TCONS_00047064 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047064
Unique Name	TCONS_00047064
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1348

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_120:357651..361713-
coding sequence from alignment at scaffold_120:357651..361713-

transcript sequence

>TCONS_00047064 ID=TCONS_00047064|Name=TCONS_00047064|organism=Clytia hemisphaerica|type=transcript|length=1348bp
ctcAAATAAGATAAAACTAGTTACAAACTAATCCAACTATGACTTCGGCA
ATAAGAATGACAAAAGCAAAACTTCACAAGCCACAATACTATACACCAAT
ATCATCTTCCTTGTACGATCACCGCCTGTTCCATCACAGAAAGGAAAGCT
CGACATACAGGAATCATGGCTGTAGATGTGCTTTTGACGATAAACGAGCT
AATGTCAAATCAAGAAACTTTCTTCCTAGTAACCAAGCGCTTTCTACAAA
AATAACTTCATCAGACTTTCTATCAATCAATGGCACTGCACTTTCAAAGA
CATTTCAACGCCAGAAGATTACAAGCTCTATATATCAGCAGAGTCCTAAT
ATCATAAAACCGTATTTATCTCTCGTGCGTTTTGATAAGCCAGCCGGTAC
CTGGTTACTTTATCTACCCTGTACTTGGAGTATATGCCTCGCTGCGACAC
CTGGACATTTCCCAGATCTGAAAATGTTGGCACTGTTTGGTACAGGAGCA
TTTATAATGCGTGGTGCTGGCTGTGTGATCAATGATATGTGGGATAGTGA
CTTCgataaaaagGTTGATAGGACAGCGATGCGACCGATTGCATCAGGGC
AACTGACGCATGCACAAGCAACGGTGTTTCTTGCTGGTCTACTGTCGTGT
GGTCTCGGCGTGCTTCTGTCTCTTAATTGGTACAGTGTTTTCTTAGGTGC
TGCATCAATGGGTTTGGTGGTCGCTTATCCTTTAATGAAACGCTTCACCT
ATTGGCCTCAAATATTTCTAGGCTTAACTTTTAACTGGGGAGCATTGTTA
GGTTGGACGGCAGTCCAAGGAAGCTGTGATTGGTCAGTGTGTCTGCCACT
TTATACTGCTGGAATATTGTGGACCCTACACTACGATACTATATACGCTC
ACCAGGACAAAGTTGATGATATACAAGTGGGCGTAAAATCAACCGCCCTC
TTCATGGGTGACCGCACAAAGATGTGGTTGACTGGCTTCTCTACCACTAT
GGTAGGATGTCTAACAATGGTCGGACTGATGAGCGAGCAATGTTGGCCTT
ACTATGCATCTTTGGCTGGTATTTCTACTCATCTAGCATGGCAGATCTAC
ACGGTGAATCTTGACAACCCAACAGATTGTTTTTCCAAATTCTCATCGAA
CAGATATCTGGGTATGGTTTTAACAACTGCTATCATATGTAGTACTTTAC
TCAAAACGTGAtgaatatttttcataattgtaaGAAAtgttttctcaaga
tttttcatatatttttttaatctttgcaATCTTTATTTTTGTACATACAT
TTTATAGAAAGCTTGTCATGCAAACAAGAGAaactttcattcaaaaaa

Run BLAST on NCBI

protein sequence of TCONS_00047064-protein

>TCONS_00047064-protein ID=TCONS_00047064-protein|Name=TCONS_00047064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MTSAIRMTKAKLHKPQYYTPISSSLYDHRLFHHRKESSTYRNHGCRCAFD
DKRANVKSRNFLPSNQALSTKITSSDFLSINGTALSKTFQRQKITSSIYQ
QSPNIIKPYLSLVRFDKPAGTWLLYLPCTWSICLAATPGHFPDLKMLALF
GTGAFIMRGAGCVINDMWDSDFDKKVDRTAMRPIASGQLTHAQATVFLAG
LLSCGLGVLLSLNWYSVFLGAASMGLVVAYPLMKRFTYWPQIFLGLTFNW
GALLGWTAVQGSCDWSVCLPLYTAGILWTLHYDTIYAHQDKVDDIQVGVK
STALFMGDRTKMWLTGFSTTMVGCLTMVGLMSEQCWPYYASLAGISTHLA
WQIYTVNLDNPTDCFSKFSSNRYLGMVLTTAIICSTLLKT

