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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047008 ID=TCONS_00047008|Name=TCONS_00047008|organism=Clytia hemisphaerica|type=transcript|length=1505bp GCCATCCGCCGtcgccatctttaatttttgcTAGACTAACAACAGGTCGT ATTCGATCGCTCTTGATAAGAGCACAGCGATATGAACACAAAAATGGgcg gaaaatatcaaaaactatttCTTTATTAATTTTCACCAGTCAGTTCActa ttttcacaataaaaagGAAATGAGAAAcaattcaattttgatttacaaaT TGGACAAAATTTCCTAGTTGAAAGATGCAAGGAGCTTGCCTTTTATGTAT TGAGTATTTTATTTGTCTGACCGCCCCTCTTGCGTCTCTTATCGCCGCCA CAGTTTTCGTTCTGCAAATTATTCATCAGAGCCTACAAATCTGTAGGATA AATTTTCAAGAATCCTTTCGGCCAAGACGTACACAGAGAAACAGCCAAGA TGACGTCAAAAATCACTCGTGAAGCCCTATACGAATGCGTAACTGCAATC CGCACCGGATCCACTGATAAGAAACGCAAGTTTACTGAAACTGTTGAGCT TCAAATTGGATTGAAGAACTACGATCCACAGAAGGACAAGCGTTTCTCTG GAACTGTCAAATTGAAGAACATTCCTCGACCAAAATTAAACATTTGCGTT TTGGGAGATGAATCTCACTGTGATCAAGCTAAAGCTAGCGGACTTCCATG GATGGATGTGGAAGCTCTCAAGAAGTTGAACAAGGATAAGAAACTTGTCA AAAAGCTTGCCAAAAAATATGATGGTTTTGTTGCATCTGACACTCTGATC AAACAAATCCCAAGGCTTCTGGGTCCAGGATTAAACAAAGCTGGTAAATT CCCAACTATGGTCACCCATACTGAAAAATTGACAGACAAAATCAATGAAA TGAAATCTACCATCAAATTCCAAATGAAGAAGGTCTTGTGTTTGGCTGTT GCTGTCGGCCATGTTGAAATGTCAGATGACGAAATGGCTCAAAACATCTT CTTGGCTGTCAACTTTTTGGTTTCTCTTCTGAAGAAAAACTGGCAAAATG TTCGATCTCTCCACGTNCTTCTTGGCTGTCAACTTTTTGGTTTCTCTTCT GAAGAAAAACTGGCAAAACGTTCGATCTCTCCACGTCAAGAGTACTATGG GAAAACCCCACAGATTGTACTAAATCAATTGGCTGtataataaatttaaa aaatcaaatttaaagttttctgTTCTTAATTACTCCCCGAAAATCCCAGA AATATGcctgaaaaactgtttttttggcattttctcgagattttatcatt ggttttttgctttttgcacATACGTATGTATTaccaatgcccaaaatgtg cctgattcaaatttttggggaaaacatttttccggccgaaaataccggaa attgccgtttttgcagattttatACATTGTAGTAGAGGGGGGGTTTAgtg ttcttttttttctttttaggtcGCTctattttttagtcaaagcacttgtt atacatttttggaaagctaaggtttgattgtttttggaaggtaaaaacag tatga Run BLAST on NCBI protein sequence of TCONS_00047008-protein >TCONS_00047008-protein ID=TCONS_00047008-protein|Name=TCONS_00047008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MTSKITREALYECVTAIRTGSTDKKRKFTETVELQIGLKNYDPQKDKRFS GTVKLKNIPRPKLNICVLGDESHCDQAKASGLPWMDVEALKKLNKDKKLV KKLAKKYDGFVASDTLIKQIPRLLGPGLNKAGKFPTMVTHTEKLTDKINE MKSTIKFQMKKVLCLAVAVGHVEMSDDEMAQNIFLAVNFLVSLLKKNWQN VRSLHXLLGCQLFGFSSEEKLAKRSISPRQEYYGKTPQIVLNQLAV Run BLAST on NCBI transcript from alignment at scaffold_120:315976..319443+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047008 ID=TCONS_00047008|Name=TCONS_00047008|organism=Clytia hemisphaerica|type=transcript|length=3468bp|location=Sequence derived from alignment at scaffold_120:315976..319443+ (Clytia hemisphaerica) GCCATCCGCCGtcgccatctttaatttttgcTAGACTAACAACAGGTCGT
