTCACAGTgactgattttc
aaaaacagtTCCAAGATGCTTTTCTAATGTTGGTTGATGTGTATTTTGTT
AAAGGACAGTACCCACCTGATGAGGTATACAATAAATACACTAGCGAAGA
GAAAGAACTTTTTCGTTGTTATCGTATTGACATTCAAGACACTATCATGT
ATTTACATCACACGTTGAGAGATCGCTGTTTATcttatttcattgaaaaa
ttatcCAGCCTGTTATCATctggGCAATCAACGTGGCAACAATATGAATC
GGTGCTCTATCTTCTATCTGGTACAACGGGCACTATAGACAGCGAGGATA
AAGTCTACATGCCGAACATCATACAACTTCTTAAAAAAGTACCAAACCAT
CCGAAGATTCATGATACCCTGTACACTTTCCTGGGCGGTCTTGGAGAATG
GTTAATTTACAATCAAAACCACATCGAAGATTTGCTACCGTTTCTGTTGT
CTGGTATGAACGAATCTAACAACCAAATCATGAGCTCTTGCAGTTTGTCT
TTGCAAGATATTTGTCAAGAATGTGCTCAATTACTTAGCCGACAATCTGT
TATGAAAGTATTACAAGTCTGCCGTGATACATTACAACGTCCGAATTGCC
CAGCTAAAGTTTGTGTACGTTTATTTCAAGTGGCCGGATATGTGATATCA
GTTCTACCAGCCTCTGAAATACGAAACGAACTTGAGATCATGGTTGCACC
CTTGCTACATAATTTTAAAAGCTTGTTGGGAAGTAAAGCTCAAGGACCTG
AGGTCGTAGAGCAGATCTGCCATTGCTTAAACTGTTTGACAGCTATGTTT
AGGTCTTTGGATCCTTTCGAAGAACAAGCTGTCCATCCCATCTCTATTGT
TTATGAGCAATTATTACAAATTCTACCTTTAATTAAAGGATACTGTACTG
AAGAAATCATCATGCTTGCTGCTACGGGCTGCGTCTCAAAAGCTGTTGAA
ATTGTACGAGAAAAGTTGGCACCTTTTGTCAATGCGACTTGCCAACTACT
TTTTGATTGTTTCAGTGCATGCCCAATGTGGTGTATAATGAATACAGCTT
CCCTAGTTATTGGTATGTTTGGTTCGGAAGAAATCACTTCACAAGCTATC
AAAGAGTTCTTCGTTGCTATTACTACCTCATGTTTGACTTTGAACAGTAC
TGACAACACCGACTCCATGCAAGGTTTGATGGAGATGATGACCAAAGTTA
TCAGAACTGTACCTGAATTTTTCTTTGAGGGAACTGAATTTCAAGAAGTG
TTGGTTAAACGTGCTTTAGAGTTAATGACTTTACAAGAGACTCCTACTAT
TAAGAGTACATGTCACTTTGTTGTTACGTACCTGGGTGTGGTTTCCGTGT
ATGATACTGGCAAAGAAGTGTTTTTGCGATGTGGAAAAGATATTATTGGT
CGGGTTTTACTTTGCATTGGTGTTACTGCTCCTAGATCACTATTAGATAA
CTACTCAGATGTCTTGTTAGCTAttaataaaaacttttcaaccGAAAGCT
CTGTATGGTTAAATGAGTTGTTACTCACAGAGAATTTCCCCACTGCTGTA
CCTACTCAACAACAAAAAGAGTTGTTCCGTAAAATGGTGATTAAAGAACG
GTCAAGTAAGAACCGACTTCGAGAAACTGTTAGAAATTTTGCTTTATTAT
GTCGTGGTTTGATGGGACTGACTTATGTTCAATGAAATATTATAGGAACG
TTTAACAAGAAGAAATCCCTCTTTGAAGGGAAATTGACTAAAATTGCGAT
GGTTTCTGTGCAGTCAGCAGATCTTATtggaaaagttcaattttttgcat
CGCATTCTTCGTTTGAAATGCCGAAAATGTCATATTTCTTGGTACTAATT
TTTGCTTAACTGCATAGGCATTTTATCAAGAGCCGAAGCCTGTATCTTAC
TATGGCTCCTATGCAAGATAATTTCATTTCTCTccaattttatgaatttt
aaccCGATTACTCTCCACCTCTACAATTAAGCAAATAAtagtattttgat