Run BLAST on NCBI

transcript from alignment at scaffold_120:357651..361713-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047064 ID=TCONS_00047064|Name=TCONS_00047064|organism=Clytia hemisphaerica|type=transcript|length=4063bp|location=Sequence derived from alignment at scaffold_120:357651..361713- (Clytia hemisphaerica)
CTCAAATAAGATAAAACTAGTTACAAACTAATCCAACTATGACTTCGGCA
ATAAGAATGACAAAAGCAAAACTTCACAAGCCACAATACTATACACCAAT
ATCATCTTCCTTGTACGATCACCGCCTGTTCCATCACAGAAAGGAAAGCT
CGACATACAGGAATCATGGCTGTAGATGTGCTTTTGACGATAAACGAGCT
AATGTCAAATCAAGAAACTTTCTTCCTAGTAACCAAGCGCTTTCTACAAA
AATAACTTCATCAGACTTTCTATCAATCAATGGCACTGCACTTTCAAAGA
CATTTCAACGCCAGAAGATTACAAGCTCTATATATCAGCAGAGTCCTAAT
ATCATAAAACCGTATTTATCTCTCGTGCGTTTTGATAAGCCAGCCGGTAC
CTGGTTACTTTATCTACCCTGTACTTGGAGTATATGCCTCGCTGCGACAC
CTGGACATTTCCCAGATCTGAAAATGTTGGCACTGTTTGGTACAGGAGCA
TTTATAATGCGTGGTGCTGGCTGTGTGATCAATGATATGTGGGATAGTGA
CTTCGATAAAAAGGTTTTTTTTCTTTAGTTATATAATCTGATTGGACTTT
TTGCAGAAAGTTAGGGTGAGACAATTAGTAACTATTTTAGTGCAAAACAT
CTCGTTCCAAAACGAAGCGACATCGACGTTCATTCATTGGTTAGTCTCAA
AACCAATAGAATAACTTCTTTATTCCATATTGCGGAAAGGGGTCTGACCC
CGCTTATAAAATGACCCCCCCTTCTTGGCATCCCCCCAACCTTAAGAAAT
GCCTGTCCCCAAGGGTTTTGGGCTAAATTTTCGAAAATATATACTGTATA
AGTGCGATCCGATAATCCCCTTCTCGCTGCTACCCCCTTCTAAAAATCAA
CCCCCTTGTTTTCTCTCTCTATTTGTTTATGGTAAAAAGGGAAGGGAAAC
AGTAAAGAAAAATAAGTCTGGCAATAGCGCACCGCGCTGAATCTAAAAAT
AGATTTTATTTTTGACATAATCAATACTCTCGATGTGTTTGTACGAGTTC
CAATCCCATCAACCTTTGCGTTAATCTCTTTTGCACGTTAATTGCATCGT
TTGACAAAAGATATATAACAGCTTGCACGTATTTTTAATTGAGCCCCGTT
GAATTGTGGGATTGCAACTCGTACAAATGTCAAAAAAGTGAAAAGTAATA
ATGACGTAAGCGTTGCGGAGTGCTATTATATGTAAGCCCCCCCTTCTTAA
ACGATCCCCCTCCTTGCTATCCCCCCTTTTTAATGAAAATTTCTGATCCC
CCCATTCTTCACTTTTTTGAAGGTGTCAAAAGGGGGGGGGGTCCGGACTA
TGTATTCCGCTTCAGAAAAATGAAGAACCATAACTGGTGAACATGTTTTC
AACTTTTTAAACTCATCTTAACAAATGAAATTCATTTCTTTAAAAATTTA
CATTTTTTATCGTGATCCTGATGAATTCCAATCTTAATTAAAATTTGTTT
CCATTTTTTACTTCACATGACAGGTTGATAGGACAGCGATGCGACCGATT
GCATCAGGGCAACTGACGCATGCACAAGCAACGGTGTTTCTTGCTGGTCT
ACTGTCGTGTGGTCTCGGCGTGCTTCTGTCTCTTAATTGGTACAGGTATG
TGTCTTTACATCTTCATAAGAATTGTAAAAGCAGACAAAAGAGTAGAATA
TTATGATACAGTAAGGACTCCATAACTTGAACCTCTGTTACTCGAATGTC
TCATTAACTAAACAAGTTAGCTGCTGGTCCCTTCATTAACAAACTGTTAT
AAGTAAGTCTCTATAACTCAATTTCTATAACTCGAACAAATTTGCGTTTC
