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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047032 ID=TCONS_00047032|Name=TCONS_00047032|organism=Clytia hemisphaerica|type=transcript|length=3371bp
ATTCAGTTAAAGATGACACAACAGTTCAAAGTATTGACTTTGTAATTTAG
TCCATCATACCGCGCTTCCTTTAATGtcactttttttaatgaaaaaatca
tttattttttgtcGGCTGACCGGTGAATTTTCTCTTCTAAGCTTTTATTG
TTGGGGTTTGTCATGataaaacggttttttttggTATGGAGGTTAAGTTT
AGTTattgttttgactggactcgaAAGATGCTTGACCTATAGTTAGGTAT
AAGAGTTATAAAGGTTTAATTTATTTGGTAGGATCCCTAGATCGGATCAC
TAGGCTGGTCGAGTGGTTATTCATTTCTGGGTGTTGTGTTGAAACGCTGT
AAGGAGATATTTGTGGGTATACCTTTTAGACGAATCTGAGCGGTCAGATA
AATGAATGACAGGTCATAGATAGAAAGGTTAGATATAATCTGAAACTTAA
GTCGAAACAAATCAGATTTGAGTCTAGATATTGAGAATTGATTTGGTATC
AAAGTTTTTATCTCAAAGATTGTCTTCTTAGTCTTActaaaatttattaa
atttgacaTGACTTTAACACTCTGGTCAAGTTACAAATTGAGATTTAGCA
ATAACCAGGGCAATAACTTATcgagaattttgaaataattttttatggtA
TTTTTTATAGAGATAAAGACTTGATCTTAATTGATTGTTGATTAGTCTaa
attattgattaaaaacgaaagaaaacCCCAGACTTGTTGCCTACACTTTA
ACTCTCGTCAGCAAACAAACACTTCAAAGATATTAACCATggttaaaatc
atcaaaatcgCAATGTTCAGTTTATTCATCACCATCATCTACGGTTTGTT
ATTACCGATCCCTTTATGTGACACTCGACGCAACCTCACACCTCAACAAG
TCAAATTATGCAAgaaatatcaacaaaaacatttaGAGCTGTTACTCGAT
GCGAAATTCATCTCAGAGTTTGAATGTGAACAACAATTCTCCCAGAGAAG
ATGGAATTGCACTCTCCCTCCACCTTCATCTGTTTCACCACTACTATTAC
CTAAAATGCCACTCGCTACCAGAGAGACAGCATATATCTATGCATCAACA
TCAGCTGCCATTATGCATACTATCAGTCGTGGTTGCATGGAAGGAAAATT
AGCCAATCACTGCTCGTGTTCTAAAGAAGAACGCCCTGGATCATTGAAAC
AAAGTGATGTATGGGGAGGGTGTGGTGATAATTTACCATACGGATATCAA
TTCAGTAAGAAGTTCACGGATGCTGGTGAACAACTTTCTGAAGAAACGCT
TTCCAAGTTTTCAAGAGTTTTGATGAATCTTCATAATAACGAAGCTGGAA
GATGGGCTGTTTACGAGAAATCCTTTGTTCAATGCCGATGTATCGGAGTG
TCCACAAACTGTGCTATCAATACTTGCTACCGACAACTTGGTCGCTTCAA
TAAGGTTGCTAAACATCTTGAAAACCTCTACAGGTCATCTGTACAAGTCG
AACTAAAGCAGGGAAACGATGAtggaaattccaaaaatacTGAAATCAGG
CTCGTAGAAACCAACCCTAATTATAATAAGTATTCAGCTAAAGACATGGT
TTATATTAAAGATTCACCAAGTTACTGTGAAAAGAAATTATCTATTGGGT
CGTATGGTGTAGCAGGACGATCTTGCACCAAAACAGGGAATTCGGTGAAC
GATTGTAACATGTTATGCTGTGACAGAGGTTATTATTCGAGACGTGAGAT
TGTAAAAGCCAAATGTGGTTGTAAGTTGATTTGGTGTTGTGAGGTGAAGT
GTAAAACGTGTGAGAAAGAACAGAATAACCATTACTGTAAATGAAGAGAT
TACTCATTCAATAATGGTTTTGAGAACACTGAAAGTTGCGGCACGTAACA
