|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047070 ID=TCONS_00047070|Name=TCONS_00047070|organism=Clytia hemisphaerica|type=transcript|length=1558bpRun BLAST on NCBI transcript from alignment at scaffold_120:378077..392255- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047070 ID=TCONS_00047070|Name=TCONS_00047070|organism=Clytia hemisphaerica|type=transcript|length=14179bp|location=Sequence derived from alignment at scaffold_120:378077..392255- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047070 vs. Swiss-Prot (Human)
Match: GBRR2 (Gamma-aminobutyric acid receptor subunit rho-2 OS=Homo sapiens GN=GABRR2 PE=2 SV=5) HSP 1 Score: 177.563 bits (449), Expect = 4.962e-49 Identity = 111/400 (27.75%), Postives = 202/400 (50.50%), Query Frame = 2
Query: 161 SVPVGVSLYVLDMNPLKNDKLYDHYFADIIIQQIWYDFRLQYQEFSNETITVDGAFENNIWQPDTRILTEKRSYPVEITKKNVQLTLHPNGTVFTSRRTRSMNFCSMNYSTFPFDSQICEFRLEAFSYSNDYVDLHWLNRDEPEKNLVFARDLQIEQLQLEHFQVYGESFHYAGNGSGTHEQLVVNFHFKRPISFYLIRLYLPNLITVVLSWTAFWVDYRSLSARVTIGITTVLTINELRLNIYKDDASAGR--YLNLYDTYSFVCFLFVFAALIEYSIAQSIDIKYRLRDFYKAQQSMNPGQDGLDYEDT--VEQNITGASSNDQEQVPKRHF----KRLEKFSFDY-IDYQHSIVRDK--------------YHALDKISQYVFPLTFLIINVVYAGV 1291
++PVGV + V ++ + + + + ++ W D RL + SN+++T DG IW PD + KRS+ + T N+ L + P+G V S R C+M++S FP DSQ C LE+++Y+++ + L+W N DE K + + Q ++ F Y+ +G + +L +NF +R I F+L++ Y P + V+LSW +FW+D R++ ARV++GITTVLT+ + + +AS R Y+ D Y +V F+FVF +++EY+ + ++ + + P G+ + T ++ + + + +N P+ H +R +K + + + R K HA+DK S+ +FP +++ N++Y V
Sbjct: 76 AIPVGVDVQVESLDSISEVDM--DFTMTLYLRHYWKDERLAFSSASNKSMTFDGRLVKKIWVPDVFFVHSKRSFTHDTTTDNIMLRVFPDGHVLYSMRITVTAMCNMDFSHFPLDSQTCSLELESYAYTDEDLMLYWKNGDESLKT---DEKISLSQFLIQKFHTTSRLAFYS--STGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLTMTTIITGV---NASMPRVSYVKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKE--RKLREKFPCMCGMLHSKTMMLDGSYSESEANSLAGYPRSHILTEEERQDKIVVHLGLSGEANAARKKGLLKGQTGFRIFQNTHAIDKYSRLIFPASYIFFNLIYWSV 463 The following BLAST results are available for this feature:
BLAST of TCONS_00047070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.