CCGTACCTGTTCGAGTTACGAAGATTCCTTTGTATTACGTTTTTAGTGTC
TCTTATCTGTTATGATAATGATATTATTTTGCTTGTGTTTAGTGTTTTCT
TAGGTGCTGCATCAATGGGTTTGGTGGTCGCTTATCCTTTAATGAAACGC
TTCACCTATTGGCCTCAAATATTTCTAGGTAATATTATGCTTTCTTTGTT
TGTTTTGGACAAGTCTTAATTGTGCGCTGTTTTAACAGTACGGAAATTTT
GGGATTAAACATTTTATCCTTATAATACATTGTCAAGAAATCCAAGTGAT
TCTTGCTGTGACGATCATTAGATATTGTCTCTTAAATCTAGGCGTAGTTT
TTTAAATACACACACATGCCTGTAGATAAATCTTTACGGGTATAAACTCC
ATCAATTATTTGGCCATTTTGCATGGTTTCATTCACTTTCATATACTCAT
TCACACAAAACACGCACACGTTTCACACCATTAGCCATTACACTTAACTG
GGGTACACTTTTCGGTTGGTCTGCTATACGGCGTCTGATTGGTCTATTTG
TATACCACTTTACACAGCGGCCGTTGTCTGGACCATTTACTCACACCAAG
TAGTAAAGACCATTCCAAATGTACGGACCTTGTATCTAAAATGAATGAAA
GGTTGACTTTGACTGTTGCGTCAAGTTACGTCACTGTCTGATGCCATTGG
GAACAGATATTTTTACGTAATCCGTCCTCGTAAACTCGGATTAAAACCCC
TTGCATTAGATCAGTTTGTTTAACTTGTGTCTTTGATTATCATGTCCTTT
TGATTCCTTTCCTTTACCCCTCATTTTAGGCTTAACTTTTAACTGGGGAG
CATTGTTAGGTTGGACGGCAGTCCAAGGAAGCTGTGATTGGTCAGTGTGT
CTGCCACTTTATACTGCTGGAATATTGTGGACCCTACACTACGATACTAT
ATACGCTCACCAGGTAGCTAGAAACCCATTTTTCTTTCATACTCTTTGAT
AATATGGCTAAGACCTTGCAACTACTGTATAGAAAAACTTCACAATCTTT
CTCGACCATAAAAAAATTGGCTGCTTTGGACTGCCGTTGCAACTTTTCAA
TATACTATTCTGGCATTAGTTGCAATTTGTTGAATGAAAAGTTCGGCACC
AATCTTTTAGATTTTATCCAAAACTGATAACATTGCACTATCTGGTGTAT
TTTAGGACAAAGTTGATGATATACAAGTGGGCGTAAAATCAACCGCCCTC
TTCATGGGTGACCGCACAAAGATGTGGTTGACTGGCTTCTCTACCACTAT
GGTAGGATGTCTAACAATGGTCGGACTGATGAGCGAGCAATGTTGGCCTT
ACTATGCATCTTTGGCTGGTATTTCTACTCATCTAGCATGGCAGGTAATT
CCCTTCAAGTAATGGGTAATGGAGNATGCATCTTTGGCTGGTATTTTAAC
TCATCTAGCATGGCAGGTAATTCCCTTCAAGTAATGGGTAATGGAGTAAG
CTTTATGAGGCATTTTTAACTGAAAGGGTCGAGTTGGAGAGATTCCACTG
TATCTAGCTGTAAAGTGATTCAAATTACTCTCTGTAGTTCGAATCTTTCT
CTAATTTGAATACAGCTTTTGGTCCCTGAAGATCAGATTAGAGAGAGTCA
ACTGCGTAAGCAAGCGGACTGAAAATCTCTGTCTTACTTTTCATCGTTAC
CTTCTTTTATTCCTATCAGCCACAGACTTTTACTCTACATTTTAACTTTG
CAAATAGCCTGATTTTCGTGGTATAAGCTTCTCTCAAGAGTTATTTAGTG
AATTTAATTAGTGAGCTGCCCTCCCTCCCGAAGGCATATTGAAATCTAAA
AATTTGCACTTAAAATTGTAACATACTGTTAGAGGAGATATTTGAAAACA
GTGTCATTTGTAAGTGTTTAAGAAACTTATATGCTTATCAAATTTACTTA
TTCTTTCAGATCTACACGGTGAATCTTGACAACCCAACAGATTGTTTTTC
CAAATTCTCATCGAACAGATATCTGGGTATGGTTTTAACAACTGCTATCA
TATGTAGTACTTTACTCAAAACGTGATGAATATTTTTCATAATTGTAAGA
AATGTTTTCTCAAGATTTTTCATATATTTTTTTAATCTTTGCAATCTTTA
TTTTTGTACATACATTTTATAGAAAGCTTGTCATGCAAACAAGAGAAACT
TTCATTCAAAAAA

