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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046959 ID=TCONS_00046959|Name=TCONS_00046959|organism=Clytia hemisphaerica|type=transcript|length=852bp
CAGTAAACTGCATTAAACTATGAACACTATTAGAAAGTTCGTAAAACCTA
TCTGTAAACTGTATCTTGATCTCCAATGGTTGTGTCTTTTTTATTTCACG
TAAAGCGTTCACTTTTTTCAATAAGGCAACAAAATACGGAAAATAAACAT
CAGCAAGGTGCGTTACGTAGATATTAATCCTTGTAATTTCCTTCATGCAT
GTTTCATTAAAAAGGTCATCTCTTGAAAGAAGGTATCGGTGCGTGTATTC
ATATCGGTCGAAATCTGGTTCTTTTATCACATCCATTAGATTTTTGAAGA
TAGTGTTCCTCGTCTCACGTAAATATGTCCGAAATGAAAAAATGAGCCGA
TGGGCAGGTAACCAGTTTGGAAAATCATTAGGATAGTCACAGCTAAAAAT
GATATTCCATAACCGATTATCTTGAAGCCTTTGCATTAAGGACAACGTTA
CTCCTATGTCCTCGCTTAGTAATGGTAGATTCTTATATAAATAGACCAAC
GTTTGTTTGACAGTTTTATTTCCCATGACTCTTTCGTTATAAAGACGttt
caagaaattttccaaatctttatgaGGAATCTCCGTCGTATATCCATTga
aattcctttcaaaatgaTTGACATTGAAGTTTGGTCGCCATTGAACAACA
AAACCATCTCTTGTAAGGTATACATTAATATTGAAGCACTCTTCATTTCG
TGTTAAGGGCTCTAAACGGAGCAAAAGCTCGTCTACGAAAGGCTGATATA
TCCCGTCTACAATAATGGTAACATTTTGTTTATGTGGGCAAGCCAACATT
CCAAATTCTTGAAACTGGAACCCATCAATTTTAGCAGTGAAGAGAAAAGA
AA Run BLAST on NCBI protein sequence of TCONS_00046959-protein >TCONS_00046959-protein ID=TCONS_00046959-protein|Name=TCONS_00046959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
SFLFTAKIDGFQFQEFGMLACPHKQNVTIIVDGIYQPFVDELLLRLEPLT
RNEECFNINVYLTRDGFVVQWRPNFNVNHFERNFNGYTTEIPHKDLENFL
KRLYNERVMGNKTVKQTLVYLYKNLPLLSEDIGVTLSLMQRLQDNRLWNI
IFSCDYPNDFPNWLPAHRLIFSFRTYLRETRNTIFKNLMDVIKEPDFDRY
EYTHRYLLSRDDLFNETCMKEITRINIYVTHLADVYFPYFVALLKKVNAL
REIKKTQPLEIKIQFTDRFYELSNSVHSLMQFT Run BLAST on NCBI transcript from alignment at scaffold_118:423891..424742 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046959 ID=TCONS_00046959|Name=TCONS_00046959|organism=Clytia hemisphaerica|type=transcript|length=852bp|location=Sequence derived from alignment at scaffold_118:423891..424742 (Clytia hemisphaerica)
TTTCTTTTCTCTTCACTGCTAAAATTGATGGGTTCCAGTTTCAAGAATTT
GGAATGTTGGCTTGCCCACATAAACAAAATGTTACCATTATTGTAGACGG
GATATATCAGCCTTTCGTAGACGAGCTTTTGCTCCGTTTAGAGCCCTTAA
CACGAAATGAAGAGTGCTTCAATATTAATGTATACCTTACAAGAGATGGT
TTTGTTGTTCAATGGCGACCAAACTTCAATGTCAAtcattttgaaaggaa
tttcAATGGATATACGACGGAGATTCCtcataaagatttggaaaatttct
tgaaaCGTCTTTATAACGAAAGAGTCATGGGAAATAAAACTGTCAAACAA
ACGTTGGTCTATTTATATAAGAATCTACCATTACTAAGCGAGGACATAGG
