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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046967 ID=TCONS_00046967|Name=TCONS_00046967|organism=Clytia hemisphaerica|type=transcript|length=416bp
AAAACTCACTCTATCAATACTTCCCTGGACACTCTTTATAGCCACCGTAT
GCCGTACATGAAGGACTTCAAAAACGATACCCAACGAATCAAATACATGC
AAGACAATTATTTCTCATTCATATTCTCCCGTCATCCATTTGATCGACTC
TACTCAGTTTACAGAAACAAATTTCAGAATCCAGTGGTCAAAAGATCAAG
TTTCCTGCATTATTTTGGTCCAATCATTCTTAAAGTAACAGGAAAAAATC
CAAACACTCACTCGAAGAAAATAATGCATGGAATCGAGTATTATGATatc
acttttgaagaatttttaacgtttttaacaTTTGGTGGTTATGACGCAGA
TGATCACTGGGCGCCACAGACTTCATTGTGCCAAATATGTAAATACGAAT
TGGATTTCATTGGTAG Run BLAST on NCBI protein sequence of TCONS_00046967-protein >TCONS_00046967-protein ID=TCONS_00046967-protein|Name=TCONS_00046967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
KTHSINTSLDTLYSHRMPYMKDFKNDTQRIKYMQDNYFSFIFSRHPFDRL
YSVYRNKFQNPVVKRSSFLHYFGPIILKVTGKNPNTHSKKIMHGIEYYDI
TFEEFLTFLTFGGYDADDHWAPQTSLCQICKYELDFIG Run BLAST on NCBI transcript from alignment at scaffold_119:87938..89935+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046967 ID=TCONS_00046967|Name=TCONS_00046967|organism=Clytia hemisphaerica|type=transcript|length=1998bp|location=Sequence derived from alignment at scaffold_119:87938..89935+ (Clytia hemisphaerica)
AAAACTCACTCTATCAATACTTCCCTGGACACTGTGAGTATTACCATAGT
CCGTATGAAAATCACTACTCTGGaagcttaagggctctggtcatagtgaa
aaatcaatttcagaatttaaagataaaaccttatgttttcgctcctttga
catgtttaagaacaaactacttttgaaaaaatgaatttaagtaattacat
tatgagtaattaaggaataagtgtggcatgcatggaccttaataaaacgt
cataacgacgctattcatatactttttcNCCCAAAcctttattgttttaa
ctttttgttagcttatTCTGTTTTtaatatcaaaaaatcaaaatcgattt
gctcagtttttgatcacgttactaagtactcctcttgggattggtttatg
atttaatcacatgatcaaaaagtgagaaaacaaactaatttctcatcGCA
AGTTTGAGTAAGAAACAAAAGAGACAAACAAAATCCGTTCAGGCTGTGGT
GTTCCatattacacccctgtatcattGACTTAATGGAGGGAGACATACGA
ACTCGATCATCTGGGTGGTATTAGTCTTTTTTCGTCAGTGTTTTGGTGCT
AAATGACGTTATTTCGGTTTCATACCATGGAGTGgacaaaataaggattt
taGCGATGTTTTCTGCTTAGCGAATTTAAATTTCTGAAAACCAGTAGGGA
CTCTCAAAACTTTAGGTCACTTTGTCATTGGCAATATGACGTGAGCAGCG
TTTTCAAAATAAGGATAATGTTTCGAAGATTTGTAATTTTTACCATATAA
TCGGGTGCAACATGGGTTATGATACAGGGGtatgtttgaaattattacaa
agcaatgtttttgtttacaacagccctgtctcacagtcccggtggaattt
ttccctcagttgggataaaaattcttattaaaagCCCATGAATATAGAAA
TTTCATTGTTCAAAGGTTGAAAAATCCAATGGGGGTGGTTTTGGAGTCCA
ATTTTTAATcgttgaatttcgaatgggtaTAAAATCATTGTCAATTTCCT
AGTGAGACTtcaattccagggtattttcccaccggggacgaaatttttgc
taaaatttccagtggggcttgagtcccagcgggtctgtgacactcTTGGT
gttttacatgtttaaaggaagaaattttagcggaaagaaaatttggcgga
tttggcggatttgactgaaatccgccaaattaaattcccgccaaaatttc
ttttttctgccaaattaaacattttgaaaatatgatttcttttaaggtgt
ttttgctattttttcgatgttttgacgccatcttaaggttaaatttttaa
gcgaccgccaaattaaattcccgccaaatttattttttcgtccatccgcc
aaattaaattccctctgaaaaaacttttttggccatccaccaaattaaat
tcccgccaaatttattttttcgtccatccgccaaattaaattccctctga
aaaaacttttttggccatccaccaaattaaattcccgccaaaatttcttc