Coding sequence (CDS) from alignment at scaffold_120:357651..361713-

>TCONS_00047064 ID=TCONS_00047064|Name=TCONS_00047064|organism=Clytia hemisphaerica|type=CDS|length=7038bp|location=Sequence derived from alignment at scaffold_120:357651..361713- (Clytia hemisphaerica)
ATCTACACGGTGAATCTTGACAACCCAACAGATTGTTTTTCCAAATTCTC
ATCGAACAGATATCTGGGTATGGTTTTAACAACTGCTATCATATGTAGTA
CTTTACTCAAAACGTGAGACAAAGTTGATGATATACAAGTGGGCGTAAAA
TCAACCGCCCTCTTCATGGGTGACCGCACAAAGATGTGGTTGACTGGCTT
CTCTACCACTATGGTAGGATGTCTAACAATGGTCGGACTGATGAGCGAGC
AATGTTGGCCTTACTATGCATCTTTGGCTGGTATTTCTACTCATCTAGCA
TGGCAGGCTTAACTTTTAACTGGGGAGCATTGTTAGGTTGGACGGCAGTC
CAAGGAAGCTGTGATTGGTCAGTGTGTCTGCCACTTTATACTGCTGGAAT
ATTGTGGACCCTACACTACGATACTATATACGCTCACCAGTGTTTTCTTA
GGTGCTGCATCAATGGGTTTGGTGGTCGCTTATCCTTTAATGAAACGCTT
CACCTATTGGCCTCAAATATTTCTAGGTTGATAGGACAGCGATGCGACCG
ATTGCATCAGGGCAACTGACGCATGCACAAGCAACGGTGTTTCTTGCTGG
TCTACTGTCGTGTGGTCTCGGCGTGCTTCTGTCTCTTAATTGGTACAGAT
GACTTCGGCAATAAGAATGACAAAAGCAAAACTTCACAAGCCACAATACT
ATACACCAATATCATCTTCCTTGTACGATCACCGCCTGTTCCATCACAGA
AAGGAAAGCTCGACATACAGGAATCATGGCTGTAGATGTGCTTTTGACGA
TAAACGAGCTAATGTCAAATCAAGAAACTTTCTTCCTAGTAACCAAGCGC
TTTCTACAAAAATAACTTCATCAGACTTTCTATCAATCAATGGCACTGCA
CTTTCAAAGACATTTCAACGCCAGAAGATTACAAGCTCTATATATCAGCA
GAGTCCTAATATCATAAAACCGTATTTATCTCTCGTGCGTTTTGATAAGC
CAGCCGGTACCTGGTTACTTTATCTACCCTGTACTTGGAGTATATGCCTC
GCTGCGACACCTGGACATTTCCCAGATCTGAAAATGTTGGCACTGTTTGG
TACAGGAGCATTTATAATGCGTGGTGCTGGCTGTGTGATCAATGATATGT
GGGATAGTGACTTCGATAAAAAGATCTACACGGTGAATCTTGACAACCCA
ACAGATTGTTTTTCCAAATTCTCATCGAACAGATATCTGGGTATGGTTTT
AACAACTGCTATCATATGTAGTACTTTACTCAAAACGTGAGACAAAGTTG
ATGATATACAAGTGGGCGTAAAATCAACCGCCCTCTTCATGGGTGACCGC
ACAAAGATGTGGTTGACTGGCTTCTCTACCACTATGGTAGGATGTCTAAC
AATGGTCGGACTGATGAGCGAGCAATGTTGGCCTTACTATGCATCTTTGG
CTGGTATTTCTACTCATCTAGCATGGCAGGCTTAACTTTTAACTGGGGAG
CATTGTTAGGTTGGACGGCAGTCCAAGGAAGCTGTGATTGGTCAGTGTGT
CTGCCACTTTATACTGCTGGAATATTGTGGACCCTACACTACGATACTAT
ATACGCTCACCAGTGTTTTCTTAGGTGCTGCATCAATGGGTTTGGTGGTC
GCTTATCCTTTAATGAAACGCTTCACCTATTGGCCTCAAATATTTCTAGG