ttttgataaattttgagcCTAACTTTTCATTGTTTATACATACCATGCAT
CTGCATACATTGGTAAGTTTTTTCTTCGGTTTTTGGTATTTATCTTCATG
TTTTAGCTAGAATTAgggtttattttttttctatttttttttctattaaa
tatttttctattttttgttgttttaaataatctattttaatcaaaaagat
tttagaacCTAGAAC Run BLAST on NCBI transcript from alignment at scaffold_120:412342..416691- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047077 ID=TCONS_00047077|Name=TCONS_00047077|organism=Clytia hemisphaerica|type=transcript|length=4350bp|location=Sequence derived from alignment at scaffold_120:412342..416691- (Clytia hemisphaerica)
TTCTAGATGAACTGAAAAATGAACGTGTTAGCTGATACTGAAATAGCGAT
TCAAACATTTTATCATTCACAAGTCGAAGAACAACGCAATGAAGCACACA
GATGGCTGCTTGAGCTTCAAAAGTCACCACAGGCATGGCAAGTCTCATTA
TTATTGTTAGATGCAACAAAACCAACAGAATGTCAATATTATGGTGCAGT
TATATTACACTACAAGATTTGTCATATGATGACAGAAGTTGGTGAAAAAG
AAGTACAAGATTTAAAAAACAAGCTGGTTTTATTGATATCTTCAGCTTGC
TCAGGTGCAAAGTTTGTTAGGACTAAATTATGCTCAATATTTGCAGTCTT
GGTTTTACAAACCATGCAAGAGTCTGAGACATTGCTGACTTGTATCACCC
AAGTCAGCTCTCATTTTCAGAATGTTAGTCCTCAACAATCAAAAGAAGTT
ATTTTACAAATATTGATTGAATTCCCATCACAATTTAAAAACCTGAACAT
GGATTCAAGTAAAAGATTGAAAGCAAGAGATTTTATGGTTCAATTTGCAG
AACCACTGTTATCAATGTGGAATGAAATTTTAGCTGGTAAAGATGTTGAA
ATGAAAAATGAAGCCTTGTCTTGTATGTTAGGTTGGATAGGTTTTGGTAT
ATCTGCACTTGATATTGTGCCTTTAATACCAATTTTATTGAATCATATTG
AAACTGAAGAACTCACTTCAAAAGTGTGTGAAGTCATAAGTGATGCTTTG
ACCGACCCTAGTAGTTACTCTCTAGTCTCAAGTGTATTTGAATCTATAGA
GAAATTATTATTGTTGGAACCTCTCATAGAAAAAGCATTACAGGATGAAA
ATGATGATTTTGCATATAATGTTTGTATGATGATGGCCAATATTGGCGAG
ACGCATTCCAACATCTTAGTCGCTACCAATAACCCAAGCCAACAAATGCT
TGCCCTTCGATTGACCAAATTGATATTAAAATTTTCATCCATGCCAGGAC
ATTACCCATCTGACGAAACATGTAGTAGATTGACGTTAACTTTTTGGTAT
CATCTACAAGATGATTTAGTGGATGTCACAGTGACTGATTTTCAAAAACA
GTTCCAAGATGCTTTTCTAATGTTGGTTGATGTGTATTTTGTTAAAGGAC
AGTACCCACCTGATGAGGTATACAATAAATACACTAGCGAAGAGAAAGAA
CTTTTTCGTTGTTATCGTATTGACATTCAAGACACTATCATGTATTTACA
TCACACGTTGAGAGATCGCTGTTTATCTTATTTCATTGAAAAATTATCCA
GCCTGTTATCATGTAAGTGACCTTTCTTTTTTGCCAAATTTTTTTTATTC
TTTAAAATAAAAAAGCAAGACCAAAGCAAAAGGGATTTTCGAATCTTGCT
ACTAGCCTTTGGAAGGGTTCATTTTTTCTGCAAACCCCTGGTTGGCGGGT
CCTCAAAATAAACAGTAATATCTGGTAACATCATTATATCTAAGCAGATA