ATTCGATCGCTCTTGATAAGAGCACAGCGATATGAACACAAAAATGGgcg
gaaaatatcaaaaactatttCTTTATTAATTTTCACCAGTCAGTTCActa
ttttcacaataaaaagGAAATGAGAAAcaattcaattttgatttacaaaT
TGGACAAAATTTCCTAGTTGAAAGATGCAAGGAGCTTGCCTTTTATGTAT
TGAGTATTTTATTTGTCTGACCGCCCCTCTTGCGTCTCTTATCGCCGCCA
CAGTTTTCGTTCTGCAAATTATTCATCAGAGCCTACAAATCTGTAGGATA
AATTTTCAAGAATCCTTTCGGCCAAGACGTACACAGAGAAACAGCCAAGA
TGACGTGAGTACAAAAACCTCTGGTTTTATTCTTGCATTATCCTTCTGAA
TCGAGCCCTCAACCCTTCAGAACAGTCCTAGTTAACAAGCCCTGACATCT
TACTTTACAATTTCACCTTTATTTTAGGTCAAAAATCACTCGTGAAGCCC
TATACGAATGCGTAACTGCAATCCGCACCGGATCCACTGATAAGAAACGC
AAGTTTACTGAAACTGTTGAGCTTCAAATTGGATTGAAGAACTACGATCC
ACAGAAGGACAAGCGTTTCTCTGGAACTGTCAAATTGAAGAACATTCCTC
GACCAAAATTAAACATTTGCGTTTTGGGAGATGAATCTCACTGTGATCAA
GCTAAAGCTAGCGGACTTCCATGGATGGATGTGGAAGCTCTCAAGAAGTT
GAACAAGGATAAGAAACTTGTCAAAAAGCTTGGTAAGTTCTTGGTTGTTT
CTGAAGATACTTAATGTACCAATGATGAGTTACCACTTCGGTCCGTGTTT
TTGATCTATATGATAACACTGAAGTTCTGACGGTACacaattgaattatt
tttcaaaagatttgtatGATGGAAATTAATATTTATGATGACTATCACTT
CCCGTGTTTTTGATCTATATGATAACACTGAAGTTCTGATAAATATTAGA
TAATGTTTGCATAATTAGGATCTATTATGCTAGCTACTTGGAATGTATAT
ATATATGATGAGTTCTCACTTCGGTCCGTGTTTTTGATCTATATGATAAC
ACTGAAGTTCTGACGGTACACAATTGAAATGTTTGTTAAAAGATTTGTAT
GATGGAAAATGATATTTATGATGACTATCACTTCCCGTGTTTTTGAACTA
TATGATAACACTGAAGTTCTGATAAATATTGATAATGTTTGTATAATTAG
GATGATGTATTCTCAACTAcaattgagctagaatctgacaatgtctgtat
tTCCTTCTGAAAACcctggggcagcctggagactttaaaaaattgtgcga
tttggctgaaattttgcaccttgggtgaatatctgggggtgtttttttca
tttatcaaaaattttgatttttggggcctggggacaagtttttcgtcaaa
acgaggctggagaCTTCATAAATTGttcaatttggctgaaattttgcaca
cttgttccatgggtgaatatctgggggtctacaattgggcctatgaatag
tttgaagccactgaagttgagcctagtgcgttgcgcacgtttgACTATTA
TACTAGCTACTTGGAATGTATATATGATGAGTTCTTACTTCGGTCCGTGT
TTTTGATCTACTTGATAACACTGAAGTTCTGACAACTATTCAAGTCATTA
TGTTTTACTATTCAATAAGTTTACAATAAAAGGCATTCATTGATGTAACT
ATATTTGCTACTCTCGACTGATTGGATGACGAGTACCCACCAAGATCTCT
GAGAATGTGACTTATAACAAATTCTTTCCTGTTTGACTATTATACTAGCT
ACTTGGAATGTATATATGATGAGTTCTTACTTCGGTCCGTGTTTTTGATC
TACTTGATAACACTGAAGTTCTGACAACTTTTCAAGTCATTATGTTTTAC
TATTCAATAAGTTTACAATAAAAGGAAAAGGCATTCATTGATGTAATTAT
ATTTGCTACTCTCGACTGATTGGATGACGAGTACCCACCAAGATCTCTGA
GAATGTGACTTGTAACAAATTCTTTCCTCCTTGACCTTAACctttatatt
cactttttttatctttgttgcCTTCGATGATGTTATCTTATATTTGCTAC
TCTCGACAGCTTGGATGACGATTAACCACCAAGATCTCTGAGAAGGCAAT
CTTAACATTTTATGCTTAATCCTCTTTCAATTCTCTATGCTGGACTGCTT
GTTTTGTGATGATAATGCCGGAATATTGGTTTCTATTTTACAGNGGACTG
CTTGTTTTGTGATGATAGTGCCAGAATATTGGTTTCTATTTTACAGCCAA
AAAATATGATGGTTTTGTTGCATCTGACACTCTGATCAAACAAATCCCAA
GGCTTCTGGGTCCAGGATTAAACAAAGCTGGTAAATTCCCAACTATGGTC