TTGATAGGACAGCGATGCGACCGATTGCATCAGGGCAACTGACGCATGCA
CAAGCAACGGTGTTTCTTGCTGGTCTACTGTCGTGTGGTCTCGGCGTGCT
TCTGTCTCTTAATTGGTACAGATGACTTCGGCAATAAGAATGACAAAAGC
AAAACTTCACAAGCCACAATACTATACACCAATATCATCTTCCTTGTACG
ATCACCGCCTGTTCCATCACAGAAAGGAAAGCTCGACATACAGGAATCAT
GGCTGTAGATGTGCTTTTGACGATAAACGAGCTAATGTCAAATCAAGAAA
CTTTCTTCCTAGTAACCAAGCGCTTTCTACAAAAATAACTTCATCAGACT
TTCTATCAATCAATGGCACTGCACTTTCAAAGACATTTCAACGCCAGAAG
ATTACAAGCTCTATATATCAGCAGAGTCCTAATATCATAAAACCGTATTT
ATCTCTCGTGCGTTTTGATAAGCCAGCCGGTACCTGGTTACTTTATCTAC
CCTGTACTTGGAGTATATGCCTCGCTGCGACACCTGGACATTTCCCAGAT
CTGAAAATGTTGGCACTGTTTGGTACAGGAGCATTTATAATGCGTGGTGC
TGGCTGTGTGATCAATGATATGTGGGATAGTGACTTCGATAAAAAGATCT
ACACGGTGAATCTTGACAACCCAACAGATTGTTTTTCCAAATTCTCATCG
AACAGATATCTGGGTATGGTTTTAACAACTGCTATCATATGTAGTACTTT
ACTCAAAACGTGAGACAAAGTTGATGATATACAAGTGGGCGTAAAATCAA
CCGCCCTCTTCATGGGTGACCGCACAAAGATGTGGTTGACTGGCTTCTCT
ACCACTATGGTAGGATGTCTAACAATGGTCGGACTGATGAGCGAGCAATG
TTGGCCTTACTATGCATCTTTGGCTGGTATTTCTACTCATCTAGCATGGC
AGGCTTAACTTTTAACTGGGGAGCATTGTTAGGTTGGACGGCAGTCCAAG
GAAGCTGTGATTGGTCAGTGTGTCTGCCACTTTATACTGCTGGAATATTG
TGGACCCTACACTACGATACTATATACGCTCACCAGTGTTTTCTTAGGTG
CTGCATCAATGGGTTTGGTGGTCGCTTATCCTTTAATGAAACGCTTCACC
TATTGGCCTCAAATATTTCTAGGTTGATAGGACAGCGATGCGACCGATTG
CATCAGGGCAACTGACGCATGCACAAGCAACGGTGTTTCTTGCTGGTCTA
CTGTCGTGTGGTCTCGGCGTGCTTCTGTCTCTTAATTGGTACAGATGACT
TCGGCAATAAGAATGACAAAAGCAAAACTTCACAAGCCACAATACTATAC
ACCAATATCATCTTCCTTGTACGATCACCGCCTGTTCCATCACAGAAAGG
AAAGCTCGACATACAGGAATCATGGCTGTAGATGTGCTTTTGACGATAAA
CGAGCTAATGTCAAATCAAGAAACTTTCTTCCTAGTAACCAAGCGCTTTC
TACAAAAATAACTTCATCAGACTTTCTATCAATCAATGGCACTGCACTTT
CAAAGACATTTCAACGCCAGAAGATTACAAGCTCTATATATCAGCAGAGT
CCTAATATCATAAAACCGTATTTATCTCTCGTGCGTTTTGATAAGCCAGC
CGGTACCTGGTTACTTTATCTACCCTGTACTTGGAGTATATGCCTCGCTG
CGACACCTGGACATTTCCCAGATCTGAAAATGTTGGCACTGTTTGGTACA
GGAGCATTTATAATGCGTGGTGCTGGCTGTGTGATCAATGATATGTGGGA
TAGTGACTTCGATAAAAAGATCTACACGGTGAATCTTGACAACCCAACAG
ATTGTTTTTCCAAATTCTCATCGAACAGATATCTGGGTATGGTTTTAACA
ACTGCTATCATATGTAGTACTTTACTCAAAACGTGAGACAAAGTTGATGA