AAAACTGGCCAGTTTTTTGAAGAGTTTGGTAATTATGATTACTACCGGGT
ATTTCAAAAAAAAAAGCGTACAAGTTTGAATTGAGGTTGTGAGAAAGCTA
AAAATGTTATAAATCTTAACTTTTTGCCATTAAATGGAGGAATGACTAAC
TTAAAATTTGAGCTTTTGAGCTATCATACTTAATATTTGTTTTGCGCATT
CAAAAGGTATTAAGAAAATTCGAAAAAGTTCTCTTTCGAAAAAGTCTCAT
TTAATTGAGAAAATATGGGATCAAATTCAAGCTTACAAAACACTGAAAAC
AGCTTTTTTTGCTACTTTTTTTAACACCGAAAGTTTTGAGGGCCTTTTGA
ATGTTTGATGATTATCAAAAGAAATAAAAAATATTAATTACAGCCATCAA
AACTTTAAACTGACTGTGTTTTCTTGCACAAAAGGGAAAGAGAAAAAAAA
ATTGATCCACTCTTTTTTCTCAAAAATGACGCTTTTTCAAAAGAGAATTT
TTTCGAATTATCTTCATAACTTTTGAACACGTGAAGCAAATTTAAAGTAT
GATAGCTCAAAATTTAAGTTATTTTACCTCTTTTTAATGGTGAAAAGTTT
AGATTTATAGCATTGTTAGTTTTCTCACAATAATAATTCAAAGTTGTACA
CTTTTGAAACACCAGGTATATTCGTCTGGACACAGAAAAAATGCCCCTTT
TTCCAGTTCTTTTGTCAGTGAAGGAGAAAGATTCTCAACCAAAAGCTTGG
GAAAAGTATTTAGAAAACTTCTGGGAACCTTTCAAGAGTTTGACCAAAAG
CTAAAGATACCTCAAGTTGATCTTTTCATAGTTCAGATCCTTTTTATTTT
TCAGCTGGGCAATCAACGTGGCAACAATATGAATCGGTGCTCTATCTTCT
ATCTGGTACAACGGGCACTATAGACAGCGAGGATAAAGTCTACATGCCGA
ACATCATACAACTTCTTAAAAAAGTACCAAACCATCCGAAGATTCATGAT
ACCCTGTACACTTTCCTGGGCGGTCTTGGAGAATGGTTAATTTACAATCA
AAACCACATCGAAGATTTGCTACCGTTTCTGTTGTCTGGTATGAACGAAT
CTAACAACCAAATCATGAGCTCTTGCAGTTTGTCTTTGCAAGATATTTGT
CAAGAATGTGCTCAATTACTTAGCCGACAATCTGTTATGAAAGTATTACA
AGTCTGCCGTGATACATTACAACGTCCGAATTGCCCAGCTAAAGTTTGTG
TACGTTTATTTCAAGTGGCCGGATATGTGATATCAGTTCTACCAGCCTCT
GAAATACGAAACGAACTTGAGATCATGGTTGCACCCTTGCTACATAATTT
TAAAAGCTTGTTGGGAAGTAAAGCTCAAGGACCTGAGGTCGTAGAGCAGA
TCTGCCATTGCTTAAACTGTTTGACAGCTATGTTTAGGTCTTTGGATCCT
TTCGAAGAACAAGCTGTCCATCCCATCTCTATTGTTTATGAGCAATTATT
ACAAATTCTACCTTTAATTAAAGGATACTGTACTGAAGAAATCATCATGC
TTGCTGCTACGGGCTGCGTCTCAAAAGCTGTTGAAATTGTACGAGAAAAG
TTGGCACCTTTTGTCAATGCGACTTGCCAACTACTTTTTGATTGTTTCAG
TGCATGCCCAATGTGGTGTATAATGAATACAGCTTCCCTAGTTATTGGTA
TGTTTGGTTCGGAAGAAATCACTTCACAAGCTATCAAAGAGTTCTTCGTT
GCTATTACTACCTCATGTTTGACTTTGAACAGTACTGACAACACCGACTC
CATGCAAGGTTTGATGGAGATGATGACCAAAGTTATCAGAACTGTACCTG
AATTTTTCTTTGAGGGAACTGAATTTCAAGAAGTGTTGGTTAAACGTGCT
TTAGAGTTAATGACTTTACAAGAGACTCCTACTATTAAGAGTACATGTCA
CTTTGTTGTTACGTACCTGGGTGTGGTTTCCGTGTATGATACTGGCAAAG