ACCCATACTGAAAAATTGACAGACAAAATCAATGAAATGAAATCTACCAT
CAAATTCCAAATGAAGAAGGTAAGGTTACCAGGACCTTGGCATATCTAGC
TTCAGTGCATGATTGTAAGGCCAAGCAACTGGAAGGCATTTGCCGGACTC
TTTCATCTGGAGTCTTAAAACTTGAGATGTTTCTGTATTTCTTCTAATCT
ACCAGCTTTAACCCATATCACTAATCTATAGCAATAAATTTATTTCCTgt
tgaatttgttttgaaatgatcTTTTATTGTGCAGTGGTTTTTGGAATGTC
GCACTGTACCACTATAAAGATTATTACATAATTTAAACTATTTAGGTCTT
GTGTTTGGCTGTTGCTGTCGGCCATGTTGAAATGTCAGATGACGAAATGG
CTCAAAACATCTTCTTGGCTGTCAACTTTTTGGTTTCTCTTCTGAAGAAA
AACTGGCAAAATGTTCGATCTCTCCACGTNCTTCTTGGCTGTCAACTTTT
TGGTTTCTCTTCTGAAGAAAAACTGGCAAAACGTTCGATCTCTCCACGTC
AAGAGTACTATGGGAAAACCCCACAGATTGTACTAAATCAATTGGCTGta
taataaatttaaaaaatcaaatttaaagttttctgTTCTTAATTACTCCC
CGAAAATCCCAGAAATATGcctgaaaaactgtttttttggcattttctcg
agattttatcattggttttttgctttttgcacATACGTATGTATTaccaa
tgcccaaaatgtgcctgattcaaatttttggggaaaacatttttccggcc
gaaaataccggaaattgccgtttttgcagattttatACATTGTAGTAGAG
GGGGGGTTTAgtgttcttttttttctttttaggtcGCTctattttttagt
caaagcacttgttatacatttttggaaagctaaggtttgattgtttttgg
aaggtaaaaacagtatga Coding sequence (CDS) from alignment at scaffold_120:315976..319443+ >TCONS_00047008 ID=TCONS_00047008|Name=TCONS_00047008|organism=Clytia hemisphaerica|type=CDS|length=2964bp|location=Sequence derived from alignment at scaffold_120:315976..319443+ (Clytia hemisphaerica) ATGACGTCAAAAATCACTCGTGAAGCCCTATACGAATGCGTAACTGCAAT CCGCACCGGATCCACTGATAAGAAACGCAAGTTTACTGAAACTGTTGAGC TTCAAATTGGATTGAAGAACTACGATCCACAGAAGGACAAGCGTTTCTCT GGAACTGTCAAATTGAAGAACATTCCTCGACCAAAATTAAACATTTGCGT TTTGGGAGATGAATCTCACTGTGATCAAGCTAAAGCTAGCGGACTTCCAT GGATGGATGTGGAAGCTCTCAAGAAGTTGAACAAGGATAAGAAACTTGTC AAAAAGCTTGCCAAAAAATATGATGGTTTTGTTGCATCTGACACTCTGAT CAAACAAATCCCAAGGCTTCTGGGTCCAGGATTAAACAAAGCTGGTAAAT TCCCAACTATGGTCACCCATACTGAAAAATTGACAGACAAAATCAATGAA ATGAAATCTACCATCAAATTCCAAATGAAGAAGGTCTTGTGTTTGGCTGT TGCTGTCGGCCATGTTGAAATGTCAGATGACGAAATGGCTCAAAACATCT TCTTGGCTGTCAACTTTTTGGTTTCTCTTCTGAAGAAAAACTGGCAAAAT GTTCGATCTCTCCACGTNCTTCTTGGCTGTCAACTTTTTGGTTTCTCTTC TGAAGAAAAACTGGCAAAACGTTCGATCTCTCCACGTCAAGAGTACTATG GGAAAACCCCACAGATTGTACTAAATCAATTGGCTGtataaATGACGTCA AAAATCACTCGTGAAGCCCTATACGAATGCGTAACTGCAATCCGCACCGG ATCCACTGATAAGAAACGCAAGTTTACTGAAACTGTTGAGCTTCAAATTG GATTGAAGAACTACGATCCACAGAAGGACAAGCGTTTCTCTGGAACTGTC AAATTGAAGAACATTCCTCGACCAAAATTAAACATTTGCGTTTTGGGAGA TGAATCTCACTGTGATCAAGCTAAAGCTAGCGGACTTCCATGGATGGATG TGGAAGCTCTCAAGAAGTTGAACAAGGATAAGAAACTTGTCAAAAAGCTT GCCAAAAAATATGATGGTTTTGTTGCATCTGACACTCTGATCAAACAAAT CCCAAGGCTTCTGGGTCCAGGATTAAACAAAGCTGGTAAATTCCCAACTA TGGTCACCCATACTGAAAAATTGACAGACAAAATCAATGAAATGAAATCT ACCATCAAATTCCAAATGAAGAAGGTCTTGTGTTTGGCTGTTGCTGTCGG