TATACAAGTGGGCGTAAAATCAACCGCCCTCTTCATGGGTGACCGCACAA
AGATGTGGTTGACTGGCTTCTCTACCACTATGGTAGGATGTCTAACAATG
GTCGGACTGATGAGCGAGCAATGTTGGCCTTACTATGCATCTTTGGCTGG
TATTTCTACTCATCTAGCATGGCAGGCTTAACTTTTAACTGGGGAGCATT
GTTAGGTTGGACGGCAGTCCAAGGAAGCTGTGATTGGTCAGTGTGTCTGC
CACTTTATACTGCTGGAATATTGTGGACCCTACACTACGATACTATATAC
GCTCACCAGTGTTTTCTTAGGTGCTGCATCAATGGGTTTGGTGGTCGCTT
ATCCTTTAATGAAACGCTTCACCTATTGGCCTCAAATATTTCTAGGTTGA
TAGGACAGCGATGCGACCGATTGCATCAGGGCAACTGACGCATGCACAAG
CAACGGTGTTTCTTGCTGGTCTACTGTCGTGTGGTCTCGGCGTGCTTCTG
TCTCTTAATTGGTACAGATGACTTCGGCAATAAGAATGACAAAAGCAAAA
CTTCACAAGCCACAATACTATACACCAATATCATCTTCCTTGTACGATCA
CCGCCTGTTCCATCACAGAAAGGAAAGCTCGACATACAGGAATCATGGCT
GTAGATGTGCTTTTGACGATAAACGAGCTAATGTCAAATCAAGAAACTTT
CTTCCTAGTAACCAAGCGCTTTCTACAAAAATAACTTCATCAGACTTTCT
ATCAATCAATGGCACTGCACTTTCAAAGACATTTCAACGCCAGAAGATTA
CAAGCTCTATATATCAGCAGAGTCCTAATATCATAAAACCGTATTTATCT
CTCGTGCGTTTTGATAAGCCAGCCGGTACCTGGTTACTTTATCTACCCTG
TACTTGGAGTATATGCCTCGCTGCGACACCTGGACATTTCCCAGATCTGA
AAATGTTGGCACTGTTTGGTACAGGAGCATTTATAATGCGTGGTGCTGGC
TGTGTGATCAATGATATGTGGGATAGTGACTTCGATAAAAAGATCTACAC
GGTGAATCTTGACAACCCAACAGATTGTTTTTCCAAATTCTCATCGAACA
GATATCTGGGTATGGTTTTAACAACTGCTATCATATGTAGTACTTTACTC
AAAACGTGAGACAAAGTTGATGATATACAAGTGGGCGTAAAATCAACCGC
CCTCTTCATGGGTGACCGCACAAAGATGTGGTTGACTGGCTTCTCTACCA
CTATGGTAGGATGTCTAACAATGGTCGGACTGATGAGCGAGCAATGTTGG
CCTTACTATGCATCTTTGGCTGGTATTTCTACTCATCTAGCATGGCAGGC
TTAACTTTTAACTGGGGAGCATTGTTAGGTTGGACGGCAGTCCAAGGAAG
CTGTGATTGGTCAGTGTGTCTGCCACTTTATACTGCTGGAATATTGTGGA
CCCTACACTACGATACTATATACGCTCACCAGTGTTTTCTTAGGTGCTGC
ATCAATGGGTTTGGTGGTCGCTTATCCTTTAATGAAACGCTTCACCTATT
GGCCTCAAATATTTCTAGGTTGATAGGACAGCGATGCGACCGATTGCATC
AGGGCAACTGACGCATGCACAAGCAACGGTGTTTCTTGCTGGTCTACTGT
CGTGTGGTCTCGGCGTGCTTCTGTCTCTTAATTGGTACAGATGACTTCGG
CAATAAGAATGACAAAAGCAAAACTTCACAAGCCACAATACTATACACCA
ATATCATCTTCCTTGTACGATCACCGCCTGTTCCATCACAGAAAGGAAAG
CTCGACATACAGGAATCATGGCTGTAGATGTGCTTTTGACGATAAACGAG
CTAATGTCAAATCAAGAAACTTTCTTCCTAGTAACCAAGCGCTTTCTACA
AAAATAACTTCATCAGACTTTCTATCAATCAATGGCACTGCACTTTCAAA