AAGTGTTTTTGCGATGTGGAAAAGATATTATTGGTCGGGTTTTACTTTGC
ATTGGTGTTACTGCTCCTAGATCACTATTAGATAACTACTCAGATGTCTT
GTTAGCTATTAATAAAAACTTTTCAACCGAAAGCTCTGTATGGTTAAATG
AGTTGTTACTCACAGAGAATTTCCCCACTGCTGTACCTACTCAACAACAA
AAAGAGTTGTTCCGTAAAATGGTGATTAAAGAACGGTCAAGTAAGAACCG
ACTTCGAGAAACTGTTAGAAATTTTGCTTTATTATGTCGTGGTTTGATGG
GACTGACTTATGTTCAATGAAATATTATAGGAACGTTTAACAAGAAGAAA
TCCCTCTTTGAAGGGAAATTGACTAAAATTGCGATGGTTTCTGTGCAGTC
AGCAGATCTTATTGGAAAAGTTCAATTTTTTGCATCGCATTCTTCGTTTG
AAATGCCGAAAATGTCATATTTCTTGGTACTAATTTTTGCTTAACTGCAT
AGGCATTTTATCAAGAGCCGAAGCCTGTATCTTACTATGGCTCCTATGCA
AGATAATTTCATTTCTCTCCAATTTTATGAATTTTAACCCGATTACTCTC
CACCTCTACAATTAAGCAAATAATAGTATTTTGATTTTTGATAAATTTTG
AGCCTAACTTTTCATTGTTTATACATACCATGCATCTGCATACATTGGTA
AGTTTTTTCTTCGGTTTTTGGTATTTATCTTCATGTTTTAGCTAGAATTA
GGGTTTATTTTTTTTCTATTTTTTTTTCTATTAAATATTTTTCTATTTTT
TGTTGTTTTAAATAATCTATTTTAATCAAAAAGATTTTAGAACCTAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00047077-exon-scaffold_120-1575043694:416388..416691 | TCONS_00047077-exon-scaffold_120-1575043694:416388..416691 | Clytia hemisphaerica | exon |
| TCONS_00047077-exon-scaffold_120-1575043694:415380..415694 | TCONS_00047077-exon-scaffold_120-1575043694:415380..415694 | Clytia hemisphaerica | exon |
| TCONS_00047077-exon-scaffold_120-1575043694:412342..414337 | TCONS_00047077-exon-scaffold_120-1575043694:412342..414337 | Clytia hemisphaerica | exon |
| TCONS_00047077-exon-scaffold_120-1510915933:416388..416691 | TCONS_00047077-exon-scaffold_120-1510915933:416388..416691 | Clytia hemisphaerica | exon |
| TCONS_00047077-exon-scaffold_120-1510915933:415380..415694 | TCONS_00047077-exon-scaffold_120-1510915933:415380..415694 | Clytia hemisphaerica | exon |
| TCONS_00047077-exon-scaffold_120-1510915933:412342..414337 | TCONS_00047077-exon-scaffold_120-1510915933:412342..414337 | Clytia hemisphaerica | exon |
| TCONS_00047077-exon-scaffold_120-1491911889:416388..416691 | TCONS_00047077-exon-scaffold_120-1491911889:416388..416691 | Clytia hemisphaerica | exon |
| TCONS_00047077-exon-scaffold_120-1491911889:415380..415694 | TCONS_00047077-exon-scaffold_120-1491911889:415380..415694 | Clytia hemisphaerica | exon |