CCATGTTGAAATGTCAGATGACGAAATGGCTCAAAACATCTTCTTGGCTG TCAACTTTTTGGTTTCTCTTCTGAAGAAAAACTGGCAAAATGTTCGATCT CTCCACGTNCTTCTTGGCTGTCAACTTTTTGGTTTCTCTTCTGAAGAAAA ACTGGCAAAACGTTCGATCTCTCCACGTCAAGAGTACTATGGGAAAACCC CACAGATTGTACTAAATCAATTGGCTGtataaATGACGTCAAAAATCACT CGTGAAGCCCTATACGAATGCGTAACTGCAATCCGCACCGGATCCACTGA TAAGAAACGCAAGTTTACTGAAACTGTTGAGCTTCAAATTGGATTGAAGA ACTACGATCCACAGAAGGACAAGCGTTTCTCTGGAACTGTCAAATTGAAG AACATTCCTCGACCAAAATTAAACATTTGCGTTTTGGGAGATGAATCTCA CTGTGATCAAGCTAAAGCTAGCGGACTTCCATGGATGGATGTGGAAGCTC TCAAGAAGTTGAACAAGGATAAGAAACTTGTCAAAAAGCTTGCCAAAAAA TATGATGGTTTTGTTGCATCTGACACTCTGATCAAACAAATCCCAAGGCT TCTGGGTCCAGGATTAAACAAAGCTGGTAAATTCCCAACTATGGTCACCC ATACTGAAAAATTGACAGACAAAATCAATGAAATGAAATCTACCATCAAA TTCCAAATGAAGAAGGTCTTGTGTTTGGCTGTTGCTGTCGGCCATGTTGA AATGTCAGATGACGAAATGGCTCAAAACATCTTCTTGGCTGTCAACTTTT TGGTTTCTCTTCTGAAGAAAAACTGGCAAAATGTTCGATCTCTCCACGTN CTTCTTGGCTGTCAACTTTTTGGTTTCTCTTCTGAAGAAAAACTGGCAAA ACGTTCGATCTCTCCACGTCAAGAGTACTATGGGAAAACCCCACAGATTG TACTAAATCAATTGGCTGtataaATGACGTCAAAAATCACTCGTGAAGCC CTATACGAATGCGTAACTGCAATCCGCACCGGATCCACTGATAAGAAACG CAAGTTTACTGAAACTGTTGAGCTTCAAATTGGATTGAAGAACTACGATC CACAGAAGGACAAGCGTTTCTCTGGAACTGTCAAATTGAAGAACATTCCT CGACCAAAATTAAACATTTGCGTTTTGGGAGATGAATCTCACTGTGATCA AGCTAAAGCTAGCGGACTTCCATGGATGGATGTGGAAGCTCTCAAGAAGT TGAACAAGGATAAGAAACTTGTCAAAAAGCTTGCCAAAAAATATGATGGT TTTGTTGCATCTGACACTCTGATCAAACAAATCCCAAGGCTTCTGGGTCC AGGATTAAACAAAGCTGGTAAATTCCCAACTATGGTCACCCATACTGAAA AATTGACAGACAAAATCAATGAAATGAAATCTACCATCAAATTCCAAATG AAGAAGGTCTTGTGTTTGGCTGTTGCTGTCGGCCATGTTGAAATGTCAGA TGACGAAATGGCTCAAAACATCTTCTTGGCTGTCAACTTTTTGGTTTCTC TTCTGAAGAAAAACTGGCAAAATGTTCGATCTCTCCACGTNCTTCTTGGC TGTCAACTTTTTGGTTTCTCTTCTGAAGAAAAACTGGCAAAACGTTCGAT CTCTCCACGTCAAGAGTACTATGGGAAAACCCCACAGATTGTACTAAATC AATTGGCTGtataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00047008-exon-scaffold_120-1491911889:315976..316379 | TCONS_00047008-exon-scaffold_120-1491911889:315976..316379 | Clytia hemisphaerica | exon |
TCONS_00047008-exon-scaffold_120-1510915933:315976..316379 | TCONS_00047008-exon-scaffold_120-1510915933:315976..316379 | Clytia hemisphaerica | exon |
TCONS_00047008-exon-scaffold_120-1575043694:315976..316379 | TCONS_00047008-exon-scaffold_120-1575043694:315976..316379 | Clytia hemisphaerica | exon |
TCONS_00047008-exon-scaffold_120-1491911889:316503..316807 | TCONS_00047008-exon-scaffold_120-1491911889:316503..316807 | Clytia hemisphaerica | exon |
TCONS_00047008-exon-scaffold_120-1510915933:316503..316807 | TCONS_00047008-exon-scaffold_120-1510915933:316503..316807 | Clytia hemisphaerica | exon |
