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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047066 ID=TCONS_00047066|Name=TCONS_00047066|organism=Clytia hemisphaerica|type=transcript|length=2812bp
TAATCTCCAAACATTTCGAGTTTCAATTTCTATGCTAGAAAGCCAGAAAT
CTTTAACCAAACCAAATTACTAAAACCGAAATATACTAAACTTTTGGTAC
ACAAGAATGTCAGTGAAATTCATTTCTGTGCCACTCTATAGAACAAACCA
CAACACTTACCACTTCCTtgcattttatataaaaacaatatgTATGTTTT
ACATTCTCTTGTAAcataaaatgttttgaattggAGCTGATATAGACTTT
TTAATGTTAACGTTTTATCAATTATGTTGATGGGATTTTCAACATAAAct
atttaaattgtttttatatgTCACCCCACAGTgatgctatttttgataat
agcAAGTTTATTACATagggatttttttgttttgaaaaatcagtGCATAC
GTTTAATAAGTGCATGAGTTTAATATACttaaatgtttgtttgtttcaCC
CACAACAATTTAAATTGTCCAGAATATTGTTATCGAATCTGAATTTTGTA
TGGAACAAAGATTTTCTCAGAAGTCATGTTTTCTCGAAGATCTTACAAAA
AGAACAGCAAAATGatgGGTACAGAATGGAAACTAGATAGTCAATTACGT
GCCAGTTTGGAGCGCATCGAAAAAATCGTCTTCAAGCTACAAGACAGTGA
AAATGGAGTTCCCATCACCAACGCTAAAGCTTTGTTTCACACCATACCTA
ACGTCTGTACTGGCGCTGATATCGTCACTTGGCTTAAGAATGACCTTGAG
TTGAAAACACGTGCCGAGGCTTTGAATGTCGCTCGTACTATTGCCAAATA
TGGTTACATCTTTGTAGCCAGTGACAGTAAACTTACCGTCAAAGATGATT
TAACACACCACCGATTTCAACACGAGTTTTTCTGGCCAACTAAAGAAAGA
GCTATATCGAATTCTGATTATGCTGTCCATCTATGTAAACGTCTGTTTTC
CAATAAAAATCGATCAAACCTTGAAGTTTACGAGATGGATCAATTCACAC
GCTTGCAACGTCATTTAGGTCATAAATGGGAACACATTTGGGTACAAGCT
GAAGCAAGTTATAAAGTTGATAAGAAAAAGTCTAAAGCCGAGCAATACGT
CATTGAAAGCCAAGAAAGAGCTTTTTGGAATTTACACAAACCGCCACCCT
ATTCTGATTATGTTTTAGCTGCTGATCCtttgaagtttaaaaagaaTGCA
ACAACCGAGGCTATTACTCCGCTTTCTCCCGATCGCGCCGCCTCAACGCC
TTCCATTTTGAGGCGCCATTCAGTTGATTCTTTAAGAGATGACGCCATGA
AGCTTGGAACCGCCCTTCAAAAAGCAGAAGCACCAAAAGCTGTTGAAAGT
TTGATATCTTATTGTATGCAGTACAATAAATTCGACCCTTTACTCCGACA
ACCGAGTACTACCTCGAGTAACTCGGCTTTTTACACGGAAGAGTCGAACA
ACTCGAATGATGCTTCCAGACGTGGATCACAACAGGTGGAACGCTGGGCG
ATATCATTGGAGGAGCTATTACGTGATAAGGAAGGGGTACTCgtcttttt
aaaacatttagaaaaagaaCACAGCTCTGAGAATTTACGTTTTTGGTTAG
CTTGTGAAGAATACAAGGCGTGCCCTTTAAAGAAAGTTCCTGAAAAAGCT
gaacaaatttataaagaatATCTATCTCGTTCTGCATTTTATCAAGTGAA
TTTAGACAGTAAACTTATGGTTGATGTCGAAGAGGGTATGAAAAACCCGA
ACCATTTTACCTTTCGGGCTGCCCAACATGAAATCTTTCGTCTCATGCGA
TCAGACAGCTATCCGCGTTTCTTGAAATCCGAAAATTTTGTCATGTTATC
GAAAGAAGCGAATTCACCGAGTCATAAAGGACAAGAGAAGAAAGGAATTT
TATCCATTTTGACGAGTCCTCAACATAAAGTATAGATGTGGGttatttgt
gtgttttttttttgtcaaactcGTTCATTTTTGTTTGTCTATCTTCGTAT
GGAAATCTGCTGGTGATTTTTTATATAGTGTATGACGTATTTTGTGTTAG