| TCONS_00047077-exon-scaffold_120-1491911889:412342..414337 | TCONS_00047077-exon-scaffold_120-1491911889:412342..414337 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:412342..416691 - |
Blast
BLAST of TCONS_00047077 vs. Swiss-Prot (Human)
Match: IPO13 (Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3) HSP 1 Score: 277.33 bits (708), Expect = 5.937e-79 Identity = 184/665 (27.67%), Postives = 325/665 (48.87%), Query Frame = 1
Query: 193 GAVILHYKICHMMTEVGEKEVQDLKNKL-----------VLLISSACSGHYPSDETCSRLTLTFWYHLQ---XXXXXXXXXXFQKQFQDAFLMLVDVYFVKGQYPPDEVYNKYTSEEKELFRCYRIDIQDTIMYLHHTLRDRCLSYFIEKLSSLLSSGQS--TWQQYESVLYLLSGTTGTIDSEDKVYMPNIIQLLKKVP-NHPKIHDTLYTFLGGLGEWLIYNQNHIEDLLPFLLSGMNESNNQIMSSCSLSLQDICQECAQLLSRQSVMKVLQVCRDTLQRPNCPAKVCVRLFQVAGYVISVLPASEIRNELEIMVAPLLHNFKSLLGSKAQGPEVVEQICHCLNCLTAMFRSLDPFEEQAVH--------PIS--------IVYEQLLQILPLIKGYCTEEIIMLAATGCVSKAVEIVREKLAPFVNATCQLLFDCFSACPMWCIMNTASLVIGMFGSEEITSQAIKEFFVAITTSCLTL---NSTDNTDSMQGLMEMMTKVIRTVPEFFF-EGTEFQEVLVKRALELMTLQETPTIKSTCHFVVTYLGVVSVYDTGKEVFLRCGKDIIGRVLLCIGVTAPRSLLDNYSDVLLAINKNFSTESSVWLNELLLTENFPTAVPTQQQKELFRKMVIKERSSKNRLRETVRNFALLCRGLMGLTY 2076
G + + IC + +GE + L +++ +++ + GHYP +ET S LTLTFWY LQ +Q+ ++ + LVDV K Q+P DE Y ++S+EKE FR YR+DI DT+MY++ L LS +KL LL+S + +WQ E++LY TID +P +I L+ ++ ++ ++ DT+ +G L EWL + I +LP +L + N ++ S +L+ IC+EC L + ++ V +D L + C+ L Q G+++S L EI L +++P + + L + P I H L L+ +F +LD + H P+ ++ + I ++ + + ++ A K+V+ + + AP V C++L +S P ++ ++ +F E I+ F+ +T+ LTL D+ D + M+++ + ++ P+ F E + + V + A+ + E PT+K++C F L ++ +V G+ ++ VL IG A RSL+D ++D+L A+NK+ + S+W+ E L FP+A + +QK+ F + +++ER +K R++E V+ F LLCRGL G Y
Sbjct: 300 GDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALG--NPELSVSSVSTLKKICRECKYDLPPYAA-NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKL-AEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVF-QCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLLCRGLHGTDY 959
The following BLAST results are available for this feature:
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