AGTAACGTTGTCCTTAATGCAAAGGCTTCAAGATAATCGGTTATGGAATA
TCATTTTTAGCTGTGACTATCCTAATGATTTTCCAAACTGGTTACCTGCC
CATCGGCTCATTTTTTCATTTCGGACATATTTACGTGAGACGAGGAACAC
TATCTTCAAAAATCTAATGGATGTGATAAAAGAACCAGATTTCGACCGAT
ATGAATACACGCACCGATACCTTCTTTCAAGAGATGACCTTTTTAATGAA
ACATGCATGAAGGAAATTACAAGGATTAATATCTACGTAACGCACCTTGC
TGATGTTTATTTTCCGTATTTTGTTGCCTTATTGAAAAAAGTGAACGCTT
TACGTGAAATAAAAAAGACACAACCATTGGAGATCAAGATACAGTTTACA
GATAGGTTTTACGAACTTTCTAATAGTGTTCATAGTTTAATGCAGTTTAC
TG Coding sequence (CDS) from alignment at scaffold_118:423891..424742 >TCONS_00046959 ID=TCONS_00046959|Name=TCONS_00046959|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at scaffold_118:423891..424742 (Clytia hemisphaerica)
TCTTTTCTCTTCACTGCTAAAATTGATGGGTTCCAGTTTCAAGAATTTGG
AATGTTGGCTTGCCCACATAAACAAAATGTTACCATTATTGTAGACGGGA
TATATCAGCCTTTCGTAGACGAGCTTTTGCTCCGTTTAGAGCCCTTAACA
CGAAATGAAGAGTGCTTCAATATTAATGTATACCTTACAAGAGATGGTTT
TGTTGTTCAATGGCGACCAAACTTCAATGTCAAtcattttgaaaggaatt
tcAATGGATATACGACGGAGATTCCtcataaagatttggaaaatttcttg
aaaCGTCTTTATAACGAAAGAGTCATGGGAAATAAAACTGTCAAACAAAC
GTTGGTCTATTTATATAAGAATCTACCATTACTAAGCGAGGACATAGGAG
TAACGTTGTCCTTAATGCAAAGGCTTCAAGATAATCGGTTATGGAATATC
ATTTTTAGCTGTGACTATCCTAATGATTTTCCAAACTGGTTACCTGCCCA
TCGGCTCATTTTTTCATTTCGGACATATTTACGTGAGACGAGGAACACTA
TCTTCAAAAATCTAATGGATGTGATAAAAGAACCAGATTTCGACCGATAT
GAATACACGCACCGATACCTTCTTTCAAGAGATGACCTTTTTAATGAAAC
ATGCATGAAGGAAATTACAAGGATTAATATCTACGTAACGCACCTTGCTG
ATGTTTATTTTCCGTATTTTGTTGCCTTATTGAAAAAAGTGAACGCTTTA
CGTGAAATAAAAAAGACACAACCATTGGAGATCAAGATACAGTTTACAGA
TAGGTTTTACGAACTTTCTAATAGTGTTCATAGTTTAATGCAGTTTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046959-exon-scaffold_118-1491911889:423891..424742 | TCONS_00046959-exon-scaffold_118-1491911889:423891..424742 | Clytia hemisphaerica | exon |
| TCONS_00046959-exon-scaffold_118-1510915933:423891..424742 | TCONS_00046959-exon-scaffold_118-1510915933:423891..424742 | Clytia hemisphaerica | exon |
| TCONS_00046959-exon-scaffold_118-1575043694:423891..424742 | TCONS_00046959-exon-scaffold_118-1575043694:423891..424742 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_118 | supercontig | scaffold_118:423891..424742 . |
Blast
The following BLAST results are available for this feature:
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