CAGTGAGATGGGCTACAATCGGTTCAATTGAAATTGCTCTGGAGAACATT
TAAGCATTTCGATCGGAGGCCTTTGAAATATACAGTTAGAGTGTCACACA
AGCAAAGACATGCGATTGTAGAAAAGTGTCTTTGCAACGCAGATCCAACG
CAAATTTACCAAAGCTACAGGAACCATATTGCTTTACTTTATCCTATGGG
TATTATGTGAACTAATGGAGCCGGATTCTCTATAAAGCTGGAGCTTAAAT
ATTGGGCAGAGAGTGAGAAATGACATTAAAATTGAAACGTAAAAgacatt
ttctatttttaaaaatagcaacaacaatttaaaatttatttttgctgaaa
aaataaaCTATTATTATACCGAATAATGTACATAGTAGCTATTTATTAAT
ATCGAAAAGAAATGTATCTGAAAACAATACTTATTTTCTCTTCAATGATC
GCCTTTCCATTATTAAAACTTAACATGTTTCTTGCCTGTGACCCATCCAA
ATATACTTATTTTCGATTCCGTCCGATTGTCAAGGAACTTTAATCTAATT
TACGATATTTGTCGGCAAAAAACGGAATATAATTTGATATAATATCGTAA
TATGTATAACGgaataaaatttgatataatgtgaataaaaattaatttga
gTACCTTATCCGccttttttacgccggcccttattggcgtcaCTTTTAGG
CTCCTGGCGTAATAAGGaccggcgttaaaagggccggtgtaaaaagagcc
aaaattttgcaaattttacttaaaagtggcgttaatttttcaccattttt
ctctatttaaaggattttagatctgattcgaagataaaaaattatccact
gttttactccatatttaaaacttaacaaaaatcagtgattttcaacggtt
tactactgaaaaatgatattttaatgtaaattgaagcATAAATAGCCATT
CTAACAAACTTTGGCGTTAtctacggccctaattggcgtaagcccaaaat
cagGCTGCGGCGTAAAAGGggtcggcgtaaaaagggccattACGGACATA
AAAATTTCACACAGTAGAAAATTAATgaggatttcaaaattttgaaaatt
ttaataatgTGCGTATGTAacgtgaaaaaaagaaaatgttgaaatgaaaa
tgtacaaatttaatatttacaggtaaaaaaattaaggaaatgaaaaaaaa
gaaaaagacaaaaaatttagaacaagaaacaaaacaaaatgaaagtcCTT
GAAGTCGAGGTTGTTGTCGTAACGCTTACAACTCAAACAAAAATTATGTG
GTACCAAAATATATTTGCACGAAATCGAGATTGTCCTCGAAAACGGGAGA
TCCCTTTTCAAATAATATGACAACCGTATTGATATTATTCCACCTTGAAT
ACTATATCTTTCGGAGCAATATCACCACAGTGGCACCCGCTCGAACATTC
CCTGCCAGTGAGTTGAATCAG Run BLAST on NCBI transcript from alignment at scaffold_120:227900..233402- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047032 ID=TCONS_00047032|Name=TCONS_00047032|organism=Clytia hemisphaerica|type=transcript|length=5503bp|location=Sequence derived from alignment at scaffold_120:227900..233402- (Clytia hemisphaerica)
ATTCAGTTAAAGATGACACAACAGTTCAAAGTATTGACTTTGTAATTTAG
TCCATCATACCGCGCTTCCTTTAATGTCACTTTTTTTAATGAAAAAATCA
TTTATTTTTTGTCGGCTGACCGGTGAATTTTCTCTTCTAAGCTTTTATTG
TTGGGGTTTGTCATGATAAAACGGTTTTTTTTGGTATGGAGGTTAAGTTT
AGTTATTGTTTTGACTGGACTCGAAAGATGCTTGACCTATAGTTAGGTAT
AAGAGTTATAAAGGTTTAATTTATTTGGTAGGATCCCTAGATCGGATCAC