GACATTTCAACGCCAGAAGATTACAAGCTCTATATATCAGCAGAGTCCTA
ATATCATAAAACCGTATTTATCTCTCGTGCGTTTTGATAAGCCAGCCGGT
ACCTGGTTACTTTATCTACCCTGTACTTGGAGTATATGCCTCGCTGCGAC
ACCTGGACATTTCCCAGATCTGAAAATGTTGGCACTGTTTGGTACAGGAG
CATTTATAATGCGTGGTGCTGGCTGTGTGATCAATGATATGTGGGATAGT
GACTTCGATAAAAAGATCTACACGGTGAATCTTGACAACCCAACAGATTG
TTTTTCCAAATTCTCATCGAACAGATATCTGGGTATGGTTTTAACAACTG
CTATCATATGTAGTACTTTACTCAAAACGTGAGACAAAGTTGATGATATA
CAAGTGGGCGTAAAATCAACCGCCCTCTTCATGGGTGACCGCACAAAGAT
GTGGTTGACTGGCTTCTCTACCACTATGGTAGGATGTCTAACAATGGTCG
GACTGATGAGCGAGCAATGTTGGCCTTACTATGCATCTTTGGCTGGTATT
TCTACTCATCTAGCATGGCAGGCTTAACTTTTAACTGGGGAGCATTGTTA
GGTTGGACGGCAGTCCAAGGAAGCTGTGATTGGTCAGTGTGTCTGCCACT
TTATACTGCTGGAATATTGTGGACCCTACACTACGATACTATATACGCTC
ACCAGTGTTTTCTTAGGTGCTGCATCAATGGGTTTGGTGGTCGCTTATCC
TTTAATGAAACGCTTCACCTATTGGCCTCAAATATTTCTAGGTTGATAGG
ACAGCGATGCGACCGATTGCATCAGGGCAACTGACGCATGCACAAGCAAC
GGTGTTTCTTGCTGGTCTACTGTCGTGTGGTCTCGGCGTGCTTCTGTCTC
TTAATTGGTACAGATGACTTCGGCAATAAGAATGACAAAAGCAAAACTTC
ACAAGCCACAATACTATACACCAATATCATCTTCCTTGTACGATCACCGC
CTGTTCCATCACAGAAAGGAAAGCTCGACATACAGGAATCATGGCTGTAG
ATGTGCTTTTGACGATAAACGAGCTAATGTCAAATCAAGAAACTTTCTTC
CTAGTAACCAAGCGCTTTCTACAAAAATAACTTCATCAGACTTTCTATCA
ATCAATGGCACTGCACTTTCAAAGACATTTCAACGCCAGAAGATTACAAG
CTCTATATATCAGCAGAGTCCTAATATCATAAAACCGTATTTATCTCTCG
TGCGTTTTGATAAGCCAGCCGGTACCTGGTTACTTTATCTACCCTGTACT
TGGAGTATATGCCTCGCTGCGACACCTGGACATTTCCCAGATCTGAAAAT
GTTGGCACTGTTTGGTACAGGAGCATTTATAATGCGTGGTGCTGGCTGTG
TGATCAATGATATGTGGGATAGTGACTTCGATAAAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030007	XLOC_030007	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00047064-protein	TCONS_00047064-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_120	supercontig	scaffold_120:357651..361713 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.2408	37.9484	25.3142	19.3859	3.78045	2.95417	2.72312	3.78654	6.01437	4.40046	5.86851	4.03961	5.28249	7.09943	7.9836	9.24365	9.79739	11.1647	2.94197	3.91528	9.57901	11.5459	36.6249	28.8146	7.17636	7.13332	2.90149	3.60094	18.98	19.0608

