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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046956 ID=TCONS_00046956|Name=TCONS_00046956|organism=Clytia hemisphaerica|type=transcript|length=939bp
ATAATCTTAgggaacatttttttaaattatcctAAAGAGTAGAAGAACTT
ACTATGAAAGGAATATACTTATATTGCTTCCTCGTTTTGTCTCTCAAATG
TGGTCCTGTCAAAGGGAATCGATGTTGTTCGCAAAGTGTAAGCTCGATGA
AATCGGAATTCAAGTATGACGTAGAAAGCGCTATTCGTACCCACAATGAG
TTGTATCACACTGAAAAATACACCATTCGAGGTGCAGGAAacctaaaatt
tcaaatcaccGAGGATTACCGAGAATATCCCATTTCTTCGAGTTACGAAG
ATGATGCAATCGATAGTCGGTTTTTCACTGATAATTCATTTCGAGATCCA
TCAGCACCTATCGTTGTCGGCTCTGAAATCCGGGAATCCCGATTCATAAG
AAAGAACGCGAGGCATTCCGATTTTGATCCGAAACGGTATTTAGATGCCG
AGTTTCACTGCATTGGAGGAAACAAAGAAACAGCGTGCAAGGTAGATATC
TATCTCATGGCTTTCAAAATTCCGTACAATGCACAGCTTTCACACAAAGG
CCTTGGTTGCATATGCGAATCTAAAGGAAACTACACCATTGAAAACATTC
CAGAAGTGGTTTTCAGTTATTCCAGCAAAGATGATGAGggaaattagaaa
ataaagGCTCGAGGACACGAGAAGTTtatttcgcgttggtgcaatgcaac
atgctccatcccactaAACACtagaaaaaaagtgcgtgtcccgtggtttc
ttttattatttaatgggataaaaagtgagggaaatatcCAAAAGACACGC
TAATTATGTctctgggacaatggagcaaaactgattcgaatcaattttgc
tccattgtcccagggacaacaGTGAGAGacaaaaatgttattaaaaagtc
tgtccagatataattggcagtggaaacaagaatgcctgt Run BLAST on NCBI protein sequence of TCONS_00046956-protein >TCONS_00046956-protein ID=TCONS_00046956-protein|Name=TCONS_00046956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MKGIYLYCFLVLSLKCGPVKGNRCCSQSVSSMKSEFKYDVESAIRTHNEL
YHTEKYTIRGAGNLKFQITEDYREYPISSSYEDDAIDSRFFTDNSFRDPS
APIVVGSEIRESRFIRKNARHSDFDPKRYLDAEFHCIGGNKETACKVDIY
LMAFKIPYNAQLSHKGLGCICESKGNYTIENIPEVVFSYSSKDDEGN Run BLAST on NCBI transcript from alignment at scaffold_118:325264..326202 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046956 ID=TCONS_00046956|Name=TCONS_00046956|organism=Clytia hemisphaerica|type=transcript|length=939bp|location=Sequence derived from alignment at scaffold_118:325264..326202 (Clytia hemisphaerica)
acaggcattcttgtttccactgccaattatatctggacagactttttaat
aacatttttgtCTCTCACtgttgtccctgggacaatggagcaaaattgat
tcgaatcagttttgctccattgtcccagagACATAATTAGCGTGTCTTTT
Ggatatttccctcactttttatcccattaaataataaaagaaaccacggg
acacgcactttttttctaGTGTTtagtgggatggagcatgttgcattgca
ccaacgcgaaataAACTTCTCGTGTCCTCGAGCctttattttctaatttc
cCTCATCATCTTTGCTGGAATAACTGAAAACCACTTCTGGAATGTTTTCA
ATGGTGTAGTTTCCTTTAGATTCGCATATGCAACCAAGGCCTTTGTGTGA
AAGCTGTGCATTGTACGGAATTTTGAAAGCCATGAGATAGATATCTACCT
TGCACGCTGTTTCTTTGTTTCCTCCAATGCAGTGAAACTCGGCATCTAAA
TACCGTTTCGGATCAAAATCGGAATGCCTCGCGTTCTTTCTTATGAATCG
GGATTCCCGGATTTCAGAGCCGACAACGATAGGTGCTGATGGATCTCGAA
ATGAATTATCAGTGAAAAACCGACTATCGATTGCATCATCTTCGTAACTC
GAAGAAATGGGATATTCTCGGTAATCCTCggtgatttgaaattttaggtT
TCCTGCACCTCGAATGGTGTATTTTTCAGTGTGATACAACTCATTGTGGG
TACGAATAGCGCTTTCTACGTCATACTTGAATTCCGATTTCATCGAGCTT
ACACTTTGCGAACAACATCGATTCCCTTTGACAGGACCACATTTGAGAGA
CAAAACGAGGAAGCAATATAAGTATATTCCTTTCATAGTAAGTTCTTCTA
CTCTTTaggataatttaaaaaaatgttcccTAAGATTAT Coding sequence (CDS) from alignment at scaffold_118:325264..326202 >TCONS_00046956 ID=TCONS_00046956|Name=TCONS_00046956|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_118:325264..326202 (Clytia hemisphaerica)
ctaatttccCTCATCATCTTTGCTGGAATAACTGAAAACCACTTCTGGAA
TGTTTTCAATGGTGTAGTTTCCTTTAGATTCGCATATGCAACCAAGGCCT
TTGTGTGAAAGCTGTGCATTGTACGGAATTTTGAAAGCCATGAGATAGAT
ATCTACCTTGCACGCTGTTTCTTTGTTTCCTCCAATGCAGTGAAACTCGG
CATCTAAATACCGTTTCGGATCAAAATCGGAATGCCTCGCGTTCTTTCTT
ATGAATCGGGATTCCCGGATTTCAGAGCCGACAACGATAGGTGCTGATGG
ATCTCGAAATGAATTATCAGTGAAAAACCGACTATCGATTGCATCATCTT
CGTAACTCGAAGAAATGGGATATTCTCGGTAATCCTCggtgatttgaaat
tttaggtTTCCTGCACCTCGAATGGTGTATTTTTCAGTGTGATACAACTC
ATTGTGGGTACGAATAGCGCTTTCTACGTCATACTTGAATTCCGATTTCA
TCGAGCTTACACTTTGCGAACAACATCGATTCCCTTTGACAGGACCACAT
TTGAGAGACAAAACGAGGAAGCAATATAAGTATATTCCTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046956-exon-scaffold_118-1491911889:325264..326202 | TCONS_00046956-exon-scaffold_118-1491911889:325264..326202 | Clytia hemisphaerica | exon |
| TCONS_00046956-exon-scaffold_118-1510915933:325264..326202 | TCONS_00046956-exon-scaffold_118-1510915933:325264..326202 | Clytia hemisphaerica | exon |
| TCONS_00046956-exon-scaffold_118-1575043694:325264..326202 | TCONS_00046956-exon-scaffold_118-1575043694:325264..326202 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_118 | supercontig | scaffold_118:325264..326202 . |
Blast
The following BLAST results are available for this feature:
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