TAGGCTGGTCGAGTGGTTATTCATTTCTGGGTGTTGTGTTGAAACGCTGT
AAGGAGATATTTGTGGGTATACCTTTTAGACGAATCTGAGCGGTCAGATA
AATGAATGACAGGTCATAGATAGAAAGGTTAGATATAATCTGAAACTTAA
GTCGAAACAAATCAGATTTGAGTCTAGATATTGAGAATTGATTTGGTATC
AAAGTTTTTATCTCAAAGATTGTCTTCTTAGTCTTACTAAAATTTATTAA
ATTTGACATGACTTTAACACTCTGGTCAAGTTACAAATTGAGATTTAGCA
ATAACCAGGGCAATAACTTATCGAGAATTTTGAAATAATTTTTTATGGTA
TTTTTTATAGAGATAAAGACTTGATCTTAATTGATTGTTGATTAGTCTAA
ATTATTGATTAAAAACGAAAGAAAACCCCAGACTTGTTGCCTACACTTTA
ACTCTCGTCAGCAAACAAACACTTCAAAGATATTAACCATGGTTAAAATC
ATCAAAATCGCAATGTTCAGGTACGAACCCCTTTTTTGCATATTATTACA
GCCTCTCCTTAACTGGAACCTCAATAACTGGAATACGTTTTAAAGCTTTC
CTTTCAGCAAGCTCTTACAAAAGGAACTTCAAAGCTCAATTACTCGAATT
TTTTTCCTATTTCGAACAATTTCTAATTCCTTCTATCCGTTCGAATTATG
GAGAGCCTTTTACTGTATCTAGGTTTTAGATTATTTTACACCCCTATCTG
TGGAACAATTTTTTCATGGAGGTAGAGTTACTCACAGCCTAAATGTGGAA
TTAGAAATTAAATTGTTGGCGGAGACCTGAACACATTTAAAATCACGAAA
TTAAAAGAAGTGTGCTAGATACCTCGTAATCCACATTACGAAATTTTGAT
AACAGTTTATTCGTGCTTTGATCATGCCGTGATAAAGATTTTGAGGTAGT
TCTTTTGACGAAATACTCGATAAGTAGTTTTTCACTTTTTTTGGTTCGTC
TACCATATCTCAAAACCCAGTCGAGCGAGTGTCTACCCATTTCAACCTTA
AAAGGCTAGTTTTAAACTATTAAACTGGTCCAAACCTCTTATACAATTTC
TATTTTTAGGCATTTTCTGTATCGCTTTACTTTCTCTATTTTCAGTTTAT
TCATCACCATCATCTACGGTTTGTTATTACCGATCCCTTTATGTGACACT
CGACGCAACCTCACACCTCAACAAGTCAAATTATGCAAGAAATATCAACA
AAAACATTTAGAGCTGTTACTCGATGCGAAATTCATCTCAGAGTTTGAAT
GTGAACAACAATTCTCCCAGAGAAGATGGAATTGCACTCTCCCTCCACCT
TCATCTGTTTCACCACTACTATTACCTAAAATGCCACTCGGTAAGATTTT
AAACTTATGCGTGGTACAGTCTCTTGTCTCGATTGCTGCTTTACGACAAA
CTTTTGAATCTATATTTTTAGTGAAGTGACTGTAAATTGAATCCAACCAT
CCATTACAGGCATTACAAGAACAAATTTGCTTTCCTTCTACAGCGTTTGC
GAATTATGAATTTCTTTGGATTCTTAATTTCTACTGTAAGCACAGTTTAA
TTTCCCGTAGTTAGTACTAGGAAGTTTTTAGGTTTCTCTAAATTATATCT
AAATTTCAAAGAACAATCATCCTAACCTCGTTACTTATAAAAAACTTTCC
TCAATTTTTTCTCAAACATAGCTACCAGAGAGACAGCATATATCTATGCA
TCAACATCAGCTGCCATTATGCATACTATCAGTCGTGGTTGCATGGAAGG
AAAATTAGCCAATCACTGCTCGTGTTCTAAAGAAGAACGCCCTGGATCAT
TGAAACAAAGTGATGTATGGGGAGGGTGTGGTGATAATTTACCATACGGA
TATCAATTCAGTAAGAAGTTCACGGATGCTGGTGAACAACTTTCTGAAGA
AACGCTTTCCAAGTTTTCAAGAGTTTTGATGAATCTTCATAATAACGAAG
CTGGAAGATGGGTAAGTGGAATCGAAATTTTTTGTTAAAAATGTAATAGA