ATTATTTTTTAGAGATAATATACTTGCTATGATTTTTATTACAATCGGTT
GTATCTACCATTTAATTGATTTCTCTTTCAAATTATACCTCAACCTATTT
GACAGCTTTTTATAACTGGCCATGGTCGCGAGTTTTCCGATATACCTGTT
TTGAACCATAATTCGTTTTGTGCAGTTCCGTTTTAGGAAAAATAAGTCTT
TGTTTAGCATAATTTTCCATCCCCCCTTATTCCTCCTTCAAGCCTTGGTT
CCTTTCCCCGGCCAGCTAAGTgaatactttttgacttttcgacGATCGTG
TAATTGAGGATAAAATCAAACCTCATGTTGTATAGATTAGCTTTATCTAG
TACATTTATTGCTGACAAAATTTTTATCGCGTtcattttttgtacataat
tatTTGTAGCTCTTAGACAATACTTTCCTTTCTTCGCTGCAAAGATTCAT
GAAGCGTCCCTTTCAACCAATAACGAAAATTGGTTATTTGGGAAAACGAA
CACtttggtttaactcactaaagaATTTTGTTTACTGAGCACACAAGATT
AATCTTTCGTAAGTTAAACCATGATGCTCTGTTTTTACCCAATtctgacg
tcatgccgtggcaaaaaatctttgaaacaaGTAGCAGAATTTTTTGACAT
CTTTTCTGTcgataaatttttaaaactcgTTGTCCTTTGAACAGATTAAA
CTTCAAGGTCTTTTAAATCACGTCTTTTTCTTAGctaagaaaataatttt
acctCAAGTAac Run BLAST on NCBI transcript from alignment at scaffold_120:362337..367651- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047066 ID=TCONS_00047066|Name=TCONS_00047066|organism=Clytia hemisphaerica|type=transcript|length=5315bp|location=Sequence derived from alignment at scaffold_120:362337..367651- (Clytia hemisphaerica)
TAATCTCCAAACATTTCGAGTTTCAATTTCTATGCTAGAAAGCCAGAAAT
CTTTAACCAAACCAAATTACTAAAACCGAAATATACTAAACTTTTGGTAC
ACAAGAATGTCAGTGAAATTCATTTCTGTGCCACTCTATAGAACAAACCA
CAACACTTACCACTTCCTTGCATTTTATATAAAAACAATATGTATGTTTT
ACATTCTCTTGTAACATAAAATGTTTTGAATTGGAGCTGATATAGACTTT
TTAATGTTAACGTTTTATCAATTATGTTGATGGGATTTTCAACATAAACT
ATTTAAATTGTTTTTATATGTCACCCCACAGTGATGCTATTTTTGATAAT
AGCAAGTTTATTACATAGGGATTTTTTTGTTTTGAAAAATCAGTGCATAC
GTTTAATAAGTGCATGAGTTTAATATACTTAAATGTTTGTTTGTTTCACC
CACAACAATTTAAATTGTCCAGAATATTGTTATCGAATCTGAATTTTGTA
TGGAACAAAGATTTTCTCAGAAGTCATGTTTTCTCGAAGATCTTACAAAA
AGAACAGCAAAATGGTATTACAATTATTTCATTATCTCTTTTCAAGTCAG
TTTAAAAGATACCTATTTTGTTATTATGCATTGAAAATTGACTTTTAAAT
TGAATTTGGTATAGCTCTGCATAGCCTCTTCATGATAGATAACTAGACAT
ATTTAAATGTATTATCGAGCTGAAATTCAGGTTGAATTGTTTGTTTGAAA
GAGTACTTCAGGTACTATATTTCTTGTTCAATTTTCTTTGTTTGTAGTGT
CACTTATTAATAAATTGGTAATTTGAAATGCCTTAAACGCTTCTTTAAAT
ACACATTACTACTTTAAAGCTGTTTTACATTCAACCATATTTACATTCAA
CCATTATTACATAAAACCATATTTAGGAATAATCTTTAGGACAGCAACAA
GGAAGTCCTTTTTCTTTTAACATCTGTATTGGAAGCTGTTTAGCTGTTCA
AATAGAAAATAACGTACTGGACAATTTTGACACTAGCTGTATATACAATC
AATTTTTTTTCCTGGATTGAATGATATTATCTTATCAAACTAATACTTTT
TCAACAGTTTAAAAACGTTTTAGGAGAAAAGGTTTTCTAAATTTCATTCT
TTATTCCCTTTGAGTTTAAAAAACGCTTTGGAAGTGGAGGTTTTCTAAAT