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006370	HB_polyprenyltransferase
IPR000537	UbiA_prenyltransferase
IPR030470	UbiA_prenylTrfase_CS
IPR031103	HB_octoprenylTrfase

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0004659	prenyltransferase activity
GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups

Vocabulary: **Biological Process**
Term	Definition
GO:0006744	ubiquinone biosynthetic process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004659	prenyltransferase activity
molecular_function	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups

Blast

[Close]

BLAST of TCONS_00047064 vs. Swiss-Prot (Human)
Match: COQ2 (4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Homo sapiens GN=COQ2 PE=1 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 1.048e-121
Identity = 179/293 (61.09%), Postives = 226/293 (77.13%), Query Frame = 3

Query:  321 TSSIYQQSPNIIKPYLSLVRFDKPAGTWLLYLPCTWSICLAATPGHFPDLKMLALFGTGAFIMRGAGCVINDMWDSDFDKKVDRTAMRPIASGQLTHAQATVFXXXXXXXXXXXXXXXNWYSVFLGAASMGLVVAYPLMKRFTYWPQIFLGLTFNWGALLGWTAVQGSCDWSVCLPLYTAGILWTLHYDTIYAHQDKVDDIQVGVKSTALFMGDRTKMWLTGFSTTMVGCLTMVGLMSEQCWPYYASLAGISTHLAWQIYTVNLDNPTDCFSKFSSNRYLGMVLTTAIICSTL 1199
             +++   +P  ++PYL L+R DKP GTWLLYLPCTWSI LAA PG FPD  ML+LFGTGA +MRGAGC INDMWD D+DKKV RTA RPIA+G ++  Q+ VFL G L+  LGVLL LN+YS+ LGA S+ LV+ YPLMKR +YWPQ+ LGLTFNWGALLGW+A++GSCD SVCLPLY +G++WTL YDTIYAHQDK DD+ +G+KSTAL  G+ TK WL+GFS  M+G L++VG+ S Q  PYYA+L  +  HL  QIYT+++  P DC++KF SNR LG+++   I+   L
Sbjct:   60 AAAVVDSAPRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDQDYDKKVTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIALGAGSLLLVITYPLMKRISYWPQLALGLTFNWGALLGWSAIKGSCDPSVCLPLYFSGVMWTLIYDTIYAHQDKRDDVLIGLKSTALRFGENTKPWLSGFSVAMLGALSLVGVNSGQTAPYYAALGAVGAHLTHQIYTLDIHRPEDCWNKFISNRTLGLIVFLGIVLGNL 352

The following BLAST results are available for this feature:

BLAST of TCONS_00047064 vs. Swiss-Prot (Human)

BLAST of TCONS_00047064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
COQ2	1.048e-121	61.09	4-hydroxybenzoate polyprenyltransferase, mitochond...	[more]

You are here

TCONS_00047064 (transcript) - C. hemisphaerica