ATCACCGTATTTTTTTTGGTGAGTTCCTGGTGAAGAGCTGAATTTTTTTT
AGTAGATAGTAACCTCACCGTGAAACCAACTGAATAATCCTCTAAAAAGA
CACGTCACTTTTTCATTGTAAATCCGTCCAAAAATTACGGTGATTTTTTG
TTGGATTGGAAATTCGCGATGGGTAGTCGAAAATGTTTTGACTCGTTGTA
GATAAATTAGATACTTGGATGCATACTTTGATCGATAACATGTAAAGAAT
TTTACATCTCCTTTGTTACAATTTGGTGGTTGTAATCCTTATAAGGTCAT
GTAAGTTTTCAAATCTTTTCATCAACCGTCGAGTCAAAGAAGGGAAATGC
TTTAAAATCCTGAAAATCAAATGAAACGCTACAATATTCAGGCCCCCATT
TCTGACATCCAATAACAATTTTTTTAGAGAAAGCCCCGCCTCTGCTAAAA
CCAAGCAGGAACCAAAACAGGAAATGCATGTATTCGCTTCTCAGATATTT
TGAAATGATTTTAAAATACCTTTATATTCTTAACACAAACAAACAGAAGT
TTTAACTTCTCCTAAATATCCCTCACTGTATCCTGTAGTTGATCACGTTC
CCACGTGCTTGCAATAAACATCAAAAATTATCAAACAATGGAGACTCTTT
AACTTGAACTTCTATAGCTCGAACAACTTTACTAATTTCCATAACTCGAA
CATACATGCGTTTTCGACTTGAAGACTTCGCTGTACTTGTAACTGTCTCT
TATTTTTACCATAAATGACTGTGTCTTGTGTAGGAGCTGTCTCCCTAATT
ATACTTGTGTGCCATATCTAACACCCCAAATCGGTTATATTATTATTAAT
ATCGGTTGTATTGACCCGGAGAGGAACTTTTCAAGTAATTGGGATAAAAG
TTCCCACCAAAATAGCGTCACAAACTAATGAAGTCCATTGTTTTCAGCTC
AAAAGAAAGACAGTCGGATGAAATTTTTATGGGGCCCATAACCGTGATTC
GTCATTTGGCTAAAGTGACTTCTGAAATCTGAAATTGGATAGAGTTATGA
GAATATAAATTGTATCGTGGTCCTCCTTTTCCTTCGTACACTTTATAATT
ATATATTCAAGTCTACTTTCTTTCTTCCATTCTACAGGCTGTTTACGAGA
AATCCTTTGTTCAATGCCGATGTATCGGAGTGTCCACAAACTGTGCTATC
AATACTTGCTACCGACAACTTGGTCGCTTCAATAAGGTTGCTAAACATCT
TGAAAACCTCTACAGGTCATCTGTACAAGTCGAACTAAAGCAGGGAAACG
ATGATGGAAATTCCAAAAATACTGAAATCAGGCTCGTAGAAACCAACCCT
AATTATAATAAGTATTCAGCTAAAGACATGGTTTATATTAAAGATTCACC
AAGTTACTGTGAAAAGAAATTATCTATTGGGTCGTATGGTGTAGCAGGAC
GATCTTGCACCAAAACAGGGAATTCGGTGAACGATTGTAACATGTTATGC
TGTGACAGAGGTTATTATTCGAGACGTGAGATTGTAAAAGCCAAATGTGG
TTGTAAGTTGATTTGGTGTTGTGAGGTGAAGTGTAAAACGTGTGAGAAAG
AACAGAATAACCATTACTGTAAATGAAGAGATTACTCATTCAATAATGGT
TTTGAGAACACTGAAAGTTGCGGCACGTAACACAGTGAGATGGGCTACAA
TCGGTTCAATTGAAATTGCTCTGGAGAACATTTAAGCATTTCGATCGGAG
GCCTTTGAAATATACAGTTAGAGTGTCACACAAGCAAAGACATGCGATTG
TAGAAAAGTGTCTTTGCAACGCAGATCCAACGCAAATTTACCAAAGCTAC
AGGAACCATATTGCTTTACTTTATCCTATGGGTATTATGTGAACTAATGG
AGCCGGATTCTCTATAAAGCTGGAGCTTAAATATTGGGCAGAGAGTGAGA
AATGACATTAAAATTGAAACGTAAAAGACATTTTCTATTTTTAAAAATAG
CAACAACAATTTAAAATTTATTTTTGCTGAAAAAATAAACTATTATTATA
CCGAATAATGTACATAGTAGCTATTTATTAATATCGAAAAGAAATGTATC