TATTTTCTCGATTTACTTTAGGGGTTAGTTTATTTTATAGCTAGGATAAG
GGAAGTATATTGAGGAAGTTCTGAACTTGGGATTCATTGTTCCGAGAATC
AGTTGAAAGTTTTTGATATCTTATATTGCAAAATGTATTGTTTTGGGGTA
AAATTCGAAAAAGAGGAACTTTAAAGGCTACTATATATTATATACAAAGA
TTTATAGATTTATGAAAGATGAGAATTATCAATGAAATATATATAATTCT
TTGTTCAAATTAATTATCAAATCCATGCTTGTTTATTAAAGCTTTTTGAA
GATCACTGTTAATTAATTTTCGTGAGTTTTGCTAAAAGAGCAATATTTTT
TTTCGTGATTTGCTTTTTTGTTGTTGGCTCTAAAAGAAGTAAAATTTTTT
GGTCAGTATATAAATAAGGCTAGGTTGGTTAGAGTCTAGGCTTAAATCTT
TGAAAACTAACTTCTTTTTAATGATATTATCTAGTCTTGTTTTAAAGAAA
GACCAAGCTAGAACGATAAACTCGGTATGCATTCACTCACCCTCTGGATA
AGGCTATCACTGTGTCTCACTAACATTCTGCCGATTGGTAGTGTGAAGGT
CACAGACTTGCACCGCGATGGACTGTGTTCGAATCTCAAGCACTTTCAGG
CAGGATGTTGTTAGGGAAACATGGTGATGTCTCTACTTTCACTTTAAGAC
CAAGCTTCTTTGCTCGAAGTTTTGGGTAGGGCTTAAACAGACCATATTCT
AACCAGACATCCTCCTTTATATGACCTTTTACGATAAATAAAACCTTTTT
TTTCGGATTTGCGATAATACTAACTGATACAAGTGAAAAAAAAAAATTAA
AAGCAAAGTTGCAACAAGAACCTTTCAAAATGAAATTTATACCAAAGATA
GATTTATTATCCAAAGCTTCATTTCGAAATTTTCAAGGTTGAGGTCAGTG
AGGTTTTTCAAGAGAAAATACCCTTTTTTGGCTAAAGAGAATCTTTCACA
ATGTTTCACAATAGAGATGCTGTAAATCTCATCTTTATAATCTTCGCACG
TTTTCGAAAATATATATTATTCGGTTTTAAATGTACTTTAAAAATTTGAA
ATTACAAATAACATCAAGATATGGGGAGTAATGGATATGGGATAGGTTAG
CAGGAGGATTTCATTTATTGAGTTTCGCTTCTTTTTAACACCTCCGATAT
TTTTGTTGTATCATTTCGTATTTTTCACAATGACTTATTCTGAATTGACG
TAAAAGAAACCTTGTTGATTTTAGCAGATATGGAAAAGAGACGAAAATAA
AAGTTAAGGTCAAAAGTTGTAGTATAGTGTAGTGTAGGTAAATTATTCTT
CATGCGCATACAGTGGTAAAGTCGATAGTTTGAATGATAATTGGTAGTAG
GTCTCAATAAGAGGAGAATTATGGTGCCGTTTTCTGGGTCTGAGGCCCCG
AGTTATTGCATTGATGTCACTATTTCTTGGGTAGAGCCCTCAAAATTTTG
ATATAAATTGACATCCTAGTCTCTTACAGTAACAACATCAATCAATTAAT
TGACTTTGCCTTTAACCTTACACACTTTAGTTTGTTTGTAATCTAATTTG
TAATCTTGTAAAAAACAAATAGCTACTAGGCTAATACAAGTCAACCTATT
TACAACATTGTATGGAGATCTTAAATCTTAAATGCAGTTGTAGAAGGTTA
TAGGGTTCCTTACTATGCAACTCAAAAAATACTGATGTTCATCTTGTCTA
ATTTTTAGATATTCTATTCAAAGAAACGATAAAAAGTTCGACTTTTCCCA
ATGAAACCCGTGTTCGTTTTGGTCATAAAAGAAACTAATGAATATAGTTT
TGTTTTTATATTTTTAGATGGGTACAGAATGGAAACTAGATAGTCAATTA
CGTGCCAGTTTGGAGCGCATCGAAAAAATCGTCTTCAAGCTACAAGACAG
TGAAAATGGAGTTCCCATCACCAACGCTAAAGCTTTGTTTCACACCATAC
CTAACGTCTGTACTGGCGCTGATATCGTCACTTGGCTTAAGAATGACCTT
GAGTTGAAAACACGTGCCGAGGCTTTGAATGTCGCTCGTACTATTGCCAA
ATATGGTTACATCTTTGTAGCCAGTGACAGTAAACTTACCGTCAAAGATG
ATTTAACACACCACCGATTTCAACACGAGTTTTTCTGGCCAACTAAAGAA
AGAGCTATATCGAATTCTGATTATGCTGTCCATCTATGTAAACGTCTGTT