TCONS_00047008-exon-scaffold_120-1575043694:316503..316807 | TCONS_00047008-exon-scaffold_120-1575043694:316503..316807 | Clytia hemisphaerica | exon |
TCONS_00047008-exon-scaffold_120-1491911889:318372..318544 | TCONS_00047008-exon-scaffold_120-1491911889:318372..318544 | Clytia hemisphaerica | exon |
TCONS_00047008-exon-scaffold_120-1510915933:318372..318544 | TCONS_00047008-exon-scaffold_120-1510915933:318372..318544 | Clytia hemisphaerica | exon |
TCONS_00047008-exon-scaffold_120-1575043694:318372..318544 | TCONS_00047008-exon-scaffold_120-1575043694:318372..318544 | Clytia hemisphaerica | exon |
TCONS_00047008-exon-scaffold_120-1491911889:318821..319443 | TCONS_00047008-exon-scaffold_120-1491911889:318821..319443 | Clytia hemisphaerica | exon |
TCONS_00047008-exon-scaffold_120-1510915933:318821..319443 | TCONS_00047008-exon-scaffold_120-1510915933:318821..319443 | Clytia hemisphaerica | exon |
TCONS_00047008-exon-scaffold_120-1575043694:318821..319443 | TCONS_00047008-exon-scaffold_120-1575043694:318821..319443 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_120 | supercontig | scaffold_120:315976..319443 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0006412 | translation |
Vocabulary: Molecular Function
Term | Definition |
GO:0003723 | RNA binding |
GO:0003735 | structural constituent of ribosome |
Vocabulary: Cellular Component
Term | Definition |
GO:0015934 | large ribosomal subunit |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006412 |
translation |
cellular_component |
GO:0015934 |
large ribosomal subunit |
molecular_function |
GO:0003723 |
RNA binding |
molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
BLAST of TCONS_00047008 vs. Swiss-Prot (Human)
Match: RL10A (60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2) HSP 1 Score: 289.271 bits (739), Expect = 2.026e-94 Identity = 149/206 (72.33%), Postives = 182/206 (88.35%), Query Frame = 1
Query: 400 MTSKITREALYECVTAIRTGSTDKKRKFTETVELQIGLKNYDPQKDKRFSGTVKLKNIPRPKLNICVLGDESHCDQAKASGLPWMDVEAXXXXXXXXXXXXXXXXXYDGFVASDTLIKQIPRLLGPGLNKAGKFPTMVTHTEKLTDKINEMKSTIKFQMKKVLCLAVAVGHVEMSDDEMAQNIFLAVNFLVSLLKKNWQNVRSLHV 1017
M+SK++R+ LYE V + G+ K+RKF ETVELQI LKNYDPQKDKRFSGTV+LK+ PRPK ++CVLGD+ HCD+AKA +P MD+EALKKLNK+KKLVKKLAKKYD F+AS++LIKQIPR+LGPGLNKAGKFP+++TH E + K++E+KSTIKFQMKKVLCLAVAVGHV+M+DDE+ NI LAVNFLVSLLKKNWQNVR+L++
Sbjct: 1 MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYI 206
The following BLAST results are available for this feature:
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