TGAAAACAATACTTATTTTCTCTTCAATGATCGCCTTTCCATTATTAAAA
CTTAACATGTTTCTTGCCTGTGACCCATCCAAATATACTTATTTTCGATT
CCGTCCGATTGTCAAGGAACTTTAATCTAATTTACGATATTTGTCGGCAA
AAAACGGAATATAATTTGATATAATATCGTAATATGTATAACGGAATAAA
ATTTGATATAATGTGAATAAAAATTAATTTGAGTACCTTATCCGCCTTTT
TTACGCCGGCCCTTATTGGCGTCACTTTTAGGCTCCTGGCGTAATAAGGA
CCGGCGTTAAAAGGGCCGGTGTAAAAAGAGCCAAAATTTTGCAAATTTTA
CTTAAAAGTGGCGTTAATTTTTCACCATTTTTCTCTATTTAAAGGATTTT
AGATCTGATTCGAAGATAAAAAATTATCCACTGTTTTACTCCATATTTAA
AACTTAACAAAAATCAGTGATTTTCAACGGTTTACTACTGAAAAATGATA
TTTTAATGTAAATTGAAGCATAAATAGCCATTCTAACAAACTTTGGCGTT
ATCTACGGCCCTAATTGGCGTAAGCCCAAAATCAGGCTGCGGCGTAAAAG
GGGTCGGCGTAAAAAGGGCCATTACGGACATAAAAATTTCACACAGTAGA
AAATTAATGAGGATTTCAAAATTTTGAAAATTTTAATAATGTGCGTATGT
AACGTGAAAAAAAGAAAATGTTGAAATGAAAATGTACAAATTTAATATTT
ACAGGTAAAAAAATTAAGGAAATGAAAAAAAAGAAAAAGACAAAAAATTT
AGAACAAGAAACAAAACAAAATGAAAGTCCTTGAAGTCGAGGTTGTTGTC
GTAACGCTTACAACTCAAACAAAAATTATGTGGTACCAAAATATATTTGC
ACGAAATCGAGATTGTCCTCGAAAACGGGAGATCCCTTTTCAAATAATAT
GACAACCGTATTGATATTATTCCACCTTGAATACTATATCTTTCGGAGCA
ATATCACCACAGTGGCACCCGCTCGAACATTCCCTGCCAGTGAGTTGAAT
CAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00047032-exon-scaffold_120-1575043694:232583..233402 | TCONS_00047032-exon-scaffold_120-1575043694:232583..233402 | Clytia hemisphaerica | exon |
| TCONS_00047032-exon-scaffold_120-1575043694:231713..231957 | TCONS_00047032-exon-scaffold_120-1575043694:231713..231957 | Clytia hemisphaerica | exon |
| TCONS_00047032-exon-scaffold_120-1575043694:231092..231381 | TCONS_00047032-exon-scaffold_120-1575043694:231092..231381 | Clytia hemisphaerica | exon |
| TCONS_00047032-exon-scaffold_120-1575043694:227900..229915 | TCONS_00047032-exon-scaffold_120-1575043694:227900..229915 | Clytia hemisphaerica | exon |
| TCONS_00047032-exon-scaffold_120-1510915933:232583..233402 | TCONS_00047032-exon-scaffold_120-1510915933:232583..233402 | Clytia hemisphaerica | exon |
| TCONS_00047032-exon-scaffold_120-1510915933:231713..231957 | TCONS_00047032-exon-scaffold_120-1510915933:231713..231957 | Clytia hemisphaerica | exon |
| TCONS_00047032-exon-scaffold_120-1510915933:231092..231381 | TCONS_00047032-exon-scaffold_120-1510915933:231092..231381 | Clytia hemisphaerica | exon |