ctttaaggtatcaaGGGGGTTCTTTTGATATGATAGCGACATCTCTACTC
AACTTACTGTTTCAGCTTTATAGCCACCGTATGCCGTACATGAAGGACTT
CAAAAACGATACCCAACGAATCAAATACATGCAAGACAATTATTTCTCAT
TCATATTCTCCCGTCATCCATTTGATCGACTCTACTCAGTTTACAGAAAC
AAATTTCAGAATCCAGTGGTCAAAAGATCAAGTTTCCTGCATTATTTTGG
TCCAATCATTCTTAAAGTAACAGGAAAAAATCCAAACACTCACTCGAAGA
AAATAATGCATGGAATCGAGTATTATGATatcacttttgaagaattttta
acgtttttaacaTTTGGTGGTTATGACGCAGATGATCACTGGGCGCCACA
GACTTCATTGTGCCAAATATGTAAATACGAATTGGATTTCATTGGTAG Coding sequence (CDS) from alignment at scaffold_119:87938..89935+ >TCONS_00046967 ID=TCONS_00046967|Name=TCONS_00046967|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_119:87938..89935+ (Clytia hemisphaerica)
AAAACTCACTCTATCAATACTTCCCTGGACACTCTTTATAGCCACCGTAT
GCCGTACATGAAGGACTTCAAAAACGATACCCAACGAATCAAATACATGC
AAGACAATTATTTCTCATTCATATTCTCCCGTCATCCATTTGATCGACTC
TACTCAGTTTACAGAAACAAATTTCAGAATCCAGTGGTCAAAAGATCAAG
TTTCCTGCATTATTTTGGTCCAATCATTCTTAAAGTAACAGGAAAAAATC
CAAACACTCACTCGAAGAAAATAATGCATGGAATCGAGTATTATGATatc
acttttgaagaatttttaacgtttttaacaTTTGGTGGTTATGACGCAGA
TGATCACTGGGCGCCACAGACTTCATTGTGCCAAATATGTAAATACGAAT
TGGATTTCATTGGTAAAACTCACTCTATCAATACTTCCCTGGACACTCTT
TATAGCCACCGTATGCCGTACATGAAGGACTTCAAAAACGATACCCAACG
AATCAAATACATGCAAGACAATTATTTCTCATTCATATTCTCCCGTCATC
CATTTGATCGACTCTACTCAGTTTACAGAAACAAATTTCAGAATCCAGTG
GTCAAAAGATCAAGTTTCCTGCATTATTTTGGTCCAATCATTCTTAAAGT
AACAGGAAAAAATCCAAACACTCACTCGAAGAAAATAATGCATGGAATCG
AGTATTATGATatcacttttgaagaatttttaacgtttttaacaTTTGGT
GGTTATGACGCAGATGATCACTGGGCGCCACAGACTTCATTGTGCCAAAT
ATGTAAATACGAATTGGATTTCATTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046967-exon-scaffold_119-1491911889:87938..87970 | TCONS_00046967-exon-scaffold_119-1491911889:87938..87970 | Clytia hemisphaerica | exon |
| TCONS_00046967-exon-scaffold_119-1510915933:87938..87970 | TCONS_00046967-exon-scaffold_119-1510915933:87938..87970 | Clytia hemisphaerica | exon |
| TCONS_00046967-exon-scaffold_119-1575043694:87938..87970 | TCONS_00046967-exon-scaffold_119-1575043694:87938..87970 | Clytia hemisphaerica | exon |
| TCONS_00046967-exon-scaffold_119-1491911889:89553..89935 | TCONS_00046967-exon-scaffold_119-1491911889:89553..89935 | Clytia hemisphaerica | exon |
| TCONS_00046967-exon-scaffold_119-1510915933:89553..89935 | TCONS_00046967-exon-scaffold_119-1510915933:89553..89935 | Clytia hemisphaerica | exon |
| TCONS_00046967-exon-scaffold_119-1575043694:89553..89935 | TCONS_00046967-exon-scaffold_119-1575043694:89553..89935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_119 | supercontig | scaffold_119:87938..89935 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005331 | Sulfotransferase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008146 | sulfotransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0008146 |
sulfotransferase activity |
Blast
The following BLAST results are available for this feature:
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