TTCCAATAAAAATCGATCAAACCTTGAAGTTTACGAGATGGATCAATTCA
CACGCTTGCAACGTCATTTAGGTCATAAATGGGAACACATTTGGGTACAA
GCTGAAGCAAGTTATAAAGTTGATAAGAAAAAGTCTAAAGCCGAGCAATA
CGTCATTGAAAGCCAAGAAAGAGCTTTTTGGAATTTACACAAACCGCCAC
CCTATTCTGATTATGTTTTAGCTGCTGATCCTTTGAAGTTTAAAAAGAAT
GCAACAACCGAGGCTATTACTCCGCTTTCTCCCGATCGCGCCGCCTCAAC
GCCTTCCATTTTGAGGCGCCATTCAGTTGATTCTTTAAGAGATGACGCCA
TGAAGCTTGGAACCGCCCTTCAAAAAGCAGAAGCACCAAAAGCTGTTGAA
AGTTTGATATCTTATTGTATGCAGTACAATAAATTCGACCCTTTACTCCG
ACAACCGAGTACTACCTCGAGTAACTCGGCTTTTTACACGGAAGAGTCGA
ACAACTCGAATGATGCTTCCAGACGTGGATCACAACAGGTGGAACGCTGG
GCGATATCATTGGAGGAGCTATTACGTGATAAGGAAGGGGTACTCGTCTT
TTTAAAACATTTAGAAAAAGAACACAGCTCTGAGAATTTACGTTTTTGGT
TAGCTTGTGAAGAATACAAGGCGTGCCCTTTAAAGAAAGTTCCTGAAAAA
GCTGAACAAATTTATAAAGAATATCTATCTCGTTCTGCATTTTATCAAGT
GAATTTAGACAGTAAACTTATGGTTGATGTCGAAGAGGGTATGAAAAACC
CGAACCATTTTACCTTTCGGGCTGCCCAACATGAAATCTTTCGTCTCATG
CGATCAGACAGCTATCCGCGTTTCTTGAAATCCGAAAATTTTGTCATGTT
ATCGAAAGAAGCGAATTCACCGAGTCATAAAGGACAAGAGAAGAAAGGAA
TTTTATCCATTTTGACGAGTCCTCAACATAAAGTATAGATGTGGGTTATT
TGTGTGTTTTTTTTTTGTCAAACTCGTTCATTTTTGTTTGTCTATCTTCG
TATGGAAATCTGCTGGTGATTTTTTATATAGTGTATGACGTATTTTGTGT
TAGATTATTTTTTAGAGATAATATACTTGCTATGATTTTTATTACAATCG
GTTGTATCTACCATTTAATTGATTTCTCTTTCAAATTATACCTCAACCTA
TTTGACAGCTTTTTATAACTGGCCATGGTCGCGAGTTTTCCGATATACCT
GTTTTGAACCATAATTCGTTTTGTGCAGTTCCGTTTTAGGAAAAATAAGT
CTTTGTTTAGCATAATTTTCCATCCCCCCTTATTCCTCCTTCAAGCCTTG
GTTCCTTTCCCCGGCCAGCTAAGTGAATACTTTTTGACTTTTCGACGATC
GTGTAATTGAGGATAAAATCAAACCTCATGTTGTATAGATTAGCTTTATC
TAGTACATTTATTGCTGACAAAATTTTTATCGCGTTCATTTTTTGTACAT
AATTATTTGTAGCTCTTAGACAATACTTTCCTTTCTTCGCTGCAAAGATT
CATGAAGCGTCCCTTTCAACCAATAACGAAAATTGGTTATTTGGGAAAAC
GAACACTTTGGTTTAACTCACTAAAGAATTTTGTTTACTGAGCACACAAG
ATTAATCTTTCGTAAGTTAAACCATGATGCTCTGTTTTTACCCAATTCTG
ACGTCATGCCGTGGCAAAAAATCTTTGAAACAAGTAGCAGAATTTTTTGA
CATCTTTTCTGTCGATAAATTTTTAAAACTCGTTGTCCTTTGAACAGATT
AAACTTCAAGGTCTTTTAAATCACGTCTTTTTCTTAGCTAAGAAAATAAT
TTTACCTCAAGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047066-exon-scaffold_120-1575043694:367088..367651 | TCONS_00047066-exon-scaffold_120-1575043694:367088..367651 | Clytia hemisphaerica | exon |
| TCONS_00047066-exon-scaffold_120-1575043694:362337..364584 | TCONS_00047066-exon-scaffold_120-1575043694:362337..364584 | Clytia hemisphaerica | exon |