| TCONS_00047032-exon-scaffold_120-1510915933:227900..229915 | TCONS_00047032-exon-scaffold_120-1510915933:227900..229915 | Clytia hemisphaerica | exon |
| TCONS_00047032-exon-scaffold_120-1491911889:232583..233402 | TCONS_00047032-exon-scaffold_120-1491911889:232583..233402 | Clytia hemisphaerica | exon |
| TCONS_00047032-exon-scaffold_120-1491911889:231713..231957 | TCONS_00047032-exon-scaffold_120-1491911889:231713..231957 | Clytia hemisphaerica | exon |
| TCONS_00047032-exon-scaffold_120-1491911889:231092..231381 | TCONS_00047032-exon-scaffold_120-1491911889:231092..231381 | Clytia hemisphaerica | exon |
| TCONS_00047032-exon-scaffold_120-1491911889:227900..229915 | TCONS_00047032-exon-scaffold_120-1491911889:227900..229915 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:227900..233402 - |
Blast
BLAST of TCONS_00047032 vs. Swiss-Prot (Human)
Match: WNT5A (Protein Wnt-5a OS=Homo sapiens GN=WNT5A PE=1 SV=2) HSP 1 Score: 228.409 bits (581), Expect = 1.166e-65 Identity = 121/310 (39.03%), Postives = 178/310 (57.42%), Query Frame = 3
Query: 861 PLCDTRRNLTPQQVKLCKKYQQKHLELLLDAKFISEFECEQQFSQRRWNCTXXXXXXXXXXXXXXXXXATRETAYIYASTSAAIMHTISRGCMEGKLANHCSCSKEERPGSLKQSDVWGGCGDNLPYGYQFSKKFTDAGEQ--LSEETLSKFSRVLMNLHNNEAGRWAVYEKSFVQCRCIGVSTNCAINTCYRQLGRFNKVAKHLENLYRSSVQVELKQGNDDGNSKNTEIRLVETNPNYNKYSAKDMVYIKDSPSYCEKKLSIGSYGVAGRSCTKTGNSVNDCNMLCCDRGYYSRREIVKAKCGCKLIW 1784
PLC L+ Q KLC YQ H++ + + EC+ QF RRWNC+ +SV ++ +RETA+ YA ++A +++ +SR C EG+L+ C CS+ RP L + +WGGCGDN+ YGY+F+K+F DA E+ + + + +R+LMNLHNNEAGR VY + V C+C GVS +C++ TC+ QL F KV L+ Y S+ + L N+ +LV+ N +N + +D+VYI SP YC + S GS G GR C KT ++ C ++CC RGY + + +C CK W
Sbjct: 67 PLCSQLAGLSQGQKKLCHLYQD-HMQYIGEGAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQI---GSRETAFTYAVSAAGVVNAMSRACREGELST-CGCSRAARPKDLPRDWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQLADFRKVGDALKEKYDSAAAMRL----------NSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGCELMCCGRGYDQFKTVQTERCHCKFHW 361
The following BLAST results are available for this feature:
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