| TCONS_00047066-exon-scaffold_120-1510915933:367088..367651 | TCONS_00047066-exon-scaffold_120-1510915933:367088..367651 | Clytia hemisphaerica | exon |
| TCONS_00047066-exon-scaffold_120-1510915933:362337..364584 | TCONS_00047066-exon-scaffold_120-1510915933:362337..364584 | Clytia hemisphaerica | exon |
| TCONS_00047066-exon-scaffold_120-1491911889:367088..367651 | TCONS_00047066-exon-scaffold_120-1491911889:367088..367651 | Clytia hemisphaerica | exon |
| TCONS_00047066-exon-scaffold_120-1491911889:362337..364584 | TCONS_00047066-exon-scaffold_120-1491911889:362337..364584 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_120 | supercontig | scaffold_120:362337..367651 - |
Blast
BLAST of TCONS_00047066 vs. Swiss-Prot (Human)
Match: RGS6 (Regulator of G-protein signaling 6 OS=Homo sapiens GN=RGS6 PE=1 SV=5) HSP 1 Score: 298.516 bits (763), Expect = 2.765e-90 Identity = 177/451 (39.25%), Postives = 258/451 (57.21%), Query Frame = 1
Query: 613 RIEKIVFKLQDSE-NGVPITNAKALFHTIPNVCTGADIVTWLKNDLELKTRAEALNVARTIAKYGYIFVASDSKLTVKDDLTHHRFQHEFFWPTKERAISNSDYAVHLCKRLFSNKNRSNLEVYEMDQFTRLQRHLGHKWEHIWVQAEASYKVDKKKSKAEQYVIESQERAFWNLHKPPPYSDYVLAAD---------PLKFKKN--ATTEAITPLSPDRAASTPSILRRHSVDSLRDDAMKLGTALQK--AEAPKAVESLISYCMQYNKFDPLLR--QPST--TSSNSAFYTEESNNSNDASRRGSQQ-VERWAISLEELLRDKEGVLVFLKHLEKEHSSENLRFWLACEEYKACPLKKVPEKAEQIYKEYLSRSAFYQVNLDSKLMVDVEEGMKNPNHFTFRAAQHEIFRLMRSDSYPRFLKSENF--VMLSKEANSPSHKGQEKKGIL 1902
+IE I+ K+QD + GVPI K+ IP+V TG DIV WL +L ++ EA+++ IA GYIF SD LT+KDD T +RFQ +FWP+ N+DYA++LCKR NK R L YE + RLQR KWE I++QAEA K+D+KK K E+ +++SQERAFW++H+P P D P K KK+ TE SP S P +R+ + + +R L + + + K ESLI+Y QY ++DPL+ +PS S + A + E S+ SQQ V+RW S +E+L+D+ G FL+ LE E SSENLRFWLA ++ K PL+ V ++ E+I++E+L+ A +NLDS + +K+ +TF AQ I++LM+SDSY RFL+S + ++L+K+ S G+ G++
Sbjct: 28 KIEDIITKMQDDKTGGVPIRTVKSFLSKIPSVVTGTDIVQWLMKNLSIEDPVEAIHLGSLIAAQGYIFPISDHVLTMKDDGTFYRFQAPYFWPSNCWEPENTDYAIYLCKRTMQNKARLELADYEAENLARLQRAFARKWEFIFMQAEAQVKIDRKKDKTERKILDSQERAFWDVHRPVPGCVNTTEMDIRKCRRLKNPQKVKKSVYGVTEESQAQSPVHVLSQP--IRKTTKEDIRKQITFLNAQIDRHCLKMSKVAESLIAYTEQYVEYDPLITPAEPSNPWISDDVALWDIE------MSKEPSQQRVKRWGFSFDEILKDQVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQDVAKRVEEIWQEFLAPGAPSAINLDSHSYEITSQNVKDGGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDLLLAKKKGK-SLAGKRLTGLM 469
The following BLAST results